Wall clock time and date at job start Tue Mar 31 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00422 * 2 1 4 4 C 1.38835 * 120.01414 * 0.02562 * 3 2 1 5 5 C 1.38186 * 120.10637 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.13018 * 359.72452 * 5 4 3 7 7 C 1.38985 * 120.02982 * 0.55018 * 6 5 4 8 8 S 1.76206 * 120.05152 * 179.71842 * 7 6 5 9 9 C 1.81401 * 102.99841 * 359.73204 * 8 7 6 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 8 7 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99947 * 66.04655 * 11 10 9 13 13 C 1.46898 * 111.00516 * 189.99788 * 11 10 9 14 14 C 1.50701 * 109.47292 * 169.99828 * 13 11 10 15 15 H 1.07997 * 119.99853 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00056 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47045 * 60.00398 * 18 16 14 20 20 H 1.48496 * 109.46967 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46889 * 299.99912 * 18 16 14 22 22 C 1.38543 * 120.01815 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47006 * 299.99826 * 1 2 3 25 25 H 1.09000 * 109.46526 * 59.99549 * 1 2 3 26 26 H 1.08004 * 119.94801 * 359.95296 * 4 3 2 27 27 H 1.08002 * 119.93668 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.98165 * 180.27761 * 6 5 4 29 29 H 1.09002 * 109.47085 * 299.99758 * 9 8 7 30 30 H 1.09001 * 109.47417 * 59.99884 * 9 8 7 31 31 H 1.09002 * 109.47153 * 299.99990 * 10 9 8 32 32 H 1.08998 * 109.47533 * 59.99620 * 10 9 8 33 33 H 1.08997 * 109.47044 * 59.99771 * 12 11 10 34 34 H 1.09001 * 109.47499 * 180.02562 * 12 11 10 35 35 H 1.09003 * 109.47124 * 299.99969 * 12 11 10 36 36 H 1.08997 * 109.47144 * 290.00465 * 13 11 10 37 37 H 1.09002 * 109.46776 * 50.00434 * 13 11 10 38 38 H 0.97008 * 119.99705 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.06680 * 0.05327 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2903 2.3754 0.0005 5 6 1.9158 3.6076 0.0011 6 6 3.2950 3.6851 0.0068 7 6 4.0570 2.5228 0.0005 8 16 5.8163 2.6212 0.0004 9 6 6.1251 4.4087 0.0012 10 6 7.6333 4.6657 0.0018 11 7 7.8835 6.1132 0.0018 12 6 7.4239 6.7268 1.2550 13 6 9.3040 6.4021 -0.2357 14 6 9.4834 7.8795 -0.4730 15 1 8.6277 8.5380 -0.4493 16 6 10.7399 8.3904 -0.7204 17 7 11.7818 7.5884 -0.7498 18 14 10.9623 10.2218 -1.0139 19 1 10.4976 10.9742 0.1790 20 1 12.3982 10.5135 -1.2553 21 1 10.1680 10.6331 -2.1992 22 6 3.4296 1.2836 0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 0.2118 2.3182 0.0002 27 1 1.3252 4.5118 0.0019 28 1 3.7813 4.6495 0.0118 29 1 5.6805 4.8546 -0.8885 30 1 5.6807 4.8538 0.8914 31 1 8.0775 4.2199 0.8917 32 1 8.0782 4.2206 -0.8882 33 1 7.9561 6.2801 2.0948 34 1 7.6207 7.7986 1.2284 35 1 6.3535 6.5571 1.3715 36 1 9.8866 6.1005 0.6347 37 1 9.6457 5.8495 -1.1109 38 1 12.6658 7.9478 -0.9242 39 1 4.0191 0.3787 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595345704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:50 Heat of formation + Delta-G solvation = -9.823113 kcal Electronic energy + Delta-G solvation = -18611.802688 eV Core-core repulsion = 15646.055204 eV Total energy + Delta-G solvation = -2965.747484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25222 -37.56658 -36.91371 -32.80751 -31.36149 -30.94256 -30.04994 -27.58857 -27.08189 -25.49292 -23.27047 -22.41366 -22.01954 -20.17555 -18.71478 -16.62004 -16.41798 -16.24918 -16.04238 -16.03187 -15.19592 -15.07522 -14.50303 -14.13657 -13.83369 -13.46911 -13.40996 -13.19457 -12.97783 -12.42463 -11.97144 -11.85971 -11.66766 -11.55637 -11.35580 -11.21642 -10.93844 -10.82610 -10.64925 -10.51444 -10.11844 -9.89212 -9.79993 -9.26975 -8.53683 -8.46162 -7.46744 -7.34803 -6.05093 -4.06975 0.99512 1.22073 1.43749 2.44013 3.03301 3.32159 3.36373 3.39056 3.48424 4.40410 4.53260 4.76423 4.78001 4.80599 4.95118 4.99692 5.06716 5.11177 5.17422 5.25012 5.30937 5.34440 5.66489 5.71810 6.00173 6.00881 6.05758 6.10376 6.20852 6.22878 6.30290 6.37412 6.67802 7.11947 7.21662 7.28073 7.74141 8.01165 8.11789 8.47429 8.99735 9.57117 11.05743 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.002636 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.525263 B =10619.258930 C =11001.652907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.142 3.858 4 C -0.219 4.219 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.039 4.039 8 S -0.107 6.107 9 C -0.099 4.099 10 C 0.070 3.930 11 N -0.537 5.537 12 C 0.033 3.967 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.138 4.138 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.014 0.986 34 H 0.077 0.923 35 H 0.044 0.956 36 H -0.007 1.007 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.812 -12.395 2.665 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.095 3.905 4 C -0.241 4.241 5 C -0.080 4.080 6 C -0.194 4.194 7 C -0.153 4.153 8 S 0.138 5.862 9 C -0.248 4.248 10 C -0.060 4.060 11 N -0.262 5.262 12 C -0.116 4.116 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.163 4.163 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.011 0.989 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.816 -13.203 2.248 24.753 hybrid contribution -0.570 1.763 0.491 1.917 sum -21.386 -11.440 2.739 24.408 Atomic orbital electron populations 1.23059 0.78330 1.03925 1.01410 1.86069 1.21408 1.26887 1.88700 1.18793 0.91767 0.84175 0.95749 1.21206 0.99928 0.92326 1.10618 1.20841 0.94025 0.97098 0.96003 1.21202 0.94351 0.97468 1.06364 1.21577 0.97536 0.95389 1.00768 1.85536 0.98162 1.11309 1.91165 1.23832 1.02473 0.92318 1.06129 1.21704 0.90929 0.91854 1.01475 1.62143 1.23837 1.06793 1.33441 1.22292 0.97700 1.01470 0.90094 1.19757 0.80148 0.97307 0.95943 1.21096 0.93094 0.92381 1.48232 0.91857 1.25000 0.95879 0.98243 0.95524 1.69953 0.99116 1.34987 1.49663 0.86531 0.76919 0.85001 0.78783 1.20277 1.21333 1.20138 1.19882 0.91335 0.96971 1.08080 0.88229 0.92608 0.92591 0.85443 0.85428 0.85251 0.88486 0.89404 0.94821 0.90301 0.96786 0.90423 0.93700 0.98906 0.95034 0.92800 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.27 10.49 -19.41 -0.20 -3.47 16 3 C 0.14 1.61 6.68 -39.25 -0.26 1.35 16 4 C -0.22 -2.15 9.04 -39.38 -0.36 -2.51 16 5 C -0.06 -0.61 10.03 -39.64 -0.40 -1.00 16 6 C -0.17 -2.02 9.36 -39.34 -0.37 -2.39 16 7 C -0.04 -0.51 6.11 -39.06 -0.24 -0.75 16 8 S -0.11 -1.48 21.92 -107.50 -2.36 -3.84 16 9 C -0.10 -1.44 4.26 37.16 0.16 -1.28 16 10 C 0.07 1.25 4.96 -3.83 -0.02 1.23 16 11 N -0.54 -11.39 4.75 -244.38 -1.16 -12.55 16 12 C 0.03 0.63 9.14 60.07 0.55 1.18 16 13 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 14 C -0.51 -14.19 8.46 -34.44 -0.29 -14.49 16 15 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.14 -1.72 9.73 -39.22 -0.38 -2.10 16 23 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 25 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 26 H 0.13 0.91 6.29 -52.48 -0.33 0.58 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.48 5.87 -52.49 -0.31 1.17 16 29 H 0.10 1.41 7.76 -51.92 -0.40 1.00 16 30 H 0.09 1.21 6.15 -51.92 -0.32 0.89 16 31 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.08 1.44 7.93 -51.93 -0.41 1.02 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 35 H 0.04 0.71 6.47 -51.93 -0.34 0.37 16 36 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 37 H 0.03 0.87 7.93 -51.93 -0.41 0.46 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -30.58 333.63 -9.43 -40.00 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.71 Total: -2.64 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.74 Total: -13.15 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.43 Total: -38.42 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.20 Total: -3.47 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.36 Total: -3.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.58 -9.43 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595345704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.181 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds