Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36233 * 117.00167 * 2 1 4 4 C 1.38671 * 122.58332 * 359.97438 * 3 2 1 5 5 C 1.33427 * 114.88242 * 180.29169 * 4 3 2 6 6 S 1.75865 * 109.66022 * 359.59712 * 5 4 3 7 7 C 1.33624 * 122.59001 * 180.02562 * 3 2 1 8 8 C 1.50702 * 125.19597 * 359.94126 * 7 3 2 9 9 N 1.46897 * 109.46968 * 90.00014 * 8 7 3 10 10 C 1.46847 * 110.99995 * 66.05158 * 9 8 7 11 11 C 1.53043 * 109.52357 * 185.84072 * 10 9 8 12 12 C 1.53117 * 109.27466 * 300.81257 * 11 10 9 13 13 C 1.53121 * 109.15972 * 57.65859 * 12 11 10 14 14 H 1.09009 * 109.50086 * 62.28075 * 13 12 11 15 15 C 1.50696 * 109.50165 * 182.40019 * 13 12 11 16 16 H 1.08005 * 119.99661 * 120.00625 * 15 13 12 17 17 C 1.37877 * 120.00004 * 299.99557 * 15 13 12 18 18 N 1.31516 * 120.00182 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 119.99820 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46967 * 90.00513 * 19 17 15 21 21 H 1.48493 * 109.46983 * 210.00348 * 19 17 15 22 22 H 1.48502 * 109.47153 * 330.00617 * 19 17 15 23 23 C 1.46849 * 111.00269 * 190.25866 * 9 8 7 24 24 H 1.08994 * 109.47369 * 59.99338 * 1 2 3 25 25 H 1.09000 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46788 * 299.99688 * 1 2 3 27 27 H 1.08002 * 122.55543 * 0.02562 * 4 3 2 28 28 H 1.08004 * 125.16784 * 179.73193 * 5 4 3 29 29 H 1.09003 * 109.47477 * 210.00385 * 8 7 3 30 30 H 1.09004 * 109.47354 * 330.00319 * 8 7 3 31 31 H 1.09008 * 109.46059 * 305.85292 * 10 9 8 32 32 H 1.08999 * 109.46813 * 65.81931 * 10 9 8 33 33 H 1.08995 * 109.50511 * 60.75892 * 11 10 9 34 34 H 1.09002 * 109.50131 * 180.87856 * 11 10 9 35 35 H 1.08999 * 109.51768 * 177.55985 * 12 11 10 36 36 H 1.08998 * 109.52663 * 297.68602 * 12 11 10 37 37 H 0.96997 * 119.99894 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.45996 * 294.18041 * 23 9 8 39 39 H 1.08998 * 109.46272 * 54.14458 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 -0.0005 5 6 2.1051 3.5066 -0.0066 6 16 3.8035 3.0502 -0.0005 7 6 3.3774 1.3439 -0.0005 8 6 4.3618 0.2029 0.0001 9 7 4.6812 -0.1690 -1.3846 10 6 5.4015 0.9133 -2.0674 11 6 5.5887 0.5520 -3.5427 12 6 6.3776 -0.7561 -3.6466 13 6 5.6302 -1.8554 -2.8866 14 1 4.6556 -2.0180 -3.3471 15 6 6.4293 -3.1322 -2.9341 16 1 6.7663 -3.5927 -2.0171 17 6 6.7299 -3.7126 -4.1480 18 7 6.3198 -3.1518 -5.2647 19 14 7.7199 -5.2958 -4.2067 20 1 6.7973 -6.4585 -4.1605 21 1 8.5090 -5.3398 -5.4639 22 1 8.6402 -5.3476 -3.0424 23 6 5.4417 -1.4244 -1.4304 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2662 2.4500 -0.0006 28 1 1.7334 4.5207 -0.0121 29 1 5.2732 0.5095 0.5135 30 1 3.9254 -0.6532 0.5148 31 1 4.8278 1.8370 -1.9896 32 1 6.3768 1.0515 -1.6007 33 1 4.6136 0.4274 -4.0134 34 1 6.1371 1.3486 -4.0457 35 1 6.4759 -1.0399 -4.6944 36 1 7.3678 -0.6199 -3.2117 37 1 6.5316 -3.5599 -6.1187 38 1 6.4169 -1.2753 -0.9667 39 1 4.8973 -2.1987 -0.8900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -22.329058 kcal Electronic energy + Delta-G solvation = -20192.420483 eV Core-core repulsion = 17226.130700 eV Total energy + Delta-G solvation = -2966.289783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78787 -39.68684 -36.79489 -35.66505 -33.76858 -31.77968 -30.95726 -28.10777 -26.91595 -26.44637 -24.47212 -23.41522 -22.79214 -20.51321 -20.23065 -18.59705 -18.21092 -17.53923 -16.93598 -16.59273 -16.21416 -15.96804 -15.59525 -15.11639 -14.95137 -14.60777 -14.39988 -14.12401 -13.80563 -13.55486 -13.28795 -13.20827 -12.85376 -12.72833 -12.53491 -12.39636 -12.19213 -11.93306 -11.76863 -11.73949 -11.62367 -11.39392 -10.90104 -10.66547 -10.37868 -9.58899 -9.09332 -8.84599 -8.06679 -6.21315 0.05332 0.66754 1.00512 1.42209 1.42395 1.53029 1.78276 2.43987 2.78610 3.19876 3.22246 3.75613 4.05686 4.15175 4.23838 4.30057 4.40147 4.46171 4.49708 4.51243 4.60670 4.69304 4.76523 4.79146 4.87146 4.88880 4.96832 5.02021 5.08908 5.17693 5.37785 5.47601 5.51847 5.63944 5.96214 6.12778 6.20946 6.32545 6.46064 6.49701 6.90786 7.46423 8.98122 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.004366 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.109690 B = 6412.331803 C = 6938.784214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.107 3.893 4 C -0.199 4.199 5 C -0.175 4.175 6 S 0.128 5.872 7 C -0.252 4.252 8 C 0.142 3.858 9 N -0.541 5.541 10 C 0.064 3.936 11 C -0.108 4.108 12 C -0.102 4.102 13 C 0.055 3.945 14 H -0.007 1.007 15 C -0.536 4.536 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.083 3.917 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.169 0.831 28 H 0.203 0.797 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.017 0.983 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 14.519 11.627 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C 0.050 3.950 4 C -0.230 4.230 5 C -0.311 4.311 6 S 0.390 5.610 7 C -0.369 4.369 8 C 0.014 3.986 9 N -0.266 5.266 10 C -0.064 4.064 11 C -0.146 4.146 12 C -0.140 4.140 13 C 0.036 3.964 14 H 0.011 0.989 15 C -0.575 4.575 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.044 4.044 24 H 0.078 0.922 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.186 0.814 28 H 0.220 0.780 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.283 15.024 11.210 20.918 hybrid contribution -0.269 -1.702 0.006 1.723 sum -9.552 13.322 11.215 19.862 Atomic orbital electron populations 1.23259 0.76884 1.04947 1.02068 1.86207 1.22923 1.25791 1.89347 1.17987 0.91146 0.85912 0.99949 1.20424 1.02775 0.90609 1.09234 1.25842 0.95323 1.03849 1.06082 1.84106 1.07197 0.95995 1.73688 1.23426 0.95672 0.98609 1.19227 1.20160 0.94796 0.94366 0.89311 1.61937 1.46191 1.03569 1.14916 1.22111 0.95601 0.94187 0.94452 1.21569 0.99749 0.97715 0.95597 1.21450 0.96485 0.94043 1.02044 1.18564 0.94243 0.93110 0.90487 0.98865 1.21509 1.34600 1.08844 0.92540 0.93022 1.25730 0.96911 1.00462 0.95322 1.70045 1.47118 1.40594 0.97794 0.85591 0.78787 0.79909 0.77563 1.20156 1.20757 1.19273 1.21977 0.93808 0.89920 0.98692 0.92205 0.87524 0.91156 0.81381 0.78038 0.94200 0.90293 0.89854 0.95671 0.93548 0.91048 0.92215 0.95697 0.93048 0.96474 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.92 113.37 1.12 1.56 16 2 O -0.33 -9.71 10.16 -96.21 -0.98 -10.69 16 3 C 0.11 2.99 6.59 21.33 0.14 3.13 16 4 C -0.20 -4.06 9.16 21.28 0.19 -3.87 16 5 C -0.18 -3.10 11.22 66.73 0.75 -2.35 16 6 S 0.13 2.91 21.74 -56.49 -1.23 1.68 16 7 C -0.25 -7.51 5.26 24.64 0.13 -7.38 16 8 C 0.14 4.86 5.30 85.56 0.45 5.31 16 9 N -0.54 -21.80 4.65 -900.90 -4.19 -25.99 16 10 C 0.06 2.40 5.29 86.33 0.46 2.86 16 11 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 12 C -0.10 -5.14 5.02 30.67 0.15 -4.99 16 13 C 0.05 2.95 2.26 -11.49 -0.03 2.93 16 14 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 15 C -0.54 -30.89 8.56 25.60 0.22 -30.67 16 16 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.01 0.82 5.30 84.65 0.45 1.27 16 18 N -0.92 -54.65 11.35 21.45 0.24 -54.40 16 19 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.08 3.83 4.68 86.32 0.40 4.23 16 24 H 0.06 1.00 7.84 -2.39 -0.02 0.98 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 0.97 7.84 -2.39 -0.02 0.96 16 27 H 0.17 2.43 6.91 -2.91 -0.02 2.41 16 28 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.04 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.08 2.78 7.80 -2.38 -0.02 2.76 16 31 H 0.08 2.76 5.72 -2.38 -0.01 2.75 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.06 3.37 6.15 -2.39 -0.01 3.35 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.05 2.50 8.01 -2.39 -0.02 2.48 16 Total: -1.00 -67.50 322.95 1.54 -65.96 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.03 Total: 8.96 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 4.64 Total: -32.28 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -3.94 Total: -80.39 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.98 Total: -10.69 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.23 Total: 1.68 kcal Total: -67.50 1.54 -65.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.628 kcal (2) G-P(sol) polarization free energy of solvation -67.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds