Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00351 * 2 1 4 4 H 1.09000 * 109.47205 * 30.00401 * 3 2 1 5 5 C 1.50702 * 109.46948 * 150.00005 * 3 2 1 6 6 O 1.21283 * 120.00262 * 5.00336 * 5 3 2 7 7 N 1.34777 * 119.99928 * 184.72242 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.50694 * 109.47460 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00458 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47675 * 89.99681 * 14 12 10 16 16 H 1.48501 * 109.47162 * 209.99853 * 14 12 10 17 17 H 1.48503 * 109.47180 * 329.99546 * 14 12 10 18 18 C 1.50702 * 109.47459 * 270.00081 * 3 2 1 19 19 C 1.38246 * 119.96981 * 324.72767 * 18 3 2 20 20 C 1.38194 * 120.02227 * 179.76762 * 19 18 3 21 21 C 1.38460 * 119.97577 * 0.50525 * 20 19 18 22 22 F 1.35105 * 120.03088 * 179.77173 * 21 20 19 23 23 C 1.38461 * 119.94785 * 359.74467 * 21 20 19 24 24 C 1.38206 * 119.97217 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.46489 * 300.00058 * 1 2 3 26 26 H 1.08997 * 109.46943 * 59.99229 * 1 2 3 27 27 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 29 29 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 30 30 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 31 31 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 32 32 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 33 33 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 34 34 H 1.08002 * 119.99047 * 0.02562 * 19 18 3 35 35 H 1.07998 * 120.01488 * 180.25734 * 20 19 18 36 36 H 1.07998 * 120.01614 * 179.97438 * 23 21 20 37 37 H 1.08000 * 119.98070 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5139 5 6 3.3387 1.2636 0.7104 6 8 3.7897 0.2042 1.0914 7 7 4.0282 2.4030 0.9175 8 6 5.3224 2.3618 1.6027 9 6 5.8891 3.7791 1.7082 10 6 7.2207 3.7366 2.4125 11 1 7.6224 2.7931 2.7515 12 6 7.9257 4.9022 2.6252 13 7 7.4362 6.0512 2.2128 14 14 9.5765 4.8495 3.4976 15 1 10.6595 4.6697 2.4975 16 1 9.7884 6.1219 4.2334 17 1 9.5941 3.7149 4.4556 18 6 2.2147 1.7643 -1.4208 19 6 2.5651 0.8512 -2.3979 20 6 2.7481 1.2701 -3.7020 21 6 2.5905 2.6066 -4.0279 22 9 2.7737 3.0181 -5.3017 23 6 2.2446 3.5210 -3.0475 24 6 2.0575 3.0990 -1.7448 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.6676 3.2504 0.6129 29 1 5.1911 1.9480 2.6025 30 1 6.0127 1.7352 1.0380 31 1 6.0203 4.1932 0.7085 32 1 5.1987 4.4053 2.2732 33 1 7.9323 6.8712 2.3621 34 1 2.6918 -0.1905 -2.1427 35 1 3.0178 0.5560 -4.4660 36 1 2.1219 4.5638 -3.3004 37 1 1.7873 3.8120 -0.9800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599751672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -110.173239 kcal Electronic energy + Delta-G solvation = -21403.934303 eV Core-core repulsion = 17867.622134 eV Total energy + Delta-G solvation = -3536.312168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.04288 -40.29907 -38.60815 -37.40219 -34.86491 -32.96281 -31.93635 -31.31258 -29.63815 -27.77555 -26.02242 -24.46411 -23.22786 -22.15895 -21.01871 -20.19346 -17.91563 -17.36379 -17.04210 -16.75896 -16.37475 -15.82829 -15.72217 -14.99781 -14.81075 -14.64663 -14.54508 -14.18193 -13.77838 -13.64489 -13.38387 -13.10323 -12.77232 -12.37191 -12.31451 -11.92624 -11.60959 -11.23553 -11.14846 -11.04514 -10.65649 -10.35911 -10.19840 -9.80264 -9.51208 -9.29548 -9.26127 -8.70526 -8.57342 -8.38408 -6.11064 -4.13822 0.85884 1.05262 2.83833 3.05933 3.28889 3.34380 3.35211 3.39576 4.06658 4.12279 4.39971 4.41654 4.54783 4.70458 4.84922 4.99133 5.07559 5.17881 5.19687 5.24999 5.26312 5.48348 5.68760 5.75438 5.92439 6.03881 6.20008 6.28102 6.31687 6.66736 6.70083 6.80317 6.89780 7.48983 7.58750 7.86876 7.92633 8.25396 8.56277 8.91956 9.51184 11.00539 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.004111 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.695097 B = 6809.000538 C = 8015.639320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.115 3.885 4 H 0.095 0.905 5 C 0.511 3.489 6 O -0.525 6.525 7 N -0.716 5.716 8 C 0.123 3.877 9 C 0.013 3.987 10 C -0.522 4.522 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.155 4.155 21 C 0.103 3.897 22 F -0.140 7.140 23 C -0.151 4.151 24 C -0.078 4.078 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.396 0.604 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.228 -6.078 -10.090 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.053 3.947 4 H 0.113 0.887 5 C 0.295 3.705 6 O -0.401 6.401 7 N -0.368 5.368 8 C 0.001 3.999 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.126 4.126 19 C -0.076 4.076 20 C -0.174 4.174 21 C 0.083 3.917 22 F -0.119 7.119 23 C -0.170 4.170 24 C -0.096 4.096 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.230 0.770 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.726 -6.827 -9.845 19.769 hybrid contribution 0.579 0.903 -0.004 1.073 sum -15.146 -5.924 -9.849 19.013 Atomic orbital electron populations 1.22905 0.80658 1.03216 1.00169 1.88051 1.19650 1.24494 1.94633 1.20775 0.94923 0.86987 0.92011 0.88716 1.20010 0.85641 0.84852 0.80026 1.90705 1.69036 1.29732 1.50605 1.46224 1.22613 1.08506 1.59408 1.21767 0.80979 1.01671 0.95472 1.19324 0.96206 0.89044 0.97870 1.21042 1.03621 0.93613 1.37766 0.92224 1.24985 0.98181 0.95386 0.95659 1.69954 1.38617 0.98058 1.46666 0.86512 0.83796 0.77506 0.79752 1.20548 1.21166 1.19705 1.20153 1.02993 0.94123 0.95356 1.20902 0.94910 1.00680 0.91059 1.21170 1.03872 0.94355 0.98015 1.17794 1.01424 0.93292 0.79154 1.91505 1.92803 1.91019 1.36558 1.21106 1.03127 1.00084 0.92678 1.20895 0.97924 0.94832 0.95983 0.93679 0.93795 0.89102 0.77028 0.92357 0.92418 0.95897 0.95910 0.92844 0.84182 0.84555 0.84304 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.81 101.05 1.09 1.33 16 2 O -0.35 -4.62 9.04 -55.09 -0.50 -5.12 16 3 C 0.11 1.45 2.72 -29.03 -0.08 1.37 16 4 H 0.10 0.92 7.70 -51.93 -0.40 0.52 16 5 C 0.51 8.73 7.17 -10.98 -0.08 8.65 16 6 O -0.52 -11.18 16.51 -14.31 -0.24 -11.41 16 7 N -0.72 -12.26 5.51 -60.29 -0.33 -12.59 16 8 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 14 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.13 -1.46 4.90 -104.62 -0.51 -1.97 16 19 C -0.06 -0.68 9.35 -39.59 -0.37 -1.05 16 20 C -0.16 -1.71 10.03 -39.52 -0.40 -2.11 16 21 C 0.10 1.18 7.30 -39.42 -0.29 0.89 16 22 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 23 C -0.15 -1.58 10.03 -39.51 -0.40 -1.97 16 24 C -0.08 -0.79 9.50 -39.59 -0.38 -1.17 16 25 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.40 5.78 8.29 -40.82 -0.34 5.44 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 34 H 0.14 1.67 7.63 -52.49 -0.40 1.27 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -32.69 330.32 -7.22 -39.91 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.90 Total: 1.15 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.98 Total: -6.38 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.40 Total: -37.71 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.73 Total: -16.53 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.69 -7.22 -39.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599751672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.266 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds