Wall clock time and date at job start Tue Mar 31 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47064 * 2 1 4 4 N 1.32610 * 120.41800 * 269.97265 * 3 2 1 5 5 C 1.31718 * 121.03329 * 180.02562 * 4 3 2 6 6 N 1.31811 * 121.87586 * 359.71682 * 5 4 3 7 7 C 1.32902 * 120.71288 * 0.57719 * 6 5 4 8 8 N 1.38675 * 120.54673 * 179.71396 * 7 6 5 9 9 C 1.48558 * 111.00045 * 239.59588 * 8 7 6 10 10 C 1.54381 * 104.59606 * 200.95415 * 9 8 7 11 11 C 1.54263 * 105.05693 * 23.85596 * 10 9 8 12 12 O 1.42901 * 110.32457 * 118.99837 * 11 10 9 13 13 C 1.50703 * 110.32261 * 241.10230 * 11 10 9 14 14 H 1.07999 * 119.99930 * 120.67806 * 13 11 10 15 15 C 1.37877 * 119.99834 * 300.40454 * 13 11 10 16 16 N 1.31517 * 119.99920 * 354.64777 * 15 13 11 17 17 Si 1.86799 * 120.00181 * 174.64851 * 15 13 11 18 18 H 1.48501 * 109.47328 * 94.97231 * 17 15 13 19 19 H 1.48498 * 109.47426 * 214.97461 * 17 15 13 20 20 H 1.48503 * 109.46987 * 334.97289 * 17 15 13 21 21 C 1.48556 * 111.00153 * 124.17356 * 8 7 6 22 22 C 1.38240 * 120.41552 * 89.99843 * 3 2 1 23 23 F 1.35099 * 120.85149 * 359.96158 * 22 3 2 24 24 H 1.08993 * 109.47231 * 300.00400 * 1 2 3 25 25 H 1.09006 * 109.46836 * 60.00312 * 1 2 3 26 26 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46681 * 239.99817 * 2 1 3 28 28 H 1.08995 * 109.46652 * 120.00144 * 2 1 3 29 29 H 1.07998 * 119.06192 * 180.02562 * 5 4 3 30 30 H 1.09003 * 110.41060 * 82.17870 * 9 8 7 31 31 H 1.09003 * 110.41270 * 319.73408 * 9 8 7 32 32 H 1.08998 * 110.32776 * 264.95732 * 10 9 8 33 33 H 1.09000 * 110.32167 * 142.74346 * 10 9 8 34 34 H 0.96696 * 113.99961 * 56.34210 * 12 11 10 35 35 H 0.97005 * 119.99764 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.41036 * 40.26934 * 21 8 7 37 37 H 1.08994 * 110.41566 * 277.81646 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2566 2.0536 -1.1436 5 6 2.6962 3.2952 -1.1577 6 7 2.9269 3.9646 -0.0459 7 6 2.7321 3.3980 1.1404 8 7 2.9816 4.1036 2.3079 9 6 4.0127 3.4217 3.1319 10 6 3.7973 3.9720 4.5582 11 6 2.3277 4.4401 4.5894 12 8 1.5960 3.7128 5.5781 13 6 2.2554 5.9193 4.8688 14 1 1.7844 6.5809 4.1568 15 6 2.7855 6.4271 6.0359 16 7 3.2593 5.6115 6.9523 17 14 2.8307 8.2735 6.3154 18 1 1.6360 8.6855 7.0953 19 1 4.0602 8.6303 7.0678 20 1 2.8317 8.9726 5.0052 21 6 1.7789 4.1334 3.1793 22 6 2.2656 2.0806 1.1921 23 9 2.0483 1.4686 2.3768 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8676 3.7802 -2.1073 30 1 5.0116 3.6722 2.7747 31 1 3.8611 2.3424 3.1140 32 1 4.4662 4.8120 4.7449 33 1 3.9599 3.1861 5.2957 34 1 1.9718 3.7706 6.4672 35 1 3.6319 5.9687 7.7736 36 1 1.2778 3.1654 3.1688 37 1 1.0959 4.9197 2.8580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:34 Heat of formation + Delta-G solvation = -29.579444 kcal Electronic energy + Delta-G solvation = -22837.287828 eV Core-core repulsion = 19336.763220 eV Total energy + Delta-G solvation = -3500.524608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.12922 -41.05866 -38.61540 -35.62142 -34.65077 -32.35183 -32.13578 -30.69998 -28.80786 -28.13927 -25.11940 -24.82780 -23.87152 -21.94167 -20.78919 -19.68864 -18.54023 -17.44902 -17.11533 -16.98242 -16.07432 -15.34003 -14.85851 -14.66746 -14.41446 -14.14138 -14.01541 -13.88057 -13.50864 -13.26372 -12.68909 -12.48914 -12.18771 -11.94299 -11.83852 -11.64690 -11.25075 -11.20171 -11.12672 -10.73780 -10.61578 -10.40448 -10.33459 -10.01566 -9.51000 -9.23773 -9.10327 -8.57609 -8.20705 -8.16242 -6.20158 -4.24357 0.65678 0.82638 3.25805 3.33363 3.39435 3.49227 3.52220 3.75012 3.85464 4.34967 4.38216 4.52183 4.88759 5.04520 5.08361 5.16857 5.23425 5.50448 5.50580 5.64788 5.67899 5.78701 5.87333 5.95790 5.99910 6.10347 6.13284 6.38334 6.66717 6.76358 6.82853 6.97613 7.33730 7.43803 7.49804 7.81327 8.05327 8.16479 8.77578 9.37237 9.49176 10.88288 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029071 B = 0.005066 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.917282 B = 5526.198958 C = 5975.622638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C 0.153 3.847 4 N -0.509 5.509 5 C 0.295 3.705 6 N -0.484 5.484 7 C 0.347 3.653 8 N -0.462 5.462 9 C 0.037 3.963 10 C -0.119 4.119 11 C 0.257 3.743 12 O -0.591 6.591 13 C -0.520 4.520 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.052 3.948 22 C -0.036 4.036 23 F -0.109 7.109 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.206 0.794 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.384 0.616 35 H 0.266 0.734 36 H 0.051 0.949 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -9.695 -11.666 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C 0.007 3.993 4 N -0.224 5.224 5 C 0.006 3.994 6 N -0.198 5.198 7 C 0.105 3.895 8 N -0.185 5.185 9 C -0.089 4.089 10 C -0.157 4.157 11 C 0.216 3.784 12 O -0.400 6.400 13 C -0.559 4.559 14 H 0.081 0.919 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.074 4.074 22 C -0.064 4.064 23 F -0.088 7.088 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.222 0.778 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.235 0.765 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.862 -8.844 -12.982 15.732 hybrid contribution 0.150 0.004 1.769 1.775 sum -0.712 -8.841 -11.213 14.297 Atomic orbital electron populations 1.21696 0.93254 1.02646 1.02655 1.20536 0.97250 0.89303 1.04415 1.21852 0.93041 0.97586 0.86863 1.68259 1.14430 1.11231 1.28440 1.25001 0.90809 0.86788 0.96766 1.68237 1.16546 1.37790 0.97239 1.20844 0.89516 0.85928 0.93190 1.62314 1.09572 1.45437 1.01133 1.23365 0.94298 0.95869 0.95340 1.22906 1.01547 1.00262 0.91029 1.19152 0.85692 0.90512 0.83006 1.86098 1.57419 1.74581 1.21887 1.21608 1.37696 0.92013 1.04545 0.91855 1.24976 0.94266 0.98539 0.95532 1.69679 1.41401 1.34785 1.08019 0.86446 0.77494 0.84951 0.78376 1.20683 1.21093 1.19596 1.23287 0.89984 1.00743 0.93377 1.20367 1.07576 0.95140 0.83351 1.91523 1.92169 1.82216 1.42875 0.92282 0.92035 0.91308 0.88965 0.89485 0.77803 0.90619 0.93802 0.90035 0.92188 0.76540 0.92384 0.93060 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.08 -0.82 6.11 -27.88 -0.17 -0.99 16 3 C 0.15 2.14 6.07 -82.26 -0.50 1.64 16 4 N -0.51 -6.93 10.37 -10.84 -0.11 -7.05 16 5 C 0.30 3.97 12.28 -92.21 -1.13 2.83 16 6 N -0.48 -8.24 10.47 -13.74 -0.14 -8.38 16 7 C 0.35 6.38 5.95 -154.64 -0.92 5.46 16 8 N -0.46 -9.62 5.46 -168.51 -0.92 -10.54 16 9 C 0.04 0.74 6.23 -2.18 -0.01 0.73 16 10 C -0.12 -2.71 5.55 -25.35 -0.14 -2.85 16 11 C 0.26 6.35 1.05 -90.38 -0.09 6.26 16 12 O -0.59 -15.17 12.94 -35.23 -0.46 -15.62 16 13 C -0.52 -14.02 8.12 -34.44 -0.28 -14.30 16 14 H 0.06 1.74 7.53 -52.49 -0.40 1.34 16 15 C 0.07 1.81 4.95 -17.82 -0.09 1.72 16 16 N -0.90 -23.75 10.93 55.43 0.61 -23.14 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.05 1.16 5.49 -2.18 -0.01 1.15 16 22 C -0.04 -0.60 6.34 -38.98 -0.25 -0.85 16 23 F -0.11 -1.89 12.63 2.25 0.03 -1.86 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.88 7.71 -51.93 -0.40 0.48 16 29 H 0.21 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.04 0.83 5.96 -51.93 -0.31 0.52 16 32 H 0.08 2.01 7.23 -51.93 -0.38 1.64 16 33 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 34 H 0.38 9.86 7.36 45.56 0.34 10.19 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.05 1.12 5.51 -51.93 -0.29 0.83 16 37 H 0.08 1.92 7.66 -51.93 -0.40 1.52 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -28.77 305.73 -8.56 -37.33 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.91 Total: 9.04 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.23 Total: -0.22 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.57 Total: -49.11 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.46 Total: -15.62 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.77 -8.56 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.749 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds