Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46997 * 2 1 4 4 C 1.42897 * 113.99890 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47021 * 180.02562 * 4 3 2 6 6 O 1.21291 * 120.00095 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00347 * 179.97438 * 5 4 3 8 8 C 1.37128 * 119.99713 * 0.02562 * 7 5 4 9 9 H 1.08003 * 119.99828 * 2.17711 * 8 7 5 10 10 C 1.38874 * 120.00233 * 181.91212 * 8 7 5 11 11 N 1.31430 * 119.99922 * 8.93103 * 10 8 7 12 12 Si 1.86804 * 120.00230 * 188.93958 * 10 8 7 13 13 H 1.48499 * 109.47223 * 95.05849 * 12 10 8 14 14 H 1.48495 * 109.47065 * 215.05895 * 12 10 8 15 15 H 1.48497 * 109.46974 * 335.05851 * 12 10 8 16 16 C 1.39836 * 120.00566 * 179.97438 * 7 5 4 17 17 C 1.38974 * 120.05116 * 268.67068 * 16 7 5 18 18 C 1.38041 * 119.94577 * 179.69601 * 17 16 7 19 19 C 1.38540 * 120.05474 * 0.57593 * 18 17 16 20 20 F 1.35094 * 119.95110 * 179.74502 * 19 18 17 21 21 C 1.38497 * 120.09946 * 359.71799 * 19 18 17 22 22 C 1.38084 * 120.05456 * 359.97438 * 21 19 18 23 23 C 1.50700 * 120.02555 * 179.97438 * 22 21 19 24 24 H 1.08999 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47068 * 299.99578 * 1 2 3 26 26 H 1.09000 * 109.46952 * 60.00133 * 1 2 3 27 27 H 1.08994 * 109.47068 * 240.00422 * 2 1 3 28 28 H 1.09000 * 109.46952 * 119.99867 * 2 1 3 29 29 H 1.08996 * 109.46941 * 60.00104 * 4 3 2 30 30 H 1.09005 * 109.47207 * 300.00243 * 4 3 2 31 31 H 0.97004 * 120.00325 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.02599 * 359.97210 * 17 16 7 33 33 H 1.08002 * 119.97363 * 180.27521 * 18 17 16 34 34 H 1.08006 * 119.97016 * 180.02562 * 21 19 18 35 35 H 1.09003 * 109.47053 * 270.01824 * 23 22 21 36 36 H 1.09001 * 109.47349 * 30.01966 * 23 22 21 37 37 H 1.09003 * 109.47510 * 150.02126 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9609 3.7730 0.0015 7 7 5.1209 3.2664 0.0002 8 6 6.0915 2.2978 -0.0008 9 1 5.8135 1.2548 -0.0372 10 6 7.4321 2.6580 0.0395 11 7 7.7700 3.9098 0.2549 12 14 8.7552 1.3636 -0.2128 13 1 9.1688 1.3500 -1.6389 14 1 9.9284 1.6823 0.6399 15 1 8.2200 0.0296 0.1601 16 6 5.4815 4.6175 0.0003 17 6 5.6880 5.2828 -1.2022 18 6 6.0378 6.6181 -1.1997 19 6 6.1946 7.2921 0.0005 20 9 6.5420 8.5976 0.0006 21 6 5.9953 6.6296 1.2003 22 6 5.6391 5.2954 1.2027 23 6 5.4229 4.5751 2.5086 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8332 0.9768 -0.8908 30 1 3.8341 0.9764 0.8892 31 1 8.7064 4.1615 0.2827 32 1 5.5706 4.7565 -2.1381 33 1 6.1940 7.1367 -2.1341 34 1 6.1177 7.1571 2.1347 35 1 6.3636 4.1366 2.8418 36 1 5.0654 5.2810 3.2582 37 1 4.6833 3.7863 2.3704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602394801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -103.838229 kcal Electronic energy + Delta-G solvation = -22538.212965 eV Core-core repulsion = 19002.175503 eV Total energy + Delta-G solvation = -3536.037462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.69257 -41.38314 -39.41273 -38.22794 -36.52457 -33.56070 -33.40735 -32.38796 -30.76765 -28.52448 -27.61014 -26.60250 -23.68687 -23.48473 -22.49668 -21.16082 -19.65170 -18.20616 -17.97299 -17.57610 -17.12738 -17.04710 -16.70310 -16.38058 -16.12469 -15.48247 -15.35621 -14.90034 -14.44995 -14.24282 -14.09651 -13.84600 -13.75298 -13.60326 -13.21044 -13.14989 -12.99036 -12.74730 -12.45616 -12.29185 -12.24711 -12.10915 -11.99373 -11.98129 -11.28495 -10.56692 -10.44207 -9.96984 -9.57055 -9.34561 -7.95606 -5.93649 0.53948 0.59968 1.42630 1.51112 1.60705 1.88021 2.14528 2.45498 2.92526 3.19712 3.31849 3.49430 3.98731 4.06677 4.12508 4.20404 4.33232 4.39255 4.42895 4.44990 4.53906 4.64194 4.75015 4.84960 4.87367 4.93486 5.05323 5.06823 5.29678 5.31667 5.38095 5.40696 5.51825 5.71700 5.92418 6.14156 6.24101 6.56342 7.09804 7.45726 7.88513 8.73921 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.006849 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.283320 B = 4086.948199 C = 5450.751680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.401 6.401 4 C 0.075 3.925 5 C 0.451 3.549 6 O -0.618 6.618 7 N -0.417 5.417 8 C -0.362 4.362 9 H 0.122 0.878 10 C 0.004 3.996 11 N -0.869 5.869 12 Si 0.989 3.011 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.255 1.255 16 C 0.227 3.773 17 C -0.106 4.106 18 C -0.151 4.151 19 C 0.061 3.939 20 F -0.151 7.151 21 C -0.151 4.151 22 C -0.043 4.043 23 C -0.085 4.085 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.269 0.731 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -5.659 0.738 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.321 6.321 4 C -0.004 4.004 5 C 0.242 3.758 6 O -0.504 6.504 7 N -0.135 5.135 8 C -0.487 4.487 9 H 0.140 0.860 10 C -0.201 4.201 11 N -0.505 5.505 12 Si 0.813 3.187 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.178 1.178 16 C 0.136 3.864 17 C -0.125 4.125 18 C -0.170 4.170 19 C 0.042 3.958 20 F -0.130 7.130 21 C -0.170 4.170 22 C -0.045 4.045 23 C -0.142 4.142 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.986 -4.957 0.772 5.838 hybrid contribution 1.293 -0.341 -0.286 1.368 sum -1.693 -5.297 0.486 5.582 Atomic orbital electron populations 1.21753 0.92632 1.03549 1.02416 1.22804 0.96627 0.82384 1.01347 1.87955 1.19936 1.28534 1.95658 1.21913 0.82156 0.93129 1.03170 1.20487 0.81654 0.91548 0.82152 1.90568 1.50143 1.53144 1.56575 1.41471 1.04738 1.03823 1.63460 1.20149 0.85744 0.89218 1.53621 0.86006 1.25982 0.99871 0.98700 0.95511 1.70048 1.18316 1.17230 1.44904 0.84953 0.77408 0.78680 0.77635 1.20793 1.21451 1.17833 1.17131 0.92970 0.83675 0.92615 1.20832 1.00368 0.94111 0.97237 1.20800 1.04462 0.94531 0.97245 1.17484 1.05167 0.78223 0.94898 1.91392 1.90361 1.33718 1.97535 1.20752 1.04615 0.94485 0.97178 1.19674 0.96529 0.92954 0.95314 1.20441 1.01161 0.99205 0.93364 0.88150 0.92713 0.92726 0.92026 0.92020 0.89489 0.89513 0.91993 0.87190 0.83936 0.84017 0.91447 0.90676 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 10.28 71.98 0.74 -2.43 16 2 C 0.04 1.14 6.66 71.98 0.48 1.62 16 3 O -0.40 -15.20 9.88 -129.94 -1.28 -16.48 16 4 C 0.08 2.85 4.79 71.24 0.34 3.20 16 5 C 0.45 21.65 6.94 87.66 0.61 22.25 16 6 O -0.62 -34.27 16.47 15.97 0.26 -34.01 16 7 N -0.42 -20.05 1.82 -458.88 -0.84 -20.88 16 8 C -0.36 -16.49 9.37 84.02 0.79 -15.71 16 9 H 0.12 4.97 6.32 -2.91 -0.02 4.95 16 10 C 0.00 0.17 5.40 84.91 0.46 0.62 16 11 N -0.87 -41.84 9.45 21.65 0.20 -41.64 16 12 Si 0.99 36.51 29.56 68.60 2.03 38.53 16 13 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 14 H -0.29 -10.91 7.11 99.48 0.71 -10.20 16 15 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 16 C 0.23 11.06 2.21 38.21 0.08 11.15 16 17 C -0.11 -4.91 9.44 22.40 0.21 -4.70 16 18 C -0.15 -6.29 10.02 22.30 0.22 -6.07 16 19 C 0.06 2.54 7.30 22.40 0.16 2.71 16 20 F -0.15 -5.80 17.26 44.97 0.78 -5.03 16 21 C -0.15 -6.28 9.67 22.29 0.22 -6.07 16 22 C -0.04 -1.97 4.65 -19.74 -0.09 -2.06 16 23 C -0.08 -3.51 9.77 71.24 0.70 -2.81 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 2.94 7.87 -2.39 -0.02 2.93 16 30 H 0.09 2.95 7.93 -2.38 -0.02 2.93 16 31 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 32 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 33 H 0.14 5.03 8.06 -2.91 -0.02 5.01 16 34 H 0.14 5.05 8.06 -2.91 -0.02 5.02 16 35 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.07 2.61 8.09 -2.39 -0.02 2.59 16 37 H 0.04 1.89 6.85 -2.39 -0.02 1.87 16 Total: -1.00 -61.33 320.67 7.14 -54.19 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 1.07 Total: 23.60 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 4.92 Total: 1.71 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.63 Total: -62.52 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -1.02 Total: -50.49 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.78 Total: -5.03 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.53 kcal Total: -61.33 7.14 -54.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602394801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.649 kcal (2) G-P(sol) polarization free energy of solvation -61.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds