Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46997 * 2 1 4 4 C 1.42897 * 113.99890 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47021 * 180.02562 * 4 3 2 6 6 O 1.21291 * 120.00095 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00347 * 179.97438 * 5 4 3 8 8 C 1.37128 * 119.99713 * 0.02562 * 7 5 4 9 9 H 1.08003 * 119.99828 * 2.17711 * 8 7 5 10 10 C 1.38874 * 120.00233 * 181.91212 * 8 7 5 11 11 N 1.31430 * 119.99922 * 8.93103 * 10 8 7 12 12 Si 1.86804 * 120.00230 * 188.93958 * 10 8 7 13 13 H 1.48499 * 109.47223 * 95.05849 * 12 10 8 14 14 H 1.48495 * 109.47065 * 215.05895 * 12 10 8 15 15 H 1.48497 * 109.46974 * 335.05851 * 12 10 8 16 16 C 1.39836 * 120.00566 * 179.97438 * 7 5 4 17 17 C 1.38974 * 120.05116 * 268.67068 * 16 7 5 18 18 C 1.38041 * 119.94577 * 179.69601 * 17 16 7 19 19 C 1.38540 * 120.05474 * 0.57593 * 18 17 16 20 20 F 1.35094 * 119.95110 * 179.74502 * 19 18 17 21 21 C 1.38497 * 120.09946 * 359.71799 * 19 18 17 22 22 C 1.38084 * 120.05456 * 359.97438 * 21 19 18 23 23 C 1.50700 * 120.02555 * 179.97438 * 22 21 19 24 24 H 1.08999 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47068 * 299.99578 * 1 2 3 26 26 H 1.09000 * 109.46952 * 60.00133 * 1 2 3 27 27 H 1.08994 * 109.47068 * 240.00422 * 2 1 3 28 28 H 1.09000 * 109.46952 * 119.99867 * 2 1 3 29 29 H 1.08996 * 109.46941 * 60.00104 * 4 3 2 30 30 H 1.09005 * 109.47207 * 300.00243 * 4 3 2 31 31 H 0.97004 * 120.00325 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.02599 * 359.97210 * 17 16 7 33 33 H 1.08002 * 119.97363 * 180.27521 * 18 17 16 34 34 H 1.08006 * 119.97016 * 180.02562 * 21 19 18 35 35 H 1.09003 * 109.47053 * 270.01824 * 23 22 21 36 36 H 1.09001 * 109.47349 * 30.01966 * 23 22 21 37 37 H 1.09003 * 109.47510 * 150.02126 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9609 3.7730 0.0015 7 7 5.1209 3.2664 0.0002 8 6 6.0915 2.2978 -0.0008 9 1 5.8135 1.2548 -0.0372 10 6 7.4321 2.6580 0.0395 11 7 7.7700 3.9098 0.2549 12 14 8.7552 1.3636 -0.2128 13 1 9.1688 1.3500 -1.6389 14 1 9.9284 1.6823 0.6399 15 1 8.2200 0.0296 0.1601 16 6 5.4815 4.6175 0.0003 17 6 5.6880 5.2828 -1.2022 18 6 6.0378 6.6181 -1.1997 19 6 6.1946 7.2921 0.0005 20 9 6.5420 8.5976 0.0006 21 6 5.9953 6.6296 1.2003 22 6 5.6391 5.2954 1.2027 23 6 5.4229 4.5751 2.5086 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8332 0.9768 -0.8908 30 1 3.8341 0.9764 0.8892 31 1 8.7064 4.1615 0.2827 32 1 5.5706 4.7565 -2.1381 33 1 6.1940 7.1367 -2.1341 34 1 6.1177 7.1571 2.1347 35 1 6.3636 4.1366 2.8418 36 1 5.0654 5.2810 3.2582 37 1 4.6833 3.7863 2.3704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602394801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -90.033237 kcal Electronic energy + Delta-G solvation = -22537.614335 eV Core-core repulsion = 19002.175503 eV Total energy + Delta-G solvation = -3535.438832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.05497 -39.64395 -37.86970 -36.67650 -34.72453 -31.80553 -31.68190 -31.25656 -29.12660 -26.94623 -25.94066 -24.85398 -22.58008 -21.84016 -20.80528 -19.39334 -17.96419 -16.59087 -16.31511 -16.02556 -15.68436 -15.60096 -14.92791 -14.74045 -14.50547 -13.98634 -13.77100 -13.24419 -12.92944 -12.60187 -12.46562 -12.36014 -12.24431 -12.18013 -11.94517 -11.54271 -11.35164 -11.10442 -11.07596 -10.95061 -10.74694 -10.55225 -10.44317 -10.29453 -9.54863 -9.27054 -8.61977 -8.16309 -7.86275 -7.62579 -6.20267 -4.12754 2.25380 2.31446 3.00942 3.10398 3.13719 3.62685 3.66373 4.01891 4.64891 4.79851 4.95218 5.17959 5.18336 5.35440 5.50944 5.65327 5.68524 5.74395 5.78585 5.89136 5.94072 6.02230 6.05065 6.22232 6.28853 6.40836 6.53514 6.62161 6.75823 7.01830 7.08724 7.13591 7.24530 7.46471 7.52271 7.65249 7.86051 8.31675 8.88596 9.22727 9.66418 10.50836 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.006849 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.283320 B = 4086.948199 C = 5450.751680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.065 3.935 5 C 0.467 3.533 6 O -0.573 6.573 7 N -0.416 5.416 8 C -0.349 4.349 9 H 0.105 0.895 10 C 0.041 3.959 11 N -0.850 5.850 12 Si 0.925 3.075 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.251 3.749 17 C -0.085 4.085 18 C -0.153 4.153 19 C 0.066 3.934 20 F -0.159 7.159 21 C -0.150 4.150 22 C -0.022 4.022 23 C -0.094 4.094 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.273 0.727 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -4.428 0.543 5.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.287 6.287 4 C -0.015 4.015 5 C 0.256 3.744 6 O -0.456 6.456 7 N -0.135 5.135 8 C -0.474 4.474 9 H 0.123 0.877 10 C -0.166 4.166 11 N -0.486 5.486 12 Si 0.752 3.248 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.195 1.195 16 C 0.160 3.840 17 C -0.104 4.104 18 C -0.173 4.173 19 C 0.047 3.953 20 F -0.138 7.138 21 C -0.170 4.170 22 C -0.024 4.024 23 C -0.151 4.151 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.435 -3.706 0.575 5.086 hybrid contribution 1.443 -0.762 -0.218 1.646 sum -1.992 -4.468 0.357 4.905 Atomic orbital electron populations 1.21710 0.94030 1.01626 1.03236 1.22443 0.95439 0.84526 0.99777 1.87986 1.20275 1.25076 1.95379 1.22038 0.81459 0.96207 1.01768 1.19672 0.82124 0.89856 0.82728 1.90620 1.49103 1.51495 1.54353 1.41255 1.04367 1.03548 1.64333 1.19709 0.85614 0.88504 1.53596 0.87722 1.25230 0.98286 0.97064 0.96013 1.69897 1.18486 1.15720 1.44525 0.85931 0.80268 0.80171 0.78475 1.20297 1.20738 1.19478 1.16759 0.92366 0.83112 0.91743 1.20717 0.99124 0.93105 0.97498 1.20551 1.05657 0.95114 0.95961 1.17409 1.05247 0.77847 0.94789 1.91375 1.90479 1.34406 1.97560 1.20467 1.05675 0.94861 0.95974 1.19399 0.95920 0.92115 0.94955 1.20521 1.01958 0.99266 0.93379 0.91499 0.91885 0.91888 0.93675 0.93660 0.91166 0.91107 0.91458 0.86819 0.86499 0.86472 0.90981 0.93334 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.06 0.76 6.66 37.16 0.25 1.01 16 3 O -0.37 -7.07 9.88 -55.14 -0.54 -7.62 16 4 C 0.06 1.25 4.79 36.00 0.17 1.42 16 5 C 0.47 11.07 6.94 -10.99 -0.08 10.99 16 6 O -0.57 -15.43 16.47 -14.36 -0.24 -15.67 16 7 N -0.42 -9.92 1.82 -58.97 -0.11 -10.03 16 8 C -0.35 -8.05 9.37 -14.95 -0.14 -8.19 16 9 H 0.11 2.22 6.32 -52.48 -0.33 1.89 16 10 C 0.04 0.94 5.40 -17.49 -0.09 0.85 16 11 N -0.85 -20.56 9.45 55.49 0.52 -20.04 16 12 Si 0.93 18.25 29.56 -169.99 -5.03 13.22 16 13 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 16 C 0.25 6.05 2.21 -83.68 -0.19 5.87 16 17 C -0.08 -1.94 9.44 -39.38 -0.37 -2.32 16 18 C -0.15 -3.23 10.02 -39.54 -0.40 -3.62 16 19 C 0.07 1.40 7.30 -39.37 -0.29 1.12 16 20 F -0.16 -3.19 17.26 2.25 0.04 -3.15 16 21 C -0.15 -3.19 9.67 -39.54 -0.38 -3.57 16 22 C -0.02 -0.51 4.65 -104.42 -0.49 -0.99 16 23 C -0.09 -1.96 9.77 36.01 0.35 -1.61 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 30 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 31 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.11 2.53 8.06 -52.48 -0.42 2.11 16 33 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.06 1.33 6.85 -51.93 -0.36 0.97 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -28.50 320.67 -6.65 -35.15 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.87 Total: 3.70 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.27 Total: -0.40 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.42 Total: -30.06 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.78 Total: -23.29 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.50 -6.65 -35.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602394801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.885 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds