Wall clock time and date at job start Tue Mar 31 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00422 * 2 1 4 4 C 1.38835 * 120.01414 * 0.02562 * 3 2 1 5 5 C 1.38186 * 120.10637 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.13018 * 359.72452 * 5 4 3 7 7 C 1.38985 * 120.02982 * 0.55018 * 6 5 4 8 8 S 1.76206 * 120.05152 * 179.71842 * 7 6 5 9 9 C 1.81401 * 102.99841 * 359.73204 * 8 7 6 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 8 7 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99947 * 66.04655 * 11 10 9 13 13 C 1.46898 * 111.00516 * 189.99788 * 11 10 9 14 14 C 1.50701 * 109.47292 * 169.99828 * 13 11 10 15 15 H 1.07997 * 119.99853 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00056 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47045 * 60.00398 * 18 16 14 20 20 H 1.48496 * 109.46967 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46889 * 299.99912 * 18 16 14 22 22 C 1.38543 * 120.01815 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47006 * 299.99826 * 1 2 3 25 25 H 1.09000 * 109.46526 * 59.99549 * 1 2 3 26 26 H 1.08004 * 119.94801 * 359.95296 * 4 3 2 27 27 H 1.08002 * 119.93668 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.98165 * 180.27761 * 6 5 4 29 29 H 1.09002 * 109.47085 * 299.99758 * 9 8 7 30 30 H 1.09001 * 109.47417 * 59.99884 * 9 8 7 31 31 H 1.09002 * 109.47153 * 299.99990 * 10 9 8 32 32 H 1.08998 * 109.47533 * 59.99620 * 10 9 8 33 33 H 1.08997 * 109.47044 * 59.99771 * 12 11 10 34 34 H 1.09001 * 109.47499 * 180.02562 * 12 11 10 35 35 H 1.09003 * 109.47124 * 299.99969 * 12 11 10 36 36 H 1.08997 * 109.47144 * 290.00465 * 13 11 10 37 37 H 1.09002 * 109.46776 * 50.00434 * 13 11 10 38 38 H 0.97008 * 119.99705 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.06680 * 0.05327 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2903 2.3754 0.0005 5 6 1.9158 3.6076 0.0011 6 6 3.2950 3.6851 0.0068 7 6 4.0570 2.5228 0.0005 8 16 5.8163 2.6212 0.0004 9 6 6.1251 4.4087 0.0012 10 6 7.6333 4.6657 0.0018 11 7 7.8835 6.1132 0.0018 12 6 7.4239 6.7268 1.2550 13 6 9.3040 6.4021 -0.2357 14 6 9.4834 7.8795 -0.4730 15 1 8.6277 8.5380 -0.4493 16 6 10.7399 8.3904 -0.7204 17 7 11.7818 7.5884 -0.7498 18 14 10.9623 10.2218 -1.0139 19 1 10.4976 10.9742 0.1790 20 1 12.3982 10.5135 -1.2553 21 1 10.1680 10.6331 -2.1992 22 6 3.4296 1.2836 0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 0.2118 2.3182 0.0002 27 1 1.3252 4.5118 0.0019 28 1 3.7813 4.6495 0.0118 29 1 5.6805 4.8546 -0.8885 30 1 5.6807 4.8538 0.8914 31 1 8.0775 4.2199 0.8917 32 1 8.0782 4.2206 -0.8882 33 1 7.9561 6.2801 2.0948 34 1 7.6207 7.7986 1.2284 35 1 6.3535 6.5571 1.3715 36 1 9.8866 6.1005 0.6347 37 1 9.6457 5.8495 -1.1109 38 1 12.6658 7.9478 -0.9242 39 1 4.0191 0.3787 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595345704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:49 Heat of formation + Delta-G solvation = -28.250387 kcal Electronic energy + Delta-G solvation = -18612.601755 eV Core-core repulsion = 15646.055204 eV Total energy + Delta-G solvation = -2966.546551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01484 -38.60947 -38.32538 -34.86959 -32.34558 -32.14279 -31.07081 -28.98526 -28.13881 -27.16366 -24.55261 -23.49482 -23.16679 -21.79652 -19.51713 -18.50891 -17.58758 -17.14279 -16.98192 -16.74523 -16.66150 -16.48496 -16.22753 -15.12339 -14.94783 -14.86399 -14.71786 -14.30648 -13.91624 -13.87540 -13.27884 -13.22009 -13.02629 -12.75244 -12.63985 -12.47704 -12.39090 -12.28689 -12.12759 -12.00957 -11.79224 -11.31470 -11.18520 -10.68656 -10.61656 -9.36278 -9.13092 -8.48396 -8.20864 -6.31428 0.14007 0.36309 0.37880 1.36905 1.42299 1.45650 1.53525 2.37924 2.40843 2.64672 3.11768 3.34244 3.77196 3.80760 3.91731 4.07311 4.13361 4.23649 4.40134 4.42097 4.45919 4.48898 4.52325 4.62790 4.74152 4.75210 4.82045 4.85506 5.05658 5.15825 5.16817 5.26948 5.27679 5.39676 5.60969 5.62967 6.01080 6.24139 6.40246 6.53216 6.83772 7.38148 8.90237 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.002636 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.525263 B =10619.258930 C =11001.652907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.136 3.864 4 C -0.212 4.212 5 C -0.058 4.058 6 C -0.182 4.182 7 C -0.052 4.052 8 S -0.125 6.125 9 C -0.083 4.083 10 C 0.073 3.927 11 N -0.543 5.543 12 C 0.035 3.965 13 C 0.207 3.793 14 C -0.525 4.525 15 H 0.067 0.933 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.268 1.268 22 C -0.157 4.157 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.012 0.988 34 H 0.062 0.938 35 H 0.083 0.917 36 H -0.036 1.036 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.706 -11.491 2.849 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.089 3.911 4 C -0.233 4.233 5 C -0.078 4.078 6 C -0.206 4.206 7 C -0.166 4.166 8 S 0.120 5.880 9 C -0.232 4.232 10 C -0.056 4.056 11 N -0.268 5.268 12 C -0.113 4.113 13 C 0.080 3.920 14 C -0.563 4.563 15 H 0.085 0.915 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.182 4.182 23 H 0.137 0.863 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.150 0.850 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.102 0.898 36 H -0.018 1.018 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.755 -12.314 2.440 26.868 hybrid contribution 0.180 1.339 0.446 1.422 sum -23.574 -10.975 2.886 26.164 Atomic orbital electron populations 1.23393 0.76032 1.05717 1.02548 1.86053 1.23817 1.26601 1.88502 1.18913 0.91515 0.85223 0.95449 1.21569 1.01443 0.91527 1.08790 1.21205 0.93463 0.98445 0.94656 1.21370 0.95342 0.97084 1.06779 1.21540 0.96378 0.96190 1.02444 1.85554 1.00192 1.10387 1.91886 1.23565 0.99595 0.93180 1.06815 1.21661 0.93485 0.89649 1.00848 1.62040 1.20542 1.09146 1.35033 1.22320 0.99923 1.00242 0.88829 1.19412 0.82706 0.96345 0.93503 1.21427 0.93444 0.93301 1.48113 0.91501 1.25963 0.95506 1.03351 0.95058 1.70091 0.99646 1.37267 1.50543 0.85389 0.76959 0.78852 0.79141 1.19059 1.20995 1.19256 1.19964 0.92356 0.96715 1.09125 0.86347 0.91356 0.91411 0.82420 0.82526 0.84956 0.88260 0.88141 0.95041 0.91431 0.96966 0.91918 0.89848 1.01801 0.97766 0.92657 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.39 10.49 -92.35 -0.97 -7.36 16 3 C 0.14 2.87 6.68 22.49 0.15 3.02 16 4 C -0.21 -3.53 9.04 22.40 0.20 -3.32 16 5 C -0.06 -1.00 10.03 22.23 0.22 -0.78 16 6 C -0.18 -4.01 9.36 22.43 0.21 -3.80 16 7 C -0.05 -1.32 6.11 22.61 0.14 -1.19 16 8 S -0.12 -3.45 21.92 -56.49 -1.24 -4.69 16 9 C -0.08 -2.35 4.26 71.98 0.31 -2.05 16 10 C 0.07 2.63 4.96 86.30 0.43 3.06 16 11 N -0.54 -23.24 4.75 -927.07 -4.41 -27.64 16 12 C 0.04 1.30 9.14 127.69 1.17 2.47 16 13 C 0.21 11.10 4.72 85.56 0.40 11.51 16 14 C -0.52 -29.64 8.46 25.60 0.22 -29.42 16 15 H 0.07 3.65 7.12 -2.91 -0.02 3.63 16 16 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 17 N -0.94 -56.59 13.29 21.45 0.28 -56.30 16 18 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.16 -3.86 9.73 22.50 0.22 -3.64 16 23 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 25 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 26 H 0.16 1.59 6.29 -2.91 -0.02 1.57 16 27 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.13 2.76 5.87 -2.91 -0.02 2.74 16 29 H 0.10 2.78 7.76 -2.39 -0.02 2.76 16 30 H 0.10 2.57 6.15 -2.39 -0.01 2.56 16 31 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 32 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 2.51 6.76 -2.39 -0.02 2.49 16 35 H 0.08 2.44 6.47 -2.39 -0.02 2.43 16 36 H -0.04 -2.08 8.12 -2.39 -0.02 -2.10 16 37 H 0.00 0.25 7.93 -2.39 -0.02 0.23 16 38 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 39 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -66.98 333.63 1.97 -65.01 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.03 Total: 7.34 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 5.24 Total: -22.44 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -4.12 Total: -83.95 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.97 Total: -7.36 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.24 Total: -4.69 kcal Total: -66.98 1.97 -65.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595345704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.764 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds