Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 119.99518 * 2 1 4 4 C 1.38332 * 119.98784 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 120.01094 * 180.02562 * 4 3 2 6 6 C 1.38373 * 119.97387 * 359.97438 * 4 3 2 7 7 C 1.38194 * 119.98697 * 359.97438 * 6 4 3 8 8 C 1.50700 * 119.99381 * 179.97438 * 7 6 4 9 9 N 1.46906 * 109.47256 * 264.31200 * 8 7 6 10 10 C 1.46906 * 110.99954 * 75.93682 * 9 8 7 11 11 C 1.50699 * 109.46942 * 190.00163 * 10 9 8 12 12 H 1.08000 * 119.99648 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99642 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00237 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99792 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47208 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47279 * 119.99647 * 15 13 11 18 18 H 1.48498 * 109.47426 * 239.99725 * 15 13 11 19 19 C 1.46889 * 111.00029 * 199.89271 * 9 8 7 20 20 C 1.52998 * 109.47218 * 309.19014 * 19 9 8 21 21 C 1.53000 * 109.47269 * 69.18879 * 19 9 8 22 22 C 1.38221 * 119.99368 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.46452 * 269.97631 * 1 2 3 24 24 H 1.08999 * 109.47044 * 29.97266 * 1 2 3 25 25 H 1.08999 * 109.47216 * 149.97585 * 1 2 3 26 26 H 1.08000 * 120.00292 * 0.04658 * 3 2 1 27 27 H 1.07999 * 120.00602 * 180.02562 * 6 4 3 28 28 H 1.08999 * 109.46727 * 24.31016 * 8 7 6 29 29 H 1.08991 * 109.46974 * 144.31087 * 8 7 6 30 30 H 1.08997 * 109.46847 * 310.00198 * 10 9 8 31 31 H 1.08998 * 109.46599 * 70.00236 * 10 9 8 32 32 H 0.97001 * 119.99910 * 179.97438 * 14 13 11 33 33 H 1.09006 * 109.47489 * 189.19140 * 19 9 8 34 34 H 1.09003 * 109.47486 * 59.99904 * 20 19 9 35 35 H 1.09004 * 109.47301 * 180.02562 * 20 19 9 36 36 H 1.08997 * 109.47391 * 300.00038 * 20 19 9 37 37 H 1.09001 * 109.47332 * 54.42539 * 21 19 9 38 38 H 1.09007 * 109.47234 * 174.42479 * 21 19 9 39 39 H 1.09000 * 109.47015 * 294.42270 * 21 19 9 40 40 H 1.07998 * 119.98457 * 0.25369 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5814 1.1971 -0.0005 5 17 4.4499 2.7002 0.0001 6 6 4.2726 -0.0017 -0.0005 7 6 3.5806 -1.1979 0.0005 8 6 4.3332 -2.5036 0.0000 9 7 4.4573 -2.9967 -1.3783 10 6 5.4819 -2.2456 -2.1160 11 6 5.4128 -2.6048 -3.5779 12 1 4.6807 -3.3192 -3.9244 13 6 6.2843 -2.0214 -4.4729 14 7 7.1755 -1.1511 -4.0510 15 14 6.1992 -2.4671 -6.2850 16 1 5.1184 -3.4626 -6.4996 17 1 5.9143 -1.2469 -7.0820 18 1 7.4975 -3.0465 -6.7138 19 6 4.7440 -4.4372 -1.3982 20 6 5.9258 -4.7348 -0.4732 21 6 3.5134 -5.2089 -0.9176 22 6 2.1980 -1.1971 -0.0005 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6581 2.1325 0.0008 27 1 5.3526 -0.0024 -0.0005 28 1 5.3265 -2.3505 0.4218 29 1 3.7923 -3.2349 0.6002 30 1 5.3059 -1.1767 -1.9957 31 1 6.4681 -2.4976 -1.7261 32 1 7.7888 -0.7410 -4.6807 33 1 4.9917 -4.7444 -2.4143 34 1 5.6783 -4.4276 0.5430 35 1 6.1389 -5.8036 -0.4882 36 1 6.8026 -4.1850 -0.8154 37 1 2.6482 -4.9216 -1.5151 38 1 3.6905 -6.2790 -1.0257 39 1 3.3248 -4.9759 0.1303 40 1 1.6576 -2.1322 -0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552029656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 5.443533 kcal Electronic energy + Delta-G solvation = -20162.094368 eV Core-core repulsion = 17194.965189 eV Total energy + Delta-G solvation = -2967.129179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42830 -37.55289 -36.18187 -33.05126 -32.77262 -31.38588 -30.07816 -27.23387 -26.84055 -26.61532 -24.63077 -22.28715 -21.63698 -20.68654 -18.66070 -16.39830 -16.20264 -15.61134 -15.40095 -14.69290 -14.67682 -14.10048 -13.72840 -13.53483 -13.06093 -12.95279 -12.56401 -12.53029 -12.40317 -12.18471 -11.98411 -11.58011 -11.44223 -11.08503 -11.07744 -10.95891 -10.82416 -10.66728 -10.63075 -10.53237 -10.39849 -10.01187 -9.73752 -9.12929 -8.42612 -8.37467 -8.27972 -7.21800 -5.99871 -4.00163 1.50804 1.56783 2.42360 3.32035 3.39803 3.43990 3.87752 4.45512 4.91200 4.94223 5.12271 5.29998 5.36114 5.47141 5.49529 5.54473 5.64003 5.64957 5.74894 5.77239 5.91299 5.97584 5.99143 6.04939 6.19155 6.24848 6.26725 6.31180 6.51445 6.53350 6.67778 6.76603 6.85780 6.92803 7.13149 7.35822 7.41556 7.82851 8.13160 8.23512 8.56835 9.07053 9.63436 11.10949 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.006250 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.862820 B = 4478.873222 C = 5603.279543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.028 4.028 5 Cl -0.081 7.081 6 C -0.099 4.099 7 C -0.041 4.041 8 C 0.088 3.912 9 N -0.523 5.523 10 C 0.189 3.811 11 C -0.504 4.504 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.080 3.920 20 C -0.181 4.181 21 C -0.140 4.140 22 C -0.095 4.095 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.035 0.965 31 H -0.006 1.006 32 H 0.260 0.740 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 0.186 10.804 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.055 4.055 5 Cl -0.052 7.052 6 C -0.118 4.118 7 C -0.042 4.042 8 C -0.040 4.040 9 N -0.247 5.247 10 C 0.064 3.936 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.029 4.029 20 C -0.240 4.240 21 C -0.198 4.198 22 C -0.114 4.114 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.777 0.501 10.490 14.348 hybrid contribution 1.097 -0.008 -0.748 1.328 sum -8.680 0.494 9.742 13.057 Atomic orbital electron populations 1.20737 0.90958 1.02874 1.01992 1.19746 0.95957 0.92487 1.00154 1.20760 0.91808 0.98298 1.03173 1.20800 0.92235 0.86805 1.05625 1.98347 1.77057 1.32780 1.97047 1.21001 1.00567 0.90342 0.99933 1.19803 0.93594 0.94506 0.96314 1.21034 0.97489 0.92498 0.93016 1.62348 1.50178 1.02368 1.09836 1.19821 0.87135 0.93812 0.92857 1.21168 1.16578 1.24636 0.91899 0.91954 1.24956 0.95477 0.95222 0.98851 1.69961 1.20253 1.28784 1.34619 0.86513 0.77735 0.78281 0.85333 1.19702 1.21076 1.21181 1.21618 0.92421 0.88654 1.00185 1.22455 1.00810 1.01034 0.99686 1.21868 0.98946 0.98676 1.00319 1.20908 0.93538 0.97400 0.99555 0.91404 0.91673 0.91314 0.85692 0.85182 0.94466 0.90813 0.94731 0.98860 0.93061 0.88753 0.93493 0.93244 0.92041 0.92188 0.93299 0.93692 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.08 -1.16 5.88 -104.63 -0.62 -1.77 16 3 C -0.12 -1.78 9.49 -39.55 -0.38 -2.15 16 4 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 5 Cl -0.08 -1.26 28.96 -51.86 -1.50 -2.77 16 6 C -0.10 -1.77 8.20 -39.55 -0.32 -2.09 16 7 C -0.04 -0.71 5.04 -104.63 -0.53 -1.24 16 8 C 0.09 1.52 3.65 -4.97 -0.02 1.50 16 9 N -0.52 -10.71 4.34 -229.52 -1.00 -11.71 16 10 C 0.19 4.76 4.45 -4.97 -0.02 4.74 16 11 C -0.50 -13.98 8.32 -34.44 -0.29 -14.26 16 12 H 0.06 1.72 7.22 -52.49 -0.38 1.34 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.08 1.46 2.76 -67.72 -0.19 1.28 16 20 C -0.18 -3.02 8.49 37.16 0.32 -2.71 16 21 C -0.14 -2.07 9.11 37.16 0.34 -1.73 16 22 C -0.10 -1.45 9.38 -39.58 -0.37 -1.82 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.13 2.42 7.99 -52.49 -0.42 2.00 16 28 H 0.04 0.66 7.25 -51.93 -0.38 0.29 16 29 H 0.07 1.11 6.00 -51.93 -0.31 0.80 16 30 H 0.03 0.95 6.35 -51.93 -0.33 0.62 16 31 H -0.01 -0.17 6.57 -51.93 -0.34 -0.51 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.09 1.97 6.61 -51.93 -0.34 1.62 16 34 H 0.05 0.71 6.66 -51.93 -0.35 0.36 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.17 6.71 -51.93 -0.35 0.83 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.60 6.59 -51.93 -0.34 0.26 16 40 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -29.46 335.10 -9.84 -39.30 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.05 Total: -0.50 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.06 Total: -20.24 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.26 Total: -37.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.46 -9.84 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552029656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.743 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds