Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38238 * 119.99396 * 2 1 4 4 C 1.38329 * 119.98737 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 120.01479 * 179.97438 * 4 3 2 6 6 C 1.38367 * 119.97481 * 359.97438 * 4 3 2 7 7 C 1.38204 * 119.98555 * 359.72452 * 6 4 3 8 8 C 1.38221 * 119.99519 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98756 * 0.02979 * 8 2 1 10 10 N 1.46902 * 109.47260 * 78.03030 * 9 8 2 11 11 C 1.46893 * 110.99858 * 73.51343 * 10 9 8 12 12 C 1.50706 * 109.46889 * 197.59748 * 11 10 9 13 13 H 1.07992 * 120.00225 * 355.36783 * 12 11 10 14 14 C 1.37882 * 119.99582 * 175.36286 * 12 11 10 15 15 N 1.31516 * 120.00123 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99806 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46904 * 60.00056 * 16 14 12 18 18 H 1.48495 * 109.47104 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47247 * 300.00061 * 16 14 12 20 20 C 1.46902 * 110.99926 * 197.46861 * 10 9 8 21 21 C 1.53001 * 109.47075 * 307.96973 * 20 10 9 22 22 C 1.53006 * 109.47177 * 67.96915 * 20 10 9 23 23 H 1.08999 * 109.47559 * 273.92372 * 1 2 3 24 24 H 1.09004 * 109.47454 * 33.92365 * 1 2 3 25 25 H 1.09007 * 109.47292 * 153.91771 * 1 2 3 26 26 H 1.08003 * 120.00514 * 359.94935 * 3 2 1 27 27 H 1.08002 * 120.01426 * 180.02562 * 6 4 3 28 28 H 1.07999 * 119.99355 * 180.27417 * 7 6 4 29 29 H 1.09005 * 109.46354 * 318.03578 * 9 8 2 30 30 H 1.08994 * 109.47328 * 198.03285 * 9 8 2 31 31 H 1.08995 * 109.47228 * 317.59624 * 11 10 9 32 32 H 1.09002 * 109.47315 * 77.59831 * 11 10 9 33 33 H 0.96999 * 119.99511 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47239 * 187.96559 * 20 10 9 35 35 H 1.08995 * 109.47447 * 65.08039 * 21 20 10 36 36 H 1.08999 * 109.46959 * 185.08354 * 21 20 10 37 37 H 1.09005 * 109.46905 * 305.08139 * 21 20 10 38 38 H 1.08993 * 109.46907 * 63.81606 * 22 20 10 39 39 H 1.08994 * 109.47063 * 183.81946 * 22 20 10 40 40 H 1.09006 * 109.46570 * 303.81953 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 0.0005 5 17 4.4499 2.7002 -0.0001 6 6 4.2725 -0.0016 0.0016 7 6 3.5805 -1.1979 0.0079 8 6 2.1979 -1.1971 0.0005 9 6 1.4440 -2.5020 0.0004 10 7 0.9509 -2.7826 -1.3546 11 6 2.0486 -3.1956 -2.2392 12 6 1.6149 -3.0576 -3.6759 13 1 0.6000 -2.7709 -3.9084 14 6 2.5140 -3.2972 -4.6934 15 7 3.7498 -3.6467 -4.4101 16 14 1.9767 -3.1255 -6.4742 17 1 1.5180 -1.7348 -6.7209 18 1 3.1212 -3.4347 -7.3685 19 1 0.8641 -4.0698 -6.7488 20 6 -0.1134 -3.7948 -1.3284 21 6 0.3677 -5.0207 -0.5495 22 6 -1.3541 -3.2128 -0.6480 23 1 -0.3634 0.0703 1.0252 24 1 -0.3634 0.8527 -0.5735 25 1 -0.3634 -0.9231 -0.4518 26 1 1.6580 2.1326 -0.0008 27 1 5.3525 -0.0025 0.0024 28 1 4.1198 -2.1336 0.0132 29 1 0.6003 -2.4341 0.6873 30 1 2.1082 -3.3054 0.3190 31 1 2.9176 -2.5627 -2.0596 32 1 2.3076 -4.2347 -2.0360 33 1 4.3824 -3.8149 -5.1260 34 1 -0.3621 -4.0870 -2.3487 35 1 0.5302 -4.7479 0.4931 36 1 -0.3860 -5.8060 -0.6065 37 1 1.3016 -5.3814 -0.9805 38 1 -1.7365 -2.3812 -1.2397 39 1 -2.1199 -3.9841 -0.5677 40 1 -1.0894 -2.8583 0.3483 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546653757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = -5.642981 kcal Electronic energy + Delta-G solvation = -20440.170846 eV Core-core repulsion = 17472.560920 eV Total energy + Delta-G solvation = -2967.609927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82704 -38.95165 -37.40005 -34.87961 -33.74115 -33.22850 -31.52914 -28.99073 -28.15264 -27.59501 -26.08688 -23.93695 -23.13982 -21.87109 -20.18037 -18.34758 -17.69324 -17.04688 -16.72013 -16.46444 -16.03565 -15.50550 -14.92593 -14.87172 -14.37638 -14.30151 -13.96428 -13.92447 -13.69976 -13.56746 -13.21037 -12.97581 -12.79803 -12.69744 -12.57852 -12.39091 -12.21430 -12.10226 -12.05438 -11.93649 -11.71425 -11.59670 -11.33339 -11.16045 -10.54358 -9.72352 -9.37686 -8.84995 -8.14504 -6.21968 0.23905 0.40398 1.16838 1.39944 1.42526 1.49706 2.41736 2.64935 3.17779 3.47844 3.84905 3.94132 4.04152 4.16305 4.28723 4.35897 4.39829 4.57135 4.60635 4.62953 4.74476 4.85910 4.89421 4.92315 4.98448 5.01891 5.06150 5.12769 5.28947 5.29749 5.31876 5.36534 5.49945 5.51577 5.61201 5.71845 5.79093 5.96225 6.16753 6.52430 6.73086 6.93911 7.46063 8.95173 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.006298 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.884229 B = 4445.133993 C = 5761.800829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.121 4.121 4 C -0.042 4.042 5 Cl -0.073 7.073 6 C -0.128 4.128 7 C -0.107 4.107 8 C -0.075 4.075 9 C 0.093 3.907 10 N -0.522 5.522 11 C 0.207 3.793 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.073 3.927 21 C -0.174 4.174 22 C -0.132 4.132 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.027 0.973 31 H 0.010 0.990 32 H -0.034 1.034 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 6.468 12.218 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.069 4.069 5 Cl -0.044 7.044 6 C -0.146 4.146 7 C -0.126 4.126 8 C -0.076 4.076 9 C -0.035 4.035 10 N -0.246 5.246 11 C 0.080 3.920 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.783 3.217 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.035 4.035 21 C -0.233 4.233 22 C -0.189 4.189 23 H 0.107 0.893 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.166 0.834 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.121 0.879 30 H 0.045 0.955 31 H 0.028 0.972 32 H -0.016 1.016 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.217 6.981 11.944 15.167 hybrid contribution 1.123 -0.806 -0.995 1.703 sum -5.093 6.175 10.948 13.562 Atomic orbital electron populations 1.21011 0.88943 1.04616 1.03116 1.19929 0.97785 0.91071 0.96866 1.21107 0.91718 0.99231 1.01905 1.20934 0.92841 0.86845 1.06230 1.98333 1.76842 1.32188 1.97077 1.21063 1.00759 0.90784 1.02027 1.21115 0.94333 0.97758 0.99425 1.19976 0.93304 0.95777 0.98548 1.21056 0.98165 0.92106 0.92147 1.62250 1.11640 1.43314 1.07379 1.19399 0.89372 0.91972 0.91227 1.21436 0.97143 1.44727 0.91784 0.92390 1.25782 0.94930 0.95367 1.03389 1.70068 1.04892 1.48775 1.33686 0.85615 0.77726 0.78788 0.79570 1.19779 1.21177 1.19229 1.21704 0.92538 0.90047 0.99244 1.22366 1.00937 0.99461 1.00490 1.21842 0.95636 1.01145 1.00317 0.89314 0.90996 0.89701 0.83377 0.84495 0.86278 0.87881 0.95523 0.97162 1.01600 0.93066 0.92217 0.91586 0.91072 0.95379 0.92397 0.90962 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.38 71.23 0.67 -2.27 16 2 C -0.06 -1.69 5.88 -19.87 -0.12 -1.80 16 3 C -0.12 -3.49 9.50 22.29 0.21 -3.27 16 4 C -0.04 -1.27 6.32 22.32 0.14 -1.13 16 5 Cl -0.07 -1.94 28.96 -2.72 -0.08 -2.02 16 6 C -0.13 -4.11 9.83 22.29 0.22 -3.90 16 7 C -0.11 -3.76 8.59 22.27 0.19 -3.57 16 8 C -0.08 -2.57 4.84 -19.86 -0.10 -2.67 16 9 C 0.09 3.08 2.86 85.56 0.25 3.32 16 10 N -0.52 -20.68 3.61 -880.04 -3.17 -23.85 16 11 C 0.21 10.60 4.47 85.56 0.38 10.99 16 12 C -0.51 -28.76 8.54 25.60 0.22 -28.54 16 13 H 0.06 3.21 7.56 -2.91 -0.02 3.19 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 16 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 C 0.07 2.51 2.81 44.92 0.13 2.64 16 21 C -0.17 -5.44 8.40 71.98 0.60 -4.84 16 22 C -0.13 -3.30 8.01 71.98 0.58 -2.73 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 1.61 8.11 -2.38 -0.02 1.59 16 25 H 0.08 2.28 3.94 -2.38 -0.01 2.28 16 26 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 27 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 28 H 0.12 4.22 8.02 -2.91 -0.02 4.20 16 29 H 0.10 2.79 5.15 -2.38 -0.01 2.78 16 30 H 0.03 0.93 7.16 -2.39 -0.02 0.91 16 31 H 0.01 0.58 6.36 -2.39 -0.02 0.56 16 32 H -0.03 -1.87 6.26 -2.39 -0.01 -1.88 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.06 2.41 7.13 -2.39 -0.02 2.39 16 35 H 0.07 1.79 7.00 -2.39 -0.02 1.77 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.03 1.05 6.42 -2.38 -0.02 1.03 16 38 H 0.06 1.49 7.69 -2.39 -0.02 1.47 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.44 5.96 -2.38 -0.01 1.43 16 Total: -1.00 -63.31 327.20 3.92 -59.38 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.03 Total: 12.81 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.83 Total: -37.14 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.89 Total: -79.96 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -63.31 3.92 -59.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546653757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.739 kcal (2) G-P(sol) polarization free energy of solvation -63.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds