Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86799 * 119.99666 * 2 1 4 4 H 1.48496 * 109.47143 * 269.99642 * 3 2 1 5 5 H 1.48500 * 109.47042 * 30.00386 * 3 2 1 6 6 H 1.48504 * 109.46861 * 149.99761 * 3 2 1 7 7 C 1.39875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00530 * 196.78124 * 7 2 1 9 9 C 1.41449 * 119.99955 * 16.78077 * 7 2 1 10 10 C 1.40894 * 120.15960 * 205.46005 * 9 7 2 11 11 C 1.37762 * 120.08524 * 180.02562 * 10 9 7 12 12 C 1.38293 * 120.42634 * 359.71770 * 11 10 9 13 13 C 1.40223 * 120.32289 * 0.55788 * 12 11 10 14 14 N 1.36475 * 120.05069 * 179.71275 * 13 12 11 15 15 C 1.32711 * 120.00441 * 273.46271 * 14 13 12 16 16 C 1.41210 * 120.50134 * 175.33444 * 15 14 13 17 17 C 1.36069 * 119.42664 * 180.02562 * 16 15 14 18 18 C 1.40520 * 120.04318 * 359.97438 * 17 16 15 19 19 N 1.30780 * 120.53979 * 359.97438 * 18 17 16 20 20 N 1.37071 * 120.49887 * 355.34558 * 15 14 13 21 21 H 0.97006 * 120.07888 * 359.97438 * 20 15 14 22 22 C 1.51474 * 109.29741 * 180.02562 * 18 17 16 23 23 C 1.54285 * 105.29298 * 342.61990 * 22 18 17 24 24 C 1.51351 * 130.48079 * 179.97438 * 17 16 15 25 25 C 1.39251 * 119.89850 * 359.44843 * 13 12 11 26 26 H 0.96994 * 120.00052 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.95548 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.78258 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.83852 * 180.30276 * 12 11 10 30 30 H 1.08003 * 120.28925 * 0.04439 * 16 15 14 31 31 H 1.08997 * 110.28488 * 101.57489 * 22 18 17 32 32 H 1.08996 * 110.28389 * 223.66654 * 22 18 17 33 33 H 1.08999 * 110.75815 * 268.49967 * 23 22 18 34 34 H 1.08994 * 110.91751 * 145.18786 * 23 22 18 35 35 H 1.09005 * 110.29021 * 316.28762 * 24 17 16 36 36 H 1.09009 * 110.28937 * 78.29779 * 24 17 16 37 37 H 1.08001 * 120.20742 * 180.25125 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5401 1.4402 0.7001 7 6 2.0080 -1.2113 0.0005 8 1 3.0535 -1.2312 0.2706 9 6 1.3460 -2.4104 -0.3526 10 6 1.8160 -3.6474 0.1311 11 6 1.1704 -4.8143 -0.2142 12 6 0.0552 -4.7823 -1.0313 13 6 -0.4242 -3.5615 -1.5273 14 7 -1.5218 -3.5369 -2.3381 15 6 -1.3834 -3.7018 -3.6476 16 6 -2.5183 -3.7764 -4.4845 17 6 -2.3510 -3.9463 -5.8241 18 6 -1.0577 -4.0456 -6.3647 19 7 -0.0065 -3.9756 -5.5899 20 7 -0.1366 -3.8026 -4.2081 21 1 0.6538 -3.7533 -3.6479 22 6 -1.1550 -4.2282 -7.8652 23 6 -2.6091 -4.6720 -8.1278 24 6 -3.3724 -4.0583 -6.9355 25 6 0.2180 -2.3737 -1.1869 26 1 -0.4850 0.8400 -0.0004 27 1 2.6841 -3.6809 0.7728 28 1 1.5346 -5.7598 0.1597 29 1 -0.4466 -5.7025 -1.2921 30 1 -3.5105 -3.6989 -4.0650 31 1 -0.9495 -3.2867 -8.3745 32 1 -0.4591 -4.9983 -8.1980 33 1 -2.6889 -5.7590 -8.1192 34 1 -2.9754 -4.2666 -9.0709 35 1 -4.1901 -4.7125 -6.6329 36 1 -3.7555 -3.0719 -7.1975 37 1 -0.1494 -1.4303 -1.5628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590735999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = 76.173818 kcal Electronic energy + Delta-G solvation = -20696.953522 eV Core-core repulsion = 17631.783945 eV Total energy + Delta-G solvation = -3065.169578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71581 -39.75860 -38.02163 -36.03331 -35.21520 -33.28332 -31.79215 -31.49108 -29.91106 -27.68927 -27.19262 -25.64097 -23.47658 -22.87512 -21.99144 -21.15401 -19.46068 -19.21629 -18.29998 -17.30734 -16.71973 -16.56183 -16.50844 -15.78099 -15.35652 -14.99923 -14.90594 -14.43522 -14.25986 -13.87847 -13.71834 -13.48102 -13.17633 -13.03770 -12.89407 -12.70219 -12.47277 -12.25622 -12.13541 -12.04225 -11.82293 -11.56151 -11.42786 -11.15571 -10.76571 -10.67288 -9.44705 -8.88805 -8.82549 -8.58101 -6.45125 -0.46429 0.71865 0.81299 0.99327 1.31317 1.34743 1.45844 1.46570 2.14801 2.25854 2.63127 3.09601 3.25219 3.59184 3.68697 3.84440 4.08969 4.29151 4.36805 4.45292 4.56790 4.62025 4.79346 4.84112 4.87854 4.95457 5.05229 5.06197 5.15852 5.19161 5.25047 5.30273 5.35981 5.43949 5.44862 5.78957 5.89462 6.01666 6.07703 6.26222 6.53858 6.77979 6.85700 6.92290 7.29312 8.27869 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.004423 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.386115 B = 6328.947170 C = 6991.386490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.092 3.908 10 C -0.252 4.252 11 C -0.075 4.075 12 C -0.264 4.264 13 C 0.113 3.887 14 N -0.586 5.586 15 C 0.382 3.618 16 C -0.109 4.109 17 C -0.071 4.071 18 C 0.083 3.917 19 N -0.253 5.253 20 N -0.543 5.543 21 H 0.432 0.568 22 C -0.054 4.054 23 C -0.106 4.106 24 C -0.080 4.080 25 C -0.202 4.202 26 H 0.286 0.714 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.167 0.833 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 -5.880 -19.655 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.529 4.529 8 H 0.099 0.901 9 C 0.089 3.911 10 C -0.271 4.271 11 C -0.094 4.094 12 C -0.286 4.286 13 C 0.014 3.986 14 N -0.314 5.314 15 C 0.117 3.883 16 C -0.137 4.137 17 C -0.080 4.080 18 C -0.099 4.099 19 N -0.065 5.065 20 N -0.272 5.272 21 H 0.275 0.725 22 C -0.093 4.093 23 C -0.144 4.144 24 C -0.117 4.117 25 C -0.224 4.224 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.143 0.857 29 H 0.115 0.885 30 H 0.185 0.815 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.377 -5.623 -18.974 20.792 hybrid contribution 0.673 0.820 1.313 1.688 sum -5.704 -4.803 -17.661 19.170 Atomic orbital electron populations 1.69962 1.09293 1.30415 1.35586 1.26879 0.95441 1.04915 0.91127 0.85156 0.79214 0.75567 0.79477 1.18860 1.19123 1.17538 1.19878 0.98151 0.92220 1.42677 0.90080 1.17870 0.91398 0.93409 0.88390 1.21225 1.05021 0.92841 1.08055 1.20726 0.94713 0.97449 0.96487 1.20778 1.02203 0.94921 1.10690 1.18524 0.89159 0.93463 0.97406 1.69596 1.27990 1.33261 1.00525 1.20798 0.86164 0.90959 0.90424 1.20647 0.97573 1.03420 0.92023 1.21787 0.97989 0.94067 0.94133 1.23965 0.89324 0.96787 0.99836 1.74581 1.28736 1.13970 0.89169 1.46907 1.07994 1.68794 1.03533 0.72481 1.21211 1.00333 1.04764 0.82970 1.22369 0.91142 1.02105 0.98775 1.21312 0.95790 1.04260 0.90307 1.21362 1.00543 0.95341 1.05183 0.90365 0.87811 0.85687 0.88494 0.81529 0.86964 0.88109 0.89519 0.86265 0.87675 0.86975 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.44 10.96 21.81 0.24 -47.20 16 2 C 0.03 1.67 5.15 85.23 0.44 2.11 16 3 Si 0.99 40.62 29.59 68.60 2.03 42.65 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 7 C -0.50 -28.70 9.05 23.46 0.21 -28.49 16 8 H 0.08 4.42 7.90 -2.91 -0.02 4.40 16 9 C 0.09 5.40 5.56 -21.32 -0.12 5.28 16 10 C -0.25 -13.27 9.79 22.81 0.22 -13.04 16 11 C -0.08 -3.61 10.00 22.17 0.22 -3.39 16 12 C -0.26 -13.23 10.00 22.77 0.23 -13.00 16 13 C 0.11 6.09 4.32 39.15 0.17 6.26 16 14 N -0.59 -28.89 10.38 -186.28 -1.93 -30.82 16 15 C 0.38 15.58 7.50 134.13 1.01 16.58 16 16 C -0.11 -3.29 10.01 22.50 0.23 -3.06 16 17 C -0.07 -1.57 6.11 -19.61 -0.12 -1.69 16 18 C 0.08 1.96 7.42 43.52 0.32 2.28 16 19 N -0.25 -8.27 11.92 -46.39 -0.55 -8.82 16 20 N -0.54 -21.59 6.64 -55.12 -0.37 -21.95 16 21 H 0.43 18.95 7.52 -213.47 -1.61 17.34 16 22 C -0.05 -0.62 6.76 30.53 0.21 -0.41 16 23 C -0.11 -0.60 7.05 31.47 0.22 -0.38 16 24 C -0.08 -0.79 6.76 30.49 0.21 -0.58 16 25 C -0.20 -11.91 8.63 23.03 0.20 -11.71 16 26 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 27 H 0.10 5.08 8.06 -2.91 -0.02 5.05 16 28 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.12 0.02 8.14 -2.39 -0.02 0.01 16 35 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.09 5.77 6.19 -2.91 -0.02 5.75 16 Total: -1.00 -76.30 315.91 2.55 -73.75 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.51 Total: 35.63 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 3.64 Total: -43.23 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -2.61 Total: -108.80 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -76.30 2.55 -73.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590735999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.922 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds