Wall clock time and date at job start Tue Mar 31 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47240 * 2 1 4 4 C 1.36933 * 119.99939 * 265.78713 * 3 2 1 5 5 H 1.07998 * 120.00145 * 146.21221 * 4 3 2 6 6 C 1.38818 * 120.00149 * 326.21660 * 4 3 2 7 7 N 1.31614 * 119.99873 * 337.68187 * 6 4 3 8 8 Si 1.86801 * 119.99960 * 157.68363 * 6 4 3 9 9 H 1.48497 * 109.47460 * 89.99875 * 8 6 4 10 10 H 1.48501 * 109.46659 * 209.99851 * 8 6 4 11 11 H 1.48497 * 109.46997 * 329.99572 * 8 6 4 12 12 C 1.46497 * 119.99995 * 85.78773 * 3 2 1 13 13 C 1.53000 * 109.47264 * 90.00307 * 12 3 2 14 14 S 1.81404 * 109.46835 * 180.02562 * 13 12 3 15 15 C 1.76204 * 102.99880 * 179.97438 * 14 13 12 16 16 C 1.39040 * 120.04896 * 359.72477 * 15 14 13 17 17 C 1.38094 * 120.02442 * 179.69766 * 16 15 14 18 18 C 1.38232 * 120.13688 * 0.59903 * 17 16 15 19 19 C 1.38782 * 120.10289 * 359.68083 * 18 17 16 20 20 O 1.35896 * 120.01551 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00028 * 0.02562 * 20 19 18 22 22 C 1.38594 * 119.97118 * 0.02562 * 19 18 17 23 23 H 1.09001 * 109.47397 * 299.99949 * 1 2 3 24 24 H 1.08998 * 109.47238 * 60.00221 * 1 2 3 25 25 H 1.09008 * 109.46964 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47397 * 240.00051 * 2 1 3 27 27 H 1.08998 * 109.47238 * 119.99779 * 2 1 3 28 28 H 0.96998 * 120.00243 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47141 * 330.00022 * 12 3 2 30 30 H 1.09003 * 109.47037 * 210.00195 * 12 3 2 31 31 H 1.09000 * 109.47274 * 59.99797 * 13 12 3 32 32 H 1.08994 * 109.46934 * 299.99761 * 13 12 3 33 33 H 1.08001 * 119.98593 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.92929 * 180.30119 * 17 16 15 35 35 H 1.07998 * 119.94315 * 179.69901 * 18 17 16 36 36 H 1.08997 * 109.47392 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.47424 * 300.00650 * 21 20 19 38 38 H 1.08999 * 109.46760 * 60.00621 * 21 20 19 39 39 H 1.07995 * 120.07059 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3287 1.9977 -1.1827 5 1 2.1595 3.0579 -1.2997 6 6 2.8607 1.2598 -2.2313 7 7 3.4696 0.1182 -1.9902 8 14 2.7123 1.8873 -3.9845 9 1 3.8896 2.7321 -4.3093 10 1 2.6569 0.7350 -4.9196 11 1 1.4725 2.6935 -4.1184 12 6 2.1746 2.1029 1.2653 13 6 3.5854 1.8746 1.8117 14 16 3.7786 2.7677 3.3788 15 6 5.4350 2.3917 3.8477 16 6 6.2172 1.5712 3.0427 17 6 7.5173 1.2819 3.4074 18 6 8.0404 1.7966 4.5788 19 6 7.2626 2.6115 5.3894 20 8 7.7787 3.1170 6.5404 21 6 9.1288 2.7690 6.8538 22 6 5.9592 2.9096 5.0245 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8417 -0.3972 -2.7229 29 1 1.4425 1.7369 1.9851 30 1 2.0180 3.1685 1.0975 31 1 4.3175 2.2406 1.0918 32 1 3.7420 0.8091 1.9794 33 1 5.8093 1.1635 2.1295 34 1 8.1252 0.6483 2.7784 35 1 9.0560 1.5645 4.8635 36 1 9.4153 3.2366 7.7958 37 1 9.2129 1.6861 6.9458 38 1 9.7878 3.1184 6.0591 39 1 5.3527 3.5439 5.6539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595302146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:10 Heat of formation + Delta-G solvation = 1.668982 kcal Electronic energy + Delta-G solvation = -19153.394465 eV Core-core repulsion = 16188.145315 eV Total energy + Delta-G solvation = -2965.249150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01336 -37.30679 -36.23904 -32.04891 -31.08926 -30.86266 -30.08289 -28.08281 -27.36518 -24.33719 -23.09059 -22.20391 -22.01072 -19.97546 -18.46859 -16.75203 -16.30593 -15.93344 -15.83990 -15.73612 -15.01019 -14.43962 -14.20058 -13.87971 -13.61496 -13.31612 -13.08115 -12.80782 -12.45800 -12.36177 -12.11470 -11.53735 -11.38550 -11.27872 -11.23816 -11.02992 -10.82136 -10.76740 -10.49611 -10.03107 -9.97415 -9.77258 -9.62867 -9.50082 -8.58124 -8.28013 -7.10084 -6.76078 -5.90475 -3.42546 1.28007 1.49590 1.86714 2.90347 3.24182 3.31007 3.38832 3.42763 3.76267 4.41377 4.76275 4.96269 4.97688 5.00536 5.22074 5.25840 5.36708 5.43057 5.47836 5.58051 5.69621 5.89085 5.93595 6.24642 6.26776 6.30153 6.41563 6.49629 6.50944 6.58844 6.59863 6.65014 6.79656 6.86269 7.20882 7.35060 7.66979 7.73317 8.39061 9.07292 9.69489 10.25285 11.09899 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.003656 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.308044 B = 7657.355518 C = 8217.688144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 N -0.573 5.573 4 C -0.260 4.260 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.162 3.838 13 C -0.107 4.107 14 S -0.144 6.144 15 C -0.033 4.033 16 C -0.166 4.166 17 C -0.061 4.061 18 C -0.223 4.223 19 C 0.138 3.862 20 O -0.319 6.319 21 C 0.029 3.971 22 C -0.141 4.141 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.021 0.979 28 H 0.256 0.744 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 1.823 13.240 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.293 5.293 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.528 5.528 8 Si 0.729 3.271 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.033 3.967 13 C -0.258 4.258 14 S 0.101 5.899 15 C -0.146 4.146 16 C -0.190 4.190 17 C -0.081 4.081 18 C -0.244 4.244 19 C 0.091 3.909 20 O -0.232 6.232 21 C -0.067 4.067 22 C -0.166 4.166 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.637 2.499 13.731 15.454 hybrid contribution 1.436 -0.763 -1.600 2.282 sum 8.073 1.736 12.130 14.674 Atomic orbital electron populations 1.22287 1.00518 0.98875 1.00564 1.21021 0.90099 0.86013 1.01927 1.44109 1.72608 1.12158 1.00398 1.19156 1.36375 0.94281 0.89219 0.91671 1.25141 0.96697 0.97766 0.99402 1.69973 1.36013 1.15719 1.31103 0.86349 0.78277 0.78029 0.84476 1.21180 1.21412 1.20206 1.20763 0.89944 0.97321 0.88663 1.25041 1.06622 1.01563 0.92561 1.85400 1.08761 1.65562 1.30159 1.21642 0.98225 0.98403 0.96378 1.21313 0.95009 1.01429 1.01246 1.20846 0.94735 0.97339 0.95169 1.21149 1.00695 1.04538 0.98060 1.18791 0.92719 0.93597 0.85800 1.86050 1.29461 1.69752 1.37963 1.23023 0.81158 1.00902 1.01568 1.19896 0.93562 1.05508 0.97678 0.94730 0.93143 0.94534 0.88202 0.96054 0.93384 0.93572 0.92766 0.89237 0.90357 0.84941 0.85588 0.85681 0.88425 0.92717 0.92697 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.24 37.15 0.38 -2.85 16 2 C 0.14 3.10 5.97 -4.04 -0.02 3.07 16 3 N -0.57 -13.71 2.45 -173.24 -0.43 -14.14 16 4 C -0.26 -6.83 9.49 -15.06 -0.14 -6.97 16 5 H 0.07 1.71 7.92 -52.49 -0.42 1.30 16 6 C 0.01 0.28 4.93 -17.43 -0.09 0.19 16 7 N -0.89 -24.36 11.32 55.49 0.63 -23.74 16 8 Si 0.90 20.93 29.61 -169.99 -5.03 15.90 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.16 3.33 5.69 -4.04 -0.02 3.30 16 13 C -0.11 -2.07 4.66 37.16 0.17 -1.89 16 14 S -0.14 -2.45 21.92 -107.50 -2.36 -4.81 16 15 C -0.03 -0.54 6.11 -39.06 -0.24 -0.78 16 16 C -0.17 -2.68 9.36 -39.34 -0.37 -3.04 16 17 C -0.06 -0.84 10.03 -39.64 -0.40 -1.24 16 18 C -0.22 -2.83 9.04 -39.38 -0.36 -3.18 16 19 C 0.14 1.91 6.68 -39.25 -0.26 1.65 16 20 O -0.32 -3.95 10.49 -19.41 -0.20 -4.15 16 21 C 0.03 0.23 9.81 101.05 0.99 1.22 16 22 C -0.14 -2.15 9.73 -39.22 -0.38 -2.53 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.10 2.58 5.32 -51.93 -0.28 2.31 16 27 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 31 H 0.09 1.91 7.76 -51.92 -0.40 1.51 16 32 H 0.08 1.56 7.73 -51.93 -0.40 1.16 16 33 H 0.13 2.28 5.87 -52.49 -0.31 1.97 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 38 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -28.10 336.28 -8.92 -37.02 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.86 Total: 1.90 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.74 Total: -13.05 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.20 Total: -37.87 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.20 Total: -4.15 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.36 Total: -4.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.10 -8.92 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595302146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.686 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds