Wall clock time and date at job start Tue Mar 31 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47077 * 2 1 4 4 C 1.35047 * 124.88099 * 125.58979 * 3 2 1 5 5 C 1.35353 * 107.24602 * 180.22932 * 4 3 2 6 6 C 1.41554 * 105.49732 * 359.60386 * 5 4 3 7 7 C 1.47597 * 126.52015 * 180.11531 * 6 5 4 8 8 O 1.21605 * 120.00526 * 3.09459 * 7 6 5 9 9 N 1.34782 * 119.99965 * 183.09766 * 7 6 5 10 10 C 1.36908 * 120.00103 * 183.86320 * 9 7 6 11 11 H 1.08003 * 119.99798 * 210.04013 * 10 9 7 12 12 C 1.39017 * 120.00104 * 30.03757 * 10 9 7 13 13 N 1.31377 * 120.00147 * 17.07913 * 12 10 9 14 14 Si 1.86805 * 119.99989 * 197.07414 * 12 10 9 15 15 H 1.48505 * 109.46928 * 94.99696 * 14 12 10 16 16 H 1.48493 * 109.47057 * 214.99721 * 14 12 10 17 17 H 1.48499 * 109.47047 * 334.99843 * 14 12 10 18 18 C 1.46499 * 119.99548 * 3.85902 * 9 7 6 19 19 C 1.50704 * 109.46919 * 83.68869 * 18 9 7 20 20 O 1.20834 * 119.99920 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00333 * 179.97438 * 19 18 9 22 22 C 1.45192 * 117.00598 * 179.97438 * 21 19 18 23 23 N 1.28466 * 124.88366 * 305.55436 * 3 2 1 24 24 H 1.09011 * 109.47015 * 65.05596 * 1 2 3 25 25 H 1.09000 * 109.47170 * 185.05359 * 1 2 3 26 26 H 1.09001 * 109.47640 * 305.05938 * 1 2 3 27 27 H 1.08992 * 109.47528 * 240.00081 * 2 1 3 28 28 H 1.08998 * 109.46994 * 119.99563 * 2 1 3 29 29 H 1.08004 * 126.37976 * 359.96663 * 4 3 2 30 30 H 1.07993 * 127.25056 * 179.73459 * 5 4 3 31 31 H 0.97006 * 120.00220 * 184.94557 * 13 12 10 32 32 H 1.09002 * 109.46966 * 203.68228 * 18 9 7 33 33 H 1.08996 * 109.47764 * 323.68509 * 18 9 7 34 34 H 1.08993 * 109.47791 * 180.02562 * 22 21 19 35 35 H 1.09001 * 109.46940 * 300.00090 * 22 21 19 36 36 H 1.09006 * 109.47417 * 59.99619 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8836 1.8945 0.9009 5 6 3.0846 3.1916 0.5705 6 6 2.2957 3.4145 -0.5835 7 6 2.1742 4.6800 -1.3334 8 8 2.8329 5.6477 -1.0041 9 7 1.3329 4.7631 -2.3832 10 6 1.2781 5.9110 -3.1272 11 1 0.3567 6.1960 -3.6132 12 6 2.4084 6.7098 -3.2572 13 7 3.5937 6.2231 -2.9667 14 14 2.2421 8.4751 -3.8450 15 1 2.1699 9.3828 -2.6718 16 1 3.4195 8.8331 -4.6760 17 1 1.0047 8.6128 -4.6543 18 6 0.4773 3.6251 -2.7280 19 6 -0.7665 3.6559 -1.8775 20 8 -0.9220 4.5379 -1.0663 21 8 -1.7016 2.7038 -2.0212 22 6 -2.8731 2.7962 -1.1685 23 7 1.6855 2.2782 -0.8574 24 1 -0.3634 0.4334 -0.9319 25 1 -0.3633 -1.0237 0.0905 26 1 -0.3634 0.5903 0.8412 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3287 1.3691 1.7329 30 1 3.7157 3.9054 1.0788 31 1 4.3734 6.7999 -2.9881 32 1 0.1994 3.6851 -3.7803 33 1 1.0179 2.6960 -2.5474 34 1 -3.5471 1.9677 -1.3857 35 1 -2.5664 2.7502 -0.1235 36 1 -3.3852 3.7402 -1.3555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579594365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:42 Heat of formation + Delta-G solvation = -22.385997 kcal Electronic energy + Delta-G solvation = -23258.242737 eV Core-core repulsion = 19745.657270 eV Total energy + Delta-G solvation = -3512.585466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.40225 -41.41337 -39.79458 -37.40301 -35.94366 -35.33704 -33.93607 -31.54714 -30.68670 -29.97543 -27.80769 -27.00427 -24.96595 -23.16531 -22.35340 -21.75397 -20.94141 -18.80751 -18.60484 -18.28595 -17.61475 -17.25110 -17.11043 -16.73340 -16.34141 -15.78923 -15.25155 -14.98434 -14.58533 -14.48708 -14.35169 -14.05110 -13.77918 -13.35616 -13.15935 -13.13427 -12.93245 -12.89765 -12.85936 -12.56914 -12.17832 -12.02781 -11.73431 -11.68002 -11.36021 -11.05706 -10.24652 -10.03136 -9.78792 -9.17300 -8.09349 -5.95676 0.91156 1.34309 1.40067 1.40959 1.49521 1.54417 1.76823 1.82925 2.39371 3.01341 3.16091 3.31988 3.57090 4.06279 4.08673 4.14068 4.17196 4.28722 4.34775 4.36650 4.43297 4.48130 4.65908 4.68084 4.85856 4.91085 4.93436 4.99463 5.31770 5.36938 5.39634 5.55468 6.07118 6.18258 6.86712 6.91615 7.05158 7.23139 7.57509 8.32237 8.87540 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.007382 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.362759 B = 3791.947023 C = 4947.001208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.287 5.287 4 C 0.009 3.991 5 C -0.231 4.231 6 C -0.016 4.016 7 C 0.511 3.489 8 O -0.552 6.552 9 N -0.439 5.439 10 C -0.351 4.351 11 H 0.089 0.911 12 C -0.007 4.007 13 N -0.831 5.831 14 Si 0.980 3.020 15 H -0.294 1.294 16 H -0.276 1.276 17 H -0.252 1.252 18 C 0.104 3.896 19 C 0.459 3.541 20 O -0.541 6.541 21 O -0.356 6.356 22 C 0.031 3.969 23 N -0.293 5.293 24 H 0.052 0.948 25 H 0.111 0.889 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.142 0.858 29 H 0.230 0.770 30 H 0.142 0.858 31 H 0.259 0.741 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.049 0.951 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 -18.128 5.085 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.075 5.075 4 C -0.136 4.136 5 C -0.259 4.259 6 C -0.174 4.174 7 C 0.300 3.700 8 O -0.428 6.428 9 N -0.159 5.159 10 C -0.479 4.479 11 H 0.107 0.893 12 C -0.214 4.214 13 N -0.468 5.468 14 Si 0.804 3.196 15 H -0.221 1.221 16 H -0.201 1.201 17 H -0.176 1.176 18 C -0.022 4.022 19 C 0.302 3.698 20 O -0.430 6.430 21 O -0.272 6.272 22 C -0.063 4.063 23 N -0.130 5.130 24 H 0.071 0.929 25 H 0.129 0.871 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.160 0.840 29 H 0.247 0.753 30 H 0.160 0.840 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.068 0.932 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.947 -18.017 4.698 20.245 hybrid contribution 0.596 1.832 0.611 2.021 sum -7.351 -16.186 5.308 18.552 Atomic orbital electron populations 1.22054 0.93375 1.04390 1.02235 1.22445 0.96599 0.74858 1.07080 1.46212 1.31547 1.11194 1.18574 1.23298 0.97708 0.93727 0.98820 1.21858 1.06364 0.98112 0.99583 1.22400 1.01955 0.93167 0.99909 1.17080 0.84864 0.86414 0.81649 1.90552 1.47380 1.39034 1.65835 1.43037 1.35039 1.12884 1.24924 1.19546 0.96718 1.01476 1.30119 0.89313 1.25961 0.93767 1.03768 0.97879 1.70194 0.98829 1.36599 1.41183 0.85131 0.78519 0.78457 0.77471 1.22083 1.20119 1.17575 1.21580 0.87858 0.94125 0.98618 1.24803 0.84890 0.78213 0.81885 1.90633 1.78232 1.37467 1.36619 1.86483 1.30431 1.49596 1.60641 1.23462 0.84839 1.04409 0.93566 1.73297 1.24171 0.98257 1.17249 0.92889 0.87051 0.93715 0.87791 0.84036 0.75331 0.84016 0.93145 0.85854 0.83846 0.84047 0.93201 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.99 71.98 0.72 -1.86 16 2 C 0.11 1.66 7.12 86.38 0.61 2.28 16 3 N -0.29 -8.17 3.41 -347.96 -1.19 -9.36 16 4 C 0.01 0.25 11.40 83.53 0.95 1.20 16 5 C -0.23 -9.45 10.81 22.42 0.24 -9.21 16 6 C -0.02 -0.76 6.82 42.43 0.29 -0.47 16 7 C 0.51 30.67 6.72 86.71 0.58 31.25 16 8 O -0.55 -37.58 13.42 -4.05 -0.05 -37.63 16 9 N -0.44 -24.91 2.16 -643.13 -1.39 -26.29 16 10 C -0.35 -21.01 9.43 84.09 0.79 -20.21 16 11 H 0.09 5.04 7.89 -2.91 -0.02 5.01 16 12 C -0.01 -0.39 4.51 84.95 0.38 -0.01 16 13 N -0.83 -53.36 10.34 21.67 0.22 -53.13 16 14 Si 0.98 47.85 29.59 68.60 2.03 49.88 16 15 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.25 -11.28 7.11 99.48 0.71 -10.57 16 18 C 0.10 4.65 5.58 85.63 0.48 5.13 16 19 C 0.46 19.55 7.38 71.24 0.53 20.07 16 20 O -0.54 -27.63 16.03 21.94 0.35 -27.28 16 21 O -0.36 -11.61 10.56 -51.40 -0.54 -12.15 16 22 C 0.03 0.76 10.56 113.37 1.20 1.95 16 23 N -0.29 -11.47 7.70 -48.20 -0.37 -11.84 16 24 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.14 0.95 8.04 -2.39 -0.02 0.94 16 29 H 0.23 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.14 5.90 8.06 -2.91 -0.02 5.88 16 31 H 0.26 15.96 8.32 -92.70 -0.77 15.19 16 32 H 0.12 4.89 7.99 -2.39 -0.02 4.87 16 33 H 0.14 6.02 5.12 -2.39 -0.01 6.01 16 34 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 36 H 0.05 1.37 8.13 -2.38 -0.02 1.35 16 Total: -1.00 -91.22 315.28 6.93 -84.28 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.09 Total: 13.41 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 6.78 Total: 30.12 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -2.72 Total: -100.63 kcal Atomic # 8 Polarization: -76.82 SS G_CDS: -0.25 Total: -77.07 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -91.22 6.93 -84.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579594365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.897 kcal (2) G-P(sol) polarization free energy of solvation -91.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds