Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.50701 * 109.46992 * 269.99655 * 3 2 1 5 5 C 1.33393 * 125.20065 * 89.99565 * 4 3 2 6 6 C 1.38425 * 114.92007 * 179.97438 * 5 4 3 7 7 C 1.33389 * 114.92135 * 0.02562 * 6 5 4 8 8 S 1.75882 * 125.20483 * 269.69419 * 4 3 2 9 9 C 1.34781 * 119.99832 * 179.97438 * 2 1 3 10 10 O 1.21281 * 120.00142 * 179.97438 * 9 2 1 11 11 C 1.50703 * 120.00021 * 0.02562 * 9 2 1 12 12 C 1.52994 * 109.47165 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47291 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47291 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47165 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00143 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99986 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00234 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46999 * 89.99602 * 19 17 15 21 21 H 1.48498 * 109.46942 * 209.99789 * 19 17 15 22 22 H 1.48498 * 109.46716 * 329.99904 * 19 17 15 23 23 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 24 24 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 25 25 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 26 26 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 27 27 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 28 28 H 1.08005 * 122.54147 * 359.96383 * 5 4 3 29 29 H 1.07995 * 122.53675 * 180.02562 * 6 5 4 30 30 H 1.07999 * 125.20519 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47031 * 299.99740 * 11 9 2 32 32 H 1.08999 * 109.46714 * 59.99599 * 11 9 2 33 33 H 1.09000 * 109.46983 * 299.99830 * 12 11 9 34 34 H 1.08997 * 109.47465 * 59.99658 * 12 11 9 35 35 H 1.09000 * 109.46876 * 299.99783 * 13 12 11 36 36 H 1.08997 * 109.47238 * 59.99406 * 13 12 11 37 37 H 1.09001 * 109.47335 * 300.00126 * 14 13 12 38 38 H 1.08999 * 109.47583 * 60.00078 * 14 13 12 39 39 H 0.97001 * 120.00208 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4489 1.7036 -1.4208 5 6 1.6331 2.4705 -2.1459 6 6 2.0744 2.7406 -3.4298 7 6 3.2482 2.1925 -3.7476 8 16 3.8661 1.2839 -2.3742 9 6 2.1389 -1.1673 0.0005 10 8 3.3517 -1.1673 0.0001 11 6 1.3854 -2.4724 0.0005 12 6 2.3795 -3.6353 0.0005 13 6 1.6145 -4.9603 -0.0001 14 6 2.6087 -6.1232 0.0005 15 6 1.8551 -7.4283 0.0005 16 1 0.7751 -7.4283 0.0005 17 6 2.5444 -8.6224 0.0016 18 7 3.8596 -8.6225 0.0021 19 14 1.6104 -10.2401 0.0009 20 1 1.3645 -10.6691 -1.3994 21 1 2.4122 -11.2749 0.7020 22 1 0.3121 -10.0623 0.6994 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3632 0.8900 0.5137 26 1 3.1500 1.1383 0.5139 27 1 1.6085 2.0283 0.5138 28 1 0.6990 2.8518 -1.7605 29 1 1.5109 3.3489 -4.1218 30 1 3.7457 2.2953 -4.7007 31 1 0.7584 -2.5299 0.8903 32 1 0.7590 -2.5302 -0.8897 33 1 3.0061 -3.5775 -0.8895 34 1 3.0062 -3.5776 0.8904 35 1 0.9876 -5.0183 0.8897 36 1 0.9881 -5.0178 -0.8903 37 1 3.2360 -6.0655 -0.8890 38 1 3.2347 -6.0656 0.8909 39 1 4.3446 -9.4625 0.0025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588254355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -21.526436 kcal Electronic energy + Delta-G solvation = -18958.061431 eV Core-core repulsion = 15991.806453 eV Total energy + Delta-G solvation = -2966.254978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98406 -37.98931 -35.69463 -34.86904 -32.67078 -31.32983 -29.52276 -27.43156 -26.38227 -25.04239 -23.36043 -22.00466 -20.02340 -19.62394 -18.94230 -17.52000 -16.83170 -16.28426 -16.08653 -15.81235 -15.39768 -14.45506 -14.39488 -13.66882 -13.34410 -13.23629 -13.01285 -12.93038 -12.70970 -12.57197 -12.50331 -12.11250 -11.72358 -11.60096 -11.48159 -10.96382 -10.77919 -10.51133 -10.48000 -10.37550 -9.83106 -9.58412 -9.22705 -9.02168 -8.93760 -8.80579 -8.59629 -8.28486 -5.93261 -3.95743 0.77012 1.51150 1.91849 2.45287 2.70667 3.04683 3.35283 3.41203 3.44417 4.49231 4.53347 4.58454 4.86532 4.88389 5.00854 5.13985 5.22814 5.32341 5.34642 5.41705 5.43721 5.44890 5.46652 5.85426 5.90181 6.06622 6.16801 6.22391 6.29688 6.35279 6.57897 6.87031 7.04159 7.20620 7.27168 7.76425 7.92782 8.08379 8.20230 8.50129 9.12026 9.67780 11.18080 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.002835 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.293863 B = 9874.633765 C =10251.607710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.621 5.621 3 C 0.185 3.815 4 C -0.199 4.199 5 C -0.132 4.132 6 C -0.141 4.141 7 C -0.224 4.224 8 S 0.141 5.859 9 C 0.512 3.488 10 O -0.527 6.527 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 26.113 -3.144 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C 0.061 3.939 4 C -0.318 4.318 5 C -0.163 4.163 6 C -0.172 4.172 7 C -0.360 4.360 8 S 0.406 5.594 9 C 0.302 3.698 10 O -0.402 6.402 11 C -0.176 4.176 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.179 0.821 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.902 25.118 -2.863 25.751 hybrid contribution -1.874 -0.014 -0.505 1.941 sum -6.776 25.104 -3.367 26.220 Atomic orbital electron populations 1.21817 0.79217 1.03343 1.02022 1.48035 1.07078 1.05439 1.75035 1.19787 0.98788 0.85536 0.89830 1.24998 0.99583 1.05390 1.01803 1.20077 1.00946 1.01104 0.94217 1.20119 0.96864 1.03190 0.97028 1.25812 1.01363 1.05230 1.03592 1.84877 1.20957 1.49510 1.04102 1.21183 0.88346 0.85440 0.74850 1.90698 1.14030 1.87229 1.48273 1.21822 1.00089 0.91928 1.03751 1.21462 0.97030 0.92704 1.02948 1.21643 0.99065 0.94017 1.00010 1.19092 0.94057 0.91254 0.97305 1.21288 0.92974 0.91218 1.50345 0.92771 1.25043 0.94838 0.99214 0.95488 1.69978 1.06044 1.26482 1.50974 0.86614 0.79826 0.83628 0.78041 1.20717 1.21257 1.19927 0.92606 0.90362 0.91181 0.88814 0.88846 0.84614 0.84598 0.82100 0.89150 0.89235 0.91817 0.91801 0.93517 0.93524 0.96604 0.96594 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.29 59.85 0.62 1.18 16 2 N -0.62 -6.66 2.86 -182.95 -0.52 -7.19 16 3 C 0.19 1.81 5.94 -5.19 -0.03 1.78 16 4 C -0.20 -2.09 6.09 -36.00 -0.22 -2.30 16 5 C -0.13 -1.18 10.05 -41.21 -0.41 -1.59 16 6 C -0.14 -1.25 10.18 -41.21 -0.42 -1.67 16 7 C -0.22 -2.15 11.23 29.04 0.33 -1.83 16 8 S 0.14 1.66 23.33 -107.50 -2.51 -0.85 16 9 C 0.51 7.35 7.67 -10.98 -0.08 7.26 16 10 O -0.53 -9.49 15.56 5.56 0.09 -9.41 16 11 C -0.14 -1.87 4.25 -27.88 -0.12 -1.99 16 12 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16 25 H 0.07 0.34 7.89 -51.93 -0.41 -0.07 16 26 H 0.09 1.06 7.42 -51.93 -0.39 0.68 16 27 H 0.09 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 29 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 32 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -34.18 343.08 -9.32 -43.50 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.11 Total: -4.12 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -1.15 Total: -17.12 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.21 Total: -34.20 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.51 Total: -0.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.18 -9.32 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588254355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.971 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds