Wall clock time and date at job start Tue Mar 31 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47077 * 2 1 4 4 C 1.35047 * 124.88099 * 125.58979 * 3 2 1 5 5 C 1.35353 * 107.24602 * 180.22932 * 4 3 2 6 6 C 1.41554 * 105.49732 * 359.60386 * 5 4 3 7 7 C 1.47597 * 126.52015 * 180.11531 * 6 5 4 8 8 O 1.21605 * 120.00526 * 3.09459 * 7 6 5 9 9 N 1.34782 * 119.99965 * 183.09766 * 7 6 5 10 10 C 1.36908 * 120.00103 * 183.86320 * 9 7 6 11 11 H 1.08003 * 119.99798 * 210.04013 * 10 9 7 12 12 C 1.39017 * 120.00104 * 30.03757 * 10 9 7 13 13 N 1.31377 * 120.00147 * 17.07913 * 12 10 9 14 14 Si 1.86805 * 119.99989 * 197.07414 * 12 10 9 15 15 H 1.48505 * 109.46928 * 94.99696 * 14 12 10 16 16 H 1.48493 * 109.47057 * 214.99721 * 14 12 10 17 17 H 1.48499 * 109.47047 * 334.99843 * 14 12 10 18 18 C 1.46499 * 119.99548 * 3.85902 * 9 7 6 19 19 C 1.50704 * 109.46919 * 83.68869 * 18 9 7 20 20 O 1.20834 * 119.99920 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00333 * 179.97438 * 19 18 9 22 22 C 1.45192 * 117.00598 * 179.97438 * 21 19 18 23 23 N 1.28466 * 124.88366 * 305.55436 * 3 2 1 24 24 H 1.09011 * 109.47015 * 65.05596 * 1 2 3 25 25 H 1.09000 * 109.47170 * 185.05359 * 1 2 3 26 26 H 1.09001 * 109.47640 * 305.05938 * 1 2 3 27 27 H 1.08992 * 109.47528 * 240.00081 * 2 1 3 28 28 H 1.08998 * 109.46994 * 119.99563 * 2 1 3 29 29 H 1.08004 * 126.37976 * 359.96663 * 4 3 2 30 30 H 1.07993 * 127.25056 * 179.73459 * 5 4 3 31 31 H 0.97006 * 120.00220 * 184.94557 * 13 12 10 32 32 H 1.09002 * 109.46966 * 203.68228 * 18 9 7 33 33 H 1.08996 * 109.47764 * 323.68509 * 18 9 7 34 34 H 1.08993 * 109.47791 * 180.02562 * 22 21 19 35 35 H 1.09001 * 109.46940 * 300.00090 * 22 21 19 36 36 H 1.09006 * 109.47417 * 59.99619 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8836 1.8945 0.9009 5 6 3.0846 3.1916 0.5705 6 6 2.2957 3.4145 -0.5835 7 6 2.1742 4.6800 -1.3334 8 8 2.8329 5.6477 -1.0041 9 7 1.3329 4.7631 -2.3832 10 6 1.2781 5.9110 -3.1272 11 1 0.3567 6.1960 -3.6132 12 6 2.4084 6.7098 -3.2572 13 7 3.5937 6.2231 -2.9667 14 14 2.2421 8.4751 -3.8450 15 1 2.1699 9.3828 -2.6718 16 1 3.4195 8.8331 -4.6760 17 1 1.0047 8.6128 -4.6543 18 6 0.4773 3.6251 -2.7280 19 6 -0.7665 3.6559 -1.8775 20 8 -0.9220 4.5379 -1.0663 21 8 -1.7016 2.7038 -2.0212 22 6 -2.8731 2.7962 -1.1685 23 7 1.6855 2.2782 -0.8574 24 1 -0.3634 0.4334 -0.9319 25 1 -0.3633 -1.0237 0.0905 26 1 -0.3634 0.5903 0.8412 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3287 1.3691 1.7329 30 1 3.7157 3.9054 1.0788 31 1 4.3734 6.7999 -2.9881 32 1 0.1994 3.6851 -3.7803 33 1 1.0179 2.6960 -2.5474 34 1 -3.5471 1.9677 -1.3857 35 1 -2.5664 2.7502 -0.1235 36 1 -3.3852 3.7402 -1.3555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579594365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:43 Heat of formation + Delta-G solvation = 4.513978 kcal Electronic energy + Delta-G solvation = -23257.076266 eV Core-core repulsion = 19745.657270 eV Total energy + Delta-G solvation = -3511.418996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.95918 -39.75495 -37.83947 -35.75228 -34.27042 -33.82286 -31.89414 -30.07315 -29.40420 -28.36998 -26.24810 -25.21645 -23.53677 -21.62054 -20.83825 -20.33226 -19.15474 -17.16572 -16.94631 -16.54410 -16.10514 -15.78087 -15.42310 -15.26914 -14.40349 -14.23190 -13.85106 -13.38789 -13.22575 -12.90467 -12.76060 -12.50266 -12.13823 -12.05156 -12.01014 -11.60078 -11.49388 -11.34124 -11.19575 -10.85615 -10.47332 -10.30414 -10.13543 -9.87179 -9.71516 -9.04021 -8.60946 -8.30209 -8.10799 -7.01949 -5.92756 -3.74895 2.41055 2.93835 2.96320 3.04077 3.29459 3.41462 3.47437 3.48917 4.38582 4.59004 4.90238 4.96872 5.08490 5.12112 5.21526 5.33771 5.38667 5.42359 5.47442 5.52503 5.60471 5.76770 5.87200 5.99166 6.08714 6.14432 6.36110 6.40478 6.49081 6.96129 7.14410 7.36973 7.61758 8.23134 8.51777 8.61458 9.04411 9.23622 9.67094 10.39821 11.03356 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.007382 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.362759 B = 3791.947023 C = 4947.001208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.302 5.302 4 C -0.029 4.029 5 C -0.193 4.193 6 C 0.036 3.964 7 C 0.522 3.478 8 O -0.495 6.495 9 N -0.423 5.423 10 C -0.325 4.325 11 H 0.085 0.915 12 C 0.043 3.957 13 N -0.794 5.794 14 Si 0.916 3.084 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.108 3.892 19 C 0.446 3.554 20 O -0.497 6.497 21 O -0.368 6.368 22 C 0.037 3.963 23 N -0.296 5.296 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 -14.773 4.475 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.090 5.090 4 C -0.172 4.172 5 C -0.221 4.221 6 C -0.125 4.125 7 C 0.309 3.691 8 O -0.367 6.367 9 N -0.144 5.144 10 C -0.453 4.453 11 H 0.103 0.897 12 C -0.167 4.167 13 N -0.430 5.430 14 Si 0.743 3.257 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.020 4.020 19 C 0.287 3.713 20 O -0.382 6.382 21 O -0.285 6.285 22 C -0.057 4.057 23 N -0.130 5.130 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.187 0.813 30 H 0.170 0.830 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.567 -14.598 4.143 16.535 hybrid contribution 0.329 1.096 0.695 1.339 sum -6.237 -13.502 4.838 15.640 Atomic orbital electron populations 1.22065 0.93641 1.02451 1.04253 1.21776 0.96298 0.77959 1.03778 1.45561 1.33106 1.10038 1.20266 1.22641 1.00026 0.95670 0.98871 1.21707 1.05287 0.95577 0.99546 1.22935 0.98281 0.93310 0.98004 1.16349 0.85832 0.85095 0.81849 1.90625 1.45507 1.36658 1.63953 1.42865 1.34306 1.12006 1.25185 1.19223 0.96560 0.99893 1.29589 0.89707 1.25015 0.94115 0.99767 0.97848 1.70072 0.98246 1.35490 1.39227 0.86106 0.77364 0.83994 0.78252 1.20618 1.21321 1.19850 1.21432 0.87796 0.95337 0.97398 1.25206 0.84611 0.78391 0.83081 1.90646 1.77200 1.35522 1.34796 1.86522 1.30063 1.51659 1.60274 1.23057 0.86006 1.02390 0.94296 1.73480 1.24742 0.98634 1.16187 0.90386 0.90918 0.92280 0.89533 0.88828 0.81289 0.82963 0.92574 0.87700 0.84970 0.89003 0.92783 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.99 37.16 0.37 -1.29 16 2 C 0.12 1.26 7.12 -4.04 -0.03 1.23 16 3 N -0.30 -4.78 3.41 -61.33 -0.21 -4.99 16 4 C -0.03 -0.45 11.40 -17.17 -0.20 -0.65 16 5 C -0.19 -3.91 10.81 -39.35 -0.43 -4.34 16 6 C 0.04 0.85 6.82 -82.78 -0.56 0.28 16 7 C 0.52 14.84 6.72 -12.44 -0.08 14.76 16 8 O -0.50 -15.79 13.42 5.27 0.07 -15.72 16 9 N -0.42 -11.50 2.16 -117.25 -0.25 -11.76 16 10 C -0.33 -9.35 9.43 -15.00 -0.14 -9.49 16 11 H 0.09 2.33 7.89 -52.48 -0.41 1.92 16 12 C 0.04 1.26 4.51 -17.46 -0.08 1.18 16 13 N -0.79 -24.19 10.34 55.50 0.57 -23.62 16 14 Si 0.92 22.49 29.59 -169.99 -5.03 17.46 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.11 2.36 5.58 -5.19 -0.03 2.33 16 19 C 0.45 9.46 7.38 36.01 0.27 9.73 16 20 O -0.50 -12.38 16.03 -18.76 -0.30 -12.68 16 21 O -0.37 -6.30 10.56 -39.25 -0.41 -6.71 16 22 C 0.04 0.50 10.56 101.05 1.07 1.57 16 23 N -0.30 -5.90 7.70 33.41 0.26 -5.65 16 24 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 29 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.15 3.01 8.06 -52.49 -0.42 2.59 16 31 H 0.26 7.69 8.32 -40.82 -0.34 7.35 16 32 H 0.11 2.06 7.99 -51.93 -0.41 1.64 16 33 H 0.13 2.76 5.12 -51.93 -0.27 2.49 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.75 8.13 -51.93 -0.42 0.32 16 36 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -37.91 315.28 -4.85 -42.76 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.45 Total: 0.84 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 0.16 Total: 15.31 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.37 Total: -46.02 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.64 Total: -35.11 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.91 -4.85 -42.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579594365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.278 kcal (2) G-P(sol) polarization free energy of solvation -37.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds