Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38238 * 119.99396 * 2 1 4 4 C 1.38329 * 119.98737 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 120.01479 * 179.97438 * 4 3 2 6 6 C 1.38367 * 119.97481 * 359.97438 * 4 3 2 7 7 C 1.38204 * 119.98555 * 359.72452 * 6 4 3 8 8 C 1.38221 * 119.99519 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98756 * 0.02979 * 8 2 1 10 10 N 1.46902 * 109.47260 * 78.03030 * 9 8 2 11 11 C 1.46893 * 110.99858 * 73.51343 * 10 9 8 12 12 C 1.50706 * 109.46889 * 197.59748 * 11 10 9 13 13 H 1.07992 * 120.00225 * 355.36783 * 12 11 10 14 14 C 1.37882 * 119.99582 * 175.36286 * 12 11 10 15 15 N 1.31516 * 120.00123 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99806 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46904 * 60.00056 * 16 14 12 18 18 H 1.48495 * 109.47104 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47247 * 300.00061 * 16 14 12 20 20 C 1.46902 * 110.99926 * 197.46861 * 10 9 8 21 21 C 1.53001 * 109.47075 * 307.96973 * 20 10 9 22 22 C 1.53006 * 109.47177 * 67.96915 * 20 10 9 23 23 H 1.08999 * 109.47559 * 273.92372 * 1 2 3 24 24 H 1.09004 * 109.47454 * 33.92365 * 1 2 3 25 25 H 1.09007 * 109.47292 * 153.91771 * 1 2 3 26 26 H 1.08003 * 120.00514 * 359.94935 * 3 2 1 27 27 H 1.08002 * 120.01426 * 180.02562 * 6 4 3 28 28 H 1.07999 * 119.99355 * 180.27417 * 7 6 4 29 29 H 1.09005 * 109.46354 * 318.03578 * 9 8 2 30 30 H 1.08994 * 109.47328 * 198.03285 * 9 8 2 31 31 H 1.08995 * 109.47228 * 317.59624 * 11 10 9 32 32 H 1.09002 * 109.47315 * 77.59831 * 11 10 9 33 33 H 0.96999 * 119.99511 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47239 * 187.96559 * 20 10 9 35 35 H 1.08995 * 109.47447 * 65.08039 * 21 20 10 36 36 H 1.08999 * 109.46959 * 185.08354 * 21 20 10 37 37 H 1.09005 * 109.46905 * 305.08139 * 21 20 10 38 38 H 1.08993 * 109.46907 * 63.81606 * 22 20 10 39 39 H 1.08994 * 109.47063 * 183.81946 * 22 20 10 40 40 H 1.09006 * 109.46570 * 303.81953 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 0.0005 5 17 4.4499 2.7002 -0.0001 6 6 4.2725 -0.0016 0.0016 7 6 3.5805 -1.1979 0.0079 8 6 2.1979 -1.1971 0.0005 9 6 1.4440 -2.5020 0.0004 10 7 0.9509 -2.7826 -1.3546 11 6 2.0486 -3.1956 -2.2392 12 6 1.6149 -3.0576 -3.6759 13 1 0.6000 -2.7709 -3.9084 14 6 2.5140 -3.2972 -4.6934 15 7 3.7498 -3.6467 -4.4101 16 14 1.9767 -3.1255 -6.4742 17 1 1.5180 -1.7348 -6.7209 18 1 3.1212 -3.4347 -7.3685 19 1 0.8641 -4.0698 -6.7488 20 6 -0.1134 -3.7948 -1.3284 21 6 0.3677 -5.0207 -0.5495 22 6 -1.3541 -3.2128 -0.6480 23 1 -0.3634 0.0703 1.0252 24 1 -0.3634 0.8527 -0.5735 25 1 -0.3634 -0.9231 -0.4518 26 1 1.6580 2.1326 -0.0008 27 1 5.3525 -0.0025 0.0024 28 1 4.1198 -2.1336 0.0132 29 1 0.6003 -2.4341 0.6873 30 1 2.1082 -3.3054 0.3190 31 1 2.9176 -2.5627 -2.0596 32 1 2.3076 -4.2347 -2.0360 33 1 4.3824 -3.8149 -5.1260 34 1 -0.3621 -4.0870 -2.3487 35 1 0.5302 -4.7479 0.4931 36 1 -0.3860 -5.8060 -0.6065 37 1 1.3016 -5.3814 -0.9805 38 1 -1.7365 -2.3812 -1.2397 39 1 -2.1199 -3.9841 -0.5677 40 1 -1.0894 -2.8583 0.3483 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546653757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = 8.958378 kcal Electronic energy + Delta-G solvation = -20439.537684 eV Core-core repulsion = 17472.560920 eV Total energy + Delta-G solvation = -2966.976764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53878 -37.52945 -36.21164 -32.84741 -32.51014 -31.90538 -29.98240 -27.35404 -26.91234 -26.30083 -24.50632 -22.15523 -21.83834 -20.61632 -18.71540 -16.45926 -16.25584 -15.61034 -15.41015 -14.73880 -14.52726 -14.04532 -13.64759 -13.42597 -13.01409 -12.89180 -12.71659 -12.51696 -12.45812 -12.14006 -11.78661 -11.58009 -11.44125 -11.08907 -11.01968 -10.90535 -10.73278 -10.69761 -10.63993 -10.50807 -10.38253 -10.08417 -9.70731 -9.19827 -8.50723 -8.37779 -8.12408 -7.22978 -5.99560 -3.99510 1.50122 1.64441 2.36728 3.34648 3.39062 3.41899 3.91199 4.45433 4.92151 5.05053 5.16828 5.31258 5.37574 5.45376 5.52823 5.57900 5.69314 5.79261 5.86559 5.90920 5.93877 5.98346 6.05562 6.14936 6.18513 6.20629 6.28005 6.43489 6.51630 6.55219 6.69861 6.70909 6.81211 7.00873 7.17827 7.30922 7.39609 7.83162 8.13520 8.23339 8.55836 9.06743 9.63768 11.11044 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.006298 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.884229 B = 4445.133993 C = 5761.800829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.050 4.050 3 C -0.118 4.118 4 C -0.036 4.036 5 Cl -0.088 7.088 6 C -0.117 4.117 7 C -0.090 4.090 8 C -0.054 4.054 9 C 0.086 3.914 10 N -0.521 5.521 11 C 0.189 3.811 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.079 3.921 21 C -0.182 4.182 22 C -0.144 4.144 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.037 0.963 32 H -0.007 1.007 33 H 0.260 0.740 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 5.384 11.589 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.051 4.051 3 C -0.137 4.137 4 C -0.062 4.062 5 Cl -0.060 7.060 6 C -0.136 4.136 7 C -0.109 4.109 8 C -0.055 4.055 9 C -0.041 4.041 10 N -0.245 5.245 11 C 0.064 3.936 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.029 4.029 21 C -0.241 4.241 22 C -0.201 4.201 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.011 0.989 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.234 5.896 11.299 13.430 hybrid contribution 0.496 -0.499 -0.853 1.105 sum -3.737 5.398 10.447 12.339 Atomic orbital electron populations 1.20975 0.90807 1.04821 1.01303 1.19604 0.96349 0.91446 0.97705 1.20814 0.91755 0.98450 1.02701 1.20780 0.92311 0.86386 1.06745 1.98332 1.77095 1.33371 1.97175 1.20906 1.00063 0.90757 1.01866 1.21034 0.93814 0.97537 0.98492 1.19834 0.93199 0.95102 0.97334 1.21038 0.97327 0.92309 0.93455 1.62362 1.12985 1.42843 1.06280 1.19824 0.88602 0.94164 0.91030 1.21089 0.97323 1.45411 0.90191 0.92133 1.24945 0.94895 0.95578 0.99069 1.69936 1.03806 1.47595 1.32517 0.86626 0.77897 0.78602 0.84667 1.20257 1.21447 1.20361 1.21620 0.91655 0.89601 1.00071 1.22461 1.02089 0.99510 1.00025 1.21941 0.97325 1.00710 1.00140 0.92083 0.91959 0.88544 0.85633 0.85520 0.85400 0.90747 0.94695 0.94509 0.98940 0.93000 0.89086 0.93494 0.93212 0.91981 0.92178 0.93217 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.38 36.00 0.34 -1.33 16 2 C -0.05 -0.80 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.81 9.50 -39.55 -0.38 -2.19 16 4 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 5 Cl -0.09 -1.23 28.96 -51.86 -1.50 -2.73 16 6 C -0.12 -1.87 9.83 -39.55 -0.39 -2.26 16 7 C -0.09 -1.53 8.59 -39.59 -0.34 -1.87 16 8 C -0.05 -0.92 4.84 -104.62 -0.51 -1.43 16 9 C 0.09 1.46 2.86 -4.97 -0.01 1.44 16 10 N -0.52 -10.26 3.61 -229.51 -0.83 -11.09 16 11 C 0.19 4.66 4.47 -4.98 -0.02 4.63 16 12 C -0.50 -13.75 8.54 -34.44 -0.29 -14.04 16 13 H 0.06 1.65 7.56 -52.49 -0.40 1.26 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.08 1.39 2.81 -67.71 -0.19 1.20 16 21 C -0.18 -2.91 8.40 37.16 0.31 -2.60 16 22 C -0.14 -2.00 8.01 37.16 0.30 -1.70 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 25 H 0.10 1.43 3.94 -51.93 -0.20 1.22 16 26 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 27 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.13 2.11 8.02 -52.49 -0.42 1.69 16 29 H 0.07 1.10 5.15 -51.93 -0.27 0.83 16 30 H 0.03 0.60 7.16 -51.93 -0.37 0.23 16 31 H 0.04 0.99 6.36 -51.93 -0.33 0.66 16 32 H -0.01 -0.19 6.26 -51.93 -0.33 -0.51 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.09 1.82 7.13 -51.93 -0.37 1.44 16 35 H 0.05 0.67 7.00 -51.93 -0.36 0.31 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.14 6.42 -51.93 -0.33 0.81 16 38 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.63 5.96 -51.93 -0.31 0.32 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -28.83 327.20 -9.59 -38.42 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.76 Total: 0.34 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.15 Total: -20.89 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.09 Total: -36.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.83 -9.59 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546653757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.383 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds