Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99924 * 2 1 4 4 H 1.09004 * 109.47054 * 29.99797 * 3 2 1 5 5 C 1.50699 * 109.46972 * 269.99954 * 3 2 1 6 6 O 1.21280 * 120.00220 * 354.99817 * 5 3 2 7 7 N 1.34779 * 119.99746 * 174.99874 * 5 3 2 8 8 C 1.46497 * 119.99511 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47004 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00207 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99881 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00128 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99723 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47300 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47142 * 119.99971 * 14 12 10 17 17 H 1.48502 * 109.46800 * 239.99608 * 14 12 10 18 18 C 1.50703 * 109.47264 * 149.99831 * 3 2 1 19 19 C 1.38239 * 119.97050 * 39.72762 * 18 3 2 20 20 C 1.38203 * 120.01987 * 179.72770 * 19 18 3 21 21 C 1.38458 * 119.97439 * 0.52332 * 20 19 18 22 22 F 1.35103 * 120.02301 * 179.73180 * 21 20 19 23 23 C 1.38457 * 119.94887 * 359.74625 * 21 20 19 24 24 C 1.38193 * 119.97308 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47077 * 60.00255 * 1 2 3 26 26 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46882 * 299.99937 * 1 2 3 28 28 H 0.96997 * 120.00140 * 359.97438 * 7 5 3 29 29 H 1.09000 * 109.47450 * 299.99982 * 8 7 5 30 30 H 1.09007 * 109.47633 * 60.00098 * 8 7 5 31 31 H 1.09000 * 109.47210 * 300.00383 * 9 8 7 32 32 H 1.09002 * 109.46722 * 60.00220 * 9 8 7 33 33 H 0.96993 * 119.99994 * 180.02562 * 13 12 10 34 34 H 1.07997 * 119.99312 * 359.97438 * 19 18 3 35 35 H 1.08008 * 120.01288 * 180.29753 * 20 19 18 36 36 H 1.07998 * 120.01207 * 179.97438 * 23 21 20 37 37 H 1.08000 * 119.98840 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.8569 3.4587 -3.0498 9 6 3.3617 4.9031 -3.0517 10 6 3.5661 5.3619 -4.4725 11 1 3.3564 4.6907 -5.2922 12 6 4.0207 6.6387 -4.7260 13 7 4.2755 7.4563 -3.7279 14 14 4.2733 7.2077 -6.4872 15 1 3.9171 6.1075 -7.4188 16 1 3.4081 8.3843 -6.7562 17 1 5.6961 7.5835 -6.6867 18 6 3.3386 1.2640 0.7105 19 6 4.1867 0.1879 0.5267 20 6 5.4076 0.1515 1.1733 21 6 5.7765 1.1881 2.0138 22 9 6.9674 1.1508 2.6506 23 6 4.9237 2.2626 2.2014 24 6 3.7055 2.2992 1.5501 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8467 3.6155 -0.9324 29 1 3.5902 2.8165 -3.5375 30 1 1.9108 3.4042 -3.5885 31 1 2.6281 5.5450 -2.5641 32 1 4.3077 4.9580 -2.5129 33 1 4.5949 8.3546 -3.9062 34 1 3.8969 -0.6227 -0.1255 35 1 6.0722 -0.6871 1.0259 36 1 5.2102 3.0716 2.8571 37 1 3.0403 3.1374 1.6959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599751673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = -111.431554 kcal Electronic energy + Delta-G solvation = -21396.037345 eV Core-core repulsion = 17859.670612 eV Total energy + Delta-G solvation = -3536.366733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.02172 -40.28885 -38.63944 -37.30387 -34.85766 -32.97951 -32.02150 -31.31219 -29.65136 -27.51344 -26.15076 -24.44715 -23.20520 -22.16639 -21.02581 -20.19205 -17.88466 -17.41615 -17.05682 -16.70151 -16.38006 -15.80259 -15.69968 -14.98692 -14.76359 -14.60298 -14.53674 -14.21498 -13.73178 -13.57411 -13.39085 -13.11236 -12.79091 -12.37033 -12.33098 -11.78651 -11.48957 -11.23453 -11.12530 -11.06043 -10.66238 -10.59057 -10.37295 -9.75816 -9.43723 -9.27117 -9.20721 -8.66032 -8.57828 -8.39429 -6.11934 -4.14732 0.87850 1.07916 2.80398 3.25769 3.26801 3.32673 3.35164 3.40477 3.92980 4.09350 4.40009 4.47429 4.56787 4.72299 4.85005 4.99880 5.10297 5.20229 5.25419 5.27374 5.35640 5.59372 5.69879 5.78257 5.94159 6.05681 6.23404 6.27601 6.30337 6.67718 6.69339 6.81639 6.88623 7.48230 7.57947 7.86045 7.92247 8.24464 8.54616 8.91351 9.50386 10.99705 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.004221 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.861792 B = 6631.950616 C = 7973.059710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.116 3.884 4 H 0.094 0.906 5 C 0.487 3.513 6 O -0.531 6.531 7 N -0.716 5.716 8 C 0.122 3.878 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.098 4.098 19 C -0.055 4.055 20 C -0.155 4.155 21 C 0.103 3.897 22 F -0.140 7.140 23 C -0.151 4.151 24 C -0.077 4.077 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.396 0.604 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -11.903 14.577 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.054 3.946 4 H 0.112 0.888 5 C 0.271 3.729 6 O -0.408 6.408 7 N -0.367 5.367 8 C 0.000 4.000 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.099 4.099 19 C -0.073 4.073 20 C -0.174 4.174 21 C 0.084 3.916 22 F -0.119 7.119 23 C -0.170 4.170 24 C -0.095 4.095 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.230 0.770 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.159 -12.453 13.947 18.963 hybrid contribution 0.326 1.004 -0.484 1.161 sum -2.833 -11.449 13.463 17.899 Atomic orbital electron populations 1.22875 0.80286 1.03266 1.00233 1.87956 1.20274 1.24411 1.94553 1.20762 0.93367 0.87353 0.93093 0.88794 1.20961 0.78322 0.82607 0.91044 1.90692 1.50680 1.53842 1.45602 1.46327 1.65980 1.13462 1.10965 1.21754 1.00361 0.98557 0.79375 1.19329 0.96697 0.88204 0.98250 1.21081 1.44735 0.98304 0.91879 0.92200 1.24990 0.95195 0.96649 0.97396 1.69958 1.45386 1.07137 1.30792 0.86465 0.77834 0.78716 0.84613 1.19573 1.20918 1.20912 1.19452 0.95169 0.96298 0.98976 1.20907 0.91706 0.97689 0.96968 1.21174 0.98305 0.99170 0.98742 1.17786 0.82143 0.96457 0.95208 1.91504 1.43706 1.96592 1.80068 1.21075 0.94609 0.98436 1.02889 1.20847 0.96121 0.97854 0.94670 0.93340 0.89138 0.93896 0.77007 0.92477 0.92492 0.95943 0.95890 0.92882 0.84232 0.84501 0.84250 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.81 101.05 1.09 1.40 16 2 O -0.35 -4.69 9.20 -55.09 -0.51 -5.20 16 3 C 0.12 1.47 2.72 -29.03 -0.08 1.39 16 4 H 0.09 0.91 7.65 -51.93 -0.40 0.52 16 5 C 0.49 8.16 7.11 -10.98 -0.08 8.09 16 6 O -0.53 -10.98 16.51 -14.30 -0.24 -11.22 16 7 N -0.72 -12.22 5.51 -60.29 -0.33 -12.55 16 8 C 0.12 2.56 5.61 -4.04 -0.02 2.53 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 14 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.10 -1.17 4.92 -104.62 -0.52 -1.69 16 19 C -0.05 -0.67 9.35 -39.59 -0.37 -1.04 16 20 C -0.16 -1.75 10.03 -39.51 -0.40 -2.15 16 21 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 22 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 23 C -0.15 -1.58 10.03 -39.52 -0.40 -1.97 16 24 C -0.08 -0.78 9.67 -39.60 -0.38 -1.16 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.40 5.81 8.47 -40.82 -0.35 5.46 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.14 1.73 7.77 -52.49 -0.41 1.33 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -32.46 330.86 -7.24 -39.70 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.92 Total: 1.48 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.99 Total: -6.63 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.40 Total: -37.68 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.74 Total: -16.41 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.46 -7.24 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599751673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.736 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds