Wall clock time and date at job start Tue Mar 31 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00003 * 2 1 4 4 H 1.08998 * 109.47233 * 29.99778 * 3 2 1 5 5 C 1.53003 * 109.46784 * 269.99827 * 3 2 1 6 6 C 1.50698 * 109.47387 * 150.00145 * 3 2 1 7 7 O 1.21298 * 119.99980 * 12.32717 * 6 3 2 8 8 N 1.34779 * 120.00258 * 192.33710 * 6 3 2 9 9 C 1.46496 * 119.99929 * 5.28218 * 8 6 3 10 10 C 1.50691 * 109.47463 * 264.22235 * 9 8 6 11 11 H 1.08005 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00090 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00024 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99903 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47410 * 89.99823 * 14 12 10 16 16 H 1.48505 * 109.46674 * 210.00029 * 14 12 10 17 17 H 1.48498 * 109.47046 * 329.99585 * 14 12 10 18 18 C 1.40030 * 119.99759 * 185.28857 * 8 6 3 19 19 C 1.38848 * 120.04883 * 353.23423 * 18 8 6 20 20 C 1.38114 * 119.95574 * 180.25794 * 19 18 8 21 21 C 1.38478 * 120.04239 * 359.46680 * 20 19 18 22 22 F 1.35098 * 119.95641 * 180.23794 * 21 20 19 23 23 C 1.38474 * 120.08902 * 0.50988 * 21 20 19 24 24 C 1.38112 * 120.04939 * 359.76484 * 23 21 20 25 25 H 1.08992 * 109.46819 * 60.00119 * 1 2 3 26 26 H 1.08999 * 109.46501 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46758 * 300.00382 * 1 2 3 28 28 H 1.08999 * 109.47381 * 302.20811 * 5 3 2 29 29 H 1.08997 * 109.47337 * 62.21250 * 5 3 2 30 30 H 1.09001 * 109.46772 * 182.21376 * 5 3 2 31 31 H 1.09004 * 109.46886 * 24.22325 * 9 8 6 32 32 H 1.08996 * 109.47065 * 144.21440 * 9 8 6 33 33 H 0.97000 * 119.99952 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.02237 * 359.97438 * 19 18 8 35 35 H 1.07990 * 119.98078 * 179.71922 * 20 19 18 36 36 H 1.07999 * 119.97999 * 179.75406 * 23 21 20 37 37 H 1.07994 * 120.02620 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2640 0.7104 7 8 3.8529 0.1973 0.9731 8 7 3.9553 2.4121 1.0540 9 6 3.2832 3.6964 0.8420 10 6 3.7321 4.2880 -0.4692 11 1 4.4470 3.7603 -1.0832 12 6 3.2310 5.5034 -0.8847 13 7 2.3609 6.1463 -0.1369 14 14 3.7870 6.2364 -2.5105 15 1 2.8852 5.7743 -3.5960 16 1 3.7417 7.7184 -2.4265 17 1 5.1761 5.7993 -2.8013 18 6 5.2386 2.3773 1.6134 19 6 5.8198 1.1606 1.9446 20 6 7.0834 1.1288 2.5013 21 6 7.7750 2.3086 2.7189 22 9 9.0129 2.2752 3.2590 23 6 7.1973 3.5230 2.3888 24 6 5.9316 3.5596 1.8372 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.8513 1.0565 -1.9677 29 1 1.2527 1.8391 -1.9448 30 1 2.6970 2.7503 -1.4428 31 1 2.2043 3.5427 0.8208 32 1 3.5372 4.3777 1.6540 33 1 2.0087 7.0015 -0.4290 34 1 5.2824 0.2400 1.7713 35 1 7.5341 0.1831 2.7632 36 1 7.7366 4.4423 2.5629 37 1 5.4812 4.5069 1.5803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553942811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:29 Heat of formation + Delta-G solvation = -82.130767 kcal Electronic energy + Delta-G solvation = -22477.328852 eV Core-core repulsion = 18942.232697 eV Total energy + Delta-G solvation = -3535.096156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.43529 -40.43895 -38.23472 -36.96545 -35.41367 -32.86155 -31.35264 -30.61981 -28.76793 -27.51707 -26.52247 -23.91939 -23.61957 -22.34395 -21.50995 -19.22447 -17.40949 -17.21815 -16.79356 -16.56033 -15.93486 -15.37131 -15.21767 -15.10209 -14.75187 -14.25220 -14.16440 -13.92624 -13.04838 -12.97872 -12.74349 -12.63836 -12.41719 -12.21197 -12.08711 -11.83742 -11.52490 -11.28321 -11.14181 -10.94358 -10.80348 -10.57352 -10.37923 -10.13261 -9.54496 -9.22408 -8.82788 -8.62307 -8.60913 -7.26466 -6.41662 -4.49649 1.57488 1.74497 3.02355 3.10318 3.19425 3.19874 3.25479 4.11543 4.22321 4.27720 4.77184 4.90150 4.92381 5.25639 5.28458 5.34901 5.43672 5.53454 5.64275 5.76289 5.79870 5.83226 6.02697 6.20263 6.28455 6.36225 6.55935 6.66693 6.71994 6.79868 6.90745 6.97507 7.12566 7.33192 7.50687 7.64501 7.72747 7.94369 8.52405 8.65772 9.16556 10.63820 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.007739 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.953621 B = 3617.080214 C = 5636.867460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.081 3.919 4 H 0.089 0.911 5 C -0.192 4.192 6 C 0.521 3.479 7 O -0.524 6.524 8 N -0.532 5.532 9 C 0.224 3.776 10 C -0.544 4.544 11 H 0.069 0.931 12 C 0.072 3.928 13 N -0.882 5.882 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.163 3.837 19 C -0.155 4.155 20 C -0.138 4.138 21 C 0.051 3.949 22 F -0.153 7.153 23 C -0.135 4.135 24 C -0.115 4.115 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.269 0.731 34 H 0.188 0.812 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 -4.997 1.813 5.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.020 3.980 4 H 0.107 0.893 5 C -0.249 4.249 6 C 0.311 3.689 7 O -0.402 6.402 8 N -0.252 5.252 9 C 0.105 3.895 10 C -0.581 4.581 11 H 0.087 0.913 12 C -0.134 4.134 13 N -0.519 5.519 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.195 1.195 18 C 0.067 3.933 19 C -0.174 4.174 20 C -0.157 4.157 21 C 0.031 3.969 22 F -0.132 7.132 23 C -0.155 4.155 24 C -0.135 4.135 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.204 0.796 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.059 -5.531 1.939 5.862 hybrid contribution 0.225 0.966 -0.825 1.290 sum 0.166 -4.565 1.115 4.702 Atomic orbital electron populations 1.22802 0.81204 1.02473 1.00094 1.87966 1.19211 1.26494 1.95118 1.21895 0.92681 0.85431 0.97961 0.89308 1.22681 1.03006 1.06183 0.93016 1.20533 0.87066 0.83050 0.78276 1.90241 1.65345 1.30551 1.54104 1.45953 1.14033 1.09441 1.55815 1.19816 0.93300 0.78019 0.98377 1.21316 1.27181 1.05089 1.04561 0.91267 1.24928 0.94461 0.96339 0.97631 1.69905 1.28891 1.15613 1.37503 0.86504 0.79599 0.78470 0.83169 1.20187 1.20864 1.19455 1.18075 0.85579 0.94072 0.95564 1.22728 0.95249 1.00547 0.98911 1.21051 0.95746 0.96712 1.02212 1.17736 0.81360 0.95028 1.02795 1.91421 1.40090 1.97461 1.84206 1.20862 0.96168 0.96488 1.01946 1.21022 0.93778 0.98723 0.99967 0.93879 0.89692 0.94078 0.92528 0.92350 0.85504 0.93356 0.93425 0.92090 0.79590 0.85405 0.85124 0.83109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.49 16 2 O -0.37 -6.49 9.91 -54.83 -0.54 -7.03 16 3 C 0.08 1.46 2.34 -27.88 -0.07 1.40 16 4 H 0.09 1.53 6.20 -51.93 -0.32 1.20 16 5 C -0.19 -3.40 9.41 37.16 0.35 -3.05 16 6 C 0.52 10.61 6.94 -10.99 -0.08 10.53 16 7 O -0.52 -11.41 12.95 -14.06 -0.18 -11.60 16 8 N -0.53 -10.85 2.69 -114.72 -0.31 -11.16 16 9 C 0.22 4.78 4.11 -5.20 -0.02 4.76 16 10 C -0.54 -12.46 5.90 -34.44 -0.20 -12.66 16 11 H 0.07 1.65 7.64 -52.48 -0.40 1.25 16 12 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.88 -21.86 13.29 55.43 0.74 -21.12 16 14 Si 0.90 18.86 29.54 -169.99 -5.02 13.84 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 C 0.16 3.24 6.47 -83.66 -0.54 2.70 16 19 C -0.15 -2.93 9.05 -39.40 -0.36 -3.28 16 20 C -0.14 -2.33 10.02 -39.54 -0.40 -2.72 16 21 C 0.05 0.86 7.30 -39.41 -0.29 0.58 16 22 F -0.15 -2.52 17.26 2.25 0.04 -2.48 16 23 C -0.14 -2.27 10.02 -39.54 -0.40 -2.67 16 24 C -0.11 -2.13 9.02 -39.40 -0.36 -2.49 16 25 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 30 H 0.13 2.53 4.16 -51.93 -0.22 2.31 16 31 H 0.05 1.04 5.94 -51.93 -0.31 0.73 16 32 H 0.05 1.07 6.86 -51.93 -0.36 0.71 16 33 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.19 3.72 4.53 -56.23 -0.25 3.46 16 35 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.15 2.92 6.14 -52.49 -0.32 2.59 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -25.90 309.92 -6.21 -32.12 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.25 Total: 6.61 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.35 Total: -3.83 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.43 Total: -32.29 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.73 Total: -18.63 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.90 -6.21 -32.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553942811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.014 kcal (2) G-P(sol) polarization free energy of solvation -25.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds