Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36699 * 119.99561 * 2 1 4 4 H 1.08005 * 119.99464 * 209.04245 * 3 2 1 5 5 C 1.39126 * 120.00391 * 29.04997 * 3 2 1 6 6 N 1.31313 * 119.99910 * 8.27793 * 5 3 2 7 7 Si 1.86798 * 120.00212 * 188.28750 * 5 3 2 8 8 H 1.48500 * 109.47296 * 89.99344 * 7 5 3 9 9 H 1.48495 * 109.47213 * 209.99808 * 7 5 3 10 10 H 1.48509 * 109.46862 * 329.99555 * 7 5 3 11 11 C 1.34776 * 120.00177 * 180.02562 * 2 1 3 12 12 O 1.21763 * 120.00118 * 179.97438 * 11 2 1 13 13 C 1.46181 * 119.99819 * 359.97438 * 11 2 1 14 14 C 1.35059 * 119.99700 * 172.85886 * 13 11 2 15 15 C 1.47043 * 120.00411 * 347.25367 * 14 13 11 16 16 C 1.40908 * 119.78449 * 133.37451 * 15 14 13 17 17 C 1.35625 * 120.82006 * 180.02562 * 16 15 14 18 18 C 1.40781 * 120.07154 * 359.97438 * 17 16 15 19 19 C 1.40436 * 121.01349 * 180.02562 * 18 17 16 20 20 C 1.36173 * 119.73756 * 179.97438 * 19 18 17 21 21 C 1.39361 * 121.01476 * 0.02562 * 20 19 18 22 22 C 1.36092 * 120.94356 * 359.97438 * 21 20 19 23 23 C 1.40689 * 119.66051 * 0.02562 * 22 21 20 24 24 C 1.38844 * 119.78120 * 313.10710 * 15 14 13 25 25 H 1.09003 * 109.46992 * 268.60773 * 1 2 3 26 26 H 1.08996 * 109.46936 * 28.60911 * 1 2 3 27 27 H 1.08999 * 109.47078 * 148.60829 * 1 2 3 28 28 H 0.97007 * 120.00258 * 180.02562 * 6 5 3 29 29 H 1.08000 * 120.00077 * 352.86951 * 13 11 2 30 30 H 1.07999 * 119.99664 * 167.52373 * 14 13 11 31 31 H 1.07998 * 119.59439 * 359.97438 * 16 15 14 32 32 H 1.08003 * 119.96626 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.13134 * 359.96212 * 19 18 17 34 34 H 1.08002 * 119.49148 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.52445 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.16949 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.28995 * 359.96920 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1484 1.1839 0.0000 4 1 3.1266 1.2427 -0.4541 5 6 1.5841 2.3130 0.5850 6 7 0.4733 2.2080 1.2775 7 14 2.4062 3.9784 0.3853 8 1 1.8778 4.6487 -0.8299 9 1 2.1212 4.8173 1.5769 10 1 3.8735 3.7930 0.2499 11 6 2.1390 -1.1672 -0.0005 12 8 3.3566 -1.1672 -0.0010 13 6 1.4081 -2.4331 -0.0005 14 6 2.0755 -3.5982 -0.1464 15 6 3.4799 -3.5915 -0.5821 16 6 4.4273 -4.3827 0.0974 17 6 5.7281 -4.3920 -0.2863 18 6 6.1479 -3.6057 -1.3759 19 6 7.4897 -3.6008 -1.7904 20 6 7.8671 -2.8307 -2.8481 21 6 6.9411 -2.0432 -3.5296 22 6 5.6322 -2.0218 -3.1574 23 6 5.2050 -2.8044 -2.0691 24 6 3.8626 -2.8098 -1.6639 25 1 -0.3633 -0.0250 1.0274 26 1 -0.3633 0.9022 -0.4921 27 1 -0.3633 -0.8772 -0.5353 28 1 0.0796 2.9953 1.6851 29 1 0.3344 -2.4368 0.1160 30 1 1.5764 -4.5350 0.0527 31 1 4.1140 -4.9886 0.9347 32 1 6.4428 -5.0034 0.2447 33 1 8.2194 -4.2052 -1.2721 34 1 8.9000 -2.8302 -3.1637 35 1 7.2669 -1.4413 -4.3651 36 1 4.9251 -1.4071 -3.6947 37 1 3.1336 -2.2079 -2.1861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493671696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = 43.305956 kcal Electronic energy + Delta-G solvation = -21081.115284 eV Core-core repulsion = 17982.227697 eV Total energy + Delta-G solvation = -3098.887586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90378 -38.49069 -36.32243 -34.64728 -32.81976 -31.99777 -31.56060 -29.49324 -28.25929 -26.39943 -24.88498 -23.48652 -22.59414 -21.55685 -21.00783 -18.16871 -17.13453 -16.84233 -16.68364 -16.02891 -15.32897 -14.73384 -14.42519 -14.03841 -13.81167 -13.67140 -13.31760 -13.08602 -12.90010 -12.71556 -12.51243 -11.88007 -11.74250 -11.47542 -11.34991 -11.22733 -10.98605 -10.82810 -10.58123 -10.45262 -10.37604 -10.35325 -9.60671 -9.08563 -8.87892 -8.36308 -7.95216 -7.63273 -7.02148 -6.39267 -3.92824 0.88766 1.30475 2.06652 2.60727 3.15582 3.21736 3.28094 3.48233 4.09699 4.42596 4.57860 4.95217 4.96700 5.14892 5.15848 5.21169 5.25818 5.43321 5.61052 5.64854 5.70763 5.79994 5.86262 6.00350 6.14896 6.31535 6.36312 6.39777 6.59785 6.65680 6.72791 6.77866 6.82720 6.84590 7.02078 7.15328 7.20885 7.25166 7.46988 7.48674 8.15156 8.47975 9.17837 9.37818 10.03246 10.64270 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.005308 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.064223 B = 5274.069155 C = 6358.003901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.432 5.432 3 C -0.297 4.297 4 H 0.098 0.902 5 C 0.031 3.969 6 N -0.875 5.875 7 Si 0.926 3.074 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.457 3.543 12 O -0.575 6.575 13 C -0.167 4.167 14 C -0.090 4.090 15 C -0.042 4.042 16 C -0.091 4.091 17 C -0.130 4.130 18 C -0.048 4.048 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.050 4.050 24 C -0.024 4.024 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.269 0.731 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -10.632 -5.958 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.148 5.148 3 C -0.426 4.426 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.514 5.514 7 Si 0.753 3.247 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.248 3.752 12 O -0.461 6.461 13 C -0.188 4.188 14 C -0.111 4.111 15 C -0.042 4.042 16 C -0.109 4.109 17 C -0.148 4.148 18 C -0.048 4.048 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.151 4.151 22 C -0.111 4.111 23 C -0.050 4.050 24 C -0.043 4.043 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.034 -10.413 -5.842 12.958 hybrid contribution -0.011 1.112 0.293 1.150 sum 5.023 -9.301 -5.549 11.938 Atomic orbital electron populations 1.21541 0.81527 0.99284 1.01251 1.43576 1.05450 1.05048 1.60765 1.19646 1.03265 0.85194 1.34479 0.88448 1.25479 0.96513 1.00441 0.94861 1.69912 1.19457 1.30575 1.31413 0.85912 0.79939 0.81085 0.77769 1.20251 1.20797 1.19204 1.18156 0.87914 0.83788 0.85365 1.90742 1.12970 1.86615 1.55795 1.23409 0.99514 0.93968 1.01910 1.22029 0.93050 0.97069 0.98990 1.18673 0.93273 0.96994 0.95264 1.20801 0.93077 0.98345 0.98707 1.20668 0.96052 1.00671 0.97452 1.18039 0.93232 0.97417 0.96107 1.20930 0.94794 0.99892 0.97432 1.20726 0.99132 0.97707 0.96692 1.20704 0.93517 1.00265 1.00656 1.21085 0.96281 0.97762 0.95927 1.17974 0.93588 0.97348 0.96054 1.21239 0.94139 0.93511 0.95400 0.92498 0.91361 0.95185 0.92043 0.86123 0.85972 0.86583 0.86397 0.86287 0.86710 0.86580 0.85965 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.32 59.85 0.50 2.87 16 2 N -0.43 -11.04 2.99 -123.88 -0.37 -11.41 16 3 C -0.30 -8.25 9.14 -15.05 -0.14 -8.38 16 4 H 0.10 2.83 7.52 -52.48 -0.39 2.44 16 5 C 0.03 0.83 5.14 -17.44 -0.09 0.74 16 6 N -0.88 -23.25 10.87 55.50 0.60 -22.65 16 7 Si 0.93 20.76 29.56 -169.99 -5.03 15.73 16 8 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.46 11.15 6.69 -13.07 -0.09 11.07 16 12 O -0.58 -15.62 12.36 5.13 0.06 -15.56 16 13 C -0.17 -3.19 9.00 -37.53 -0.34 -3.53 16 14 C -0.09 -1.53 9.76 -37.14 -0.36 -1.89 16 15 C -0.04 -0.77 4.35 -105.09 -0.46 -1.23 16 16 C -0.09 -1.51 9.68 -39.51 -0.38 -1.89 16 17 C -0.13 -2.07 9.73 -39.56 -0.38 -2.45 16 18 C -0.05 -0.82 5.75 -106.73 -0.61 -1.43 16 19 C -0.11 -1.63 9.75 -39.50 -0.39 -2.01 16 20 C -0.12 -1.69 9.95 -39.91 -0.40 -2.09 16 21 C -0.13 -1.92 9.95 -39.93 -0.40 -2.31 16 22 C -0.09 -1.53 9.77 -39.43 -0.39 -1.92 16 23 C -0.05 -0.92 5.74 -106.85 -0.61 -1.53 16 24 C -0.02 -0.48 6.56 -38.61 -0.25 -0.73 16 25 H 0.06 1.30 7.61 -51.93 -0.40 0.91 16 26 H 0.07 1.57 7.19 -51.93 -0.37 1.20 16 27 H 0.03 0.54 6.28 -51.93 -0.33 0.22 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.12 1.99 6.37 -52.49 -0.33 1.65 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 34 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.12 2.35 7.39 -52.49 -0.39 1.96 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -31.56 313.45 -9.10 -40.66 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.31 Total: 5.22 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -4.79 Total: -16.72 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.23 Total: -34.06 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.06 Total: -15.56 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.56 -9.10 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493671696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.967 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds