Wall clock time and date at job start Tue Mar 31 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48495 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47288 * 300.00337 * 3 2 1 6 6 H 1.48504 * 109.46666 * 60.00071 * 3 2 1 7 7 C 1.39925 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00567 * 196.32336 * 7 2 1 9 9 C 1.41414 * 119.99802 * 16.32636 * 7 2 1 10 10 C 1.40783 * 120.20832 * 205.21780 * 9 7 2 11 11 C 1.37646 * 119.89617 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32122 * 359.74582 * 11 10 9 13 13 C 1.39289 * 120.42486 * 0.51448 * 12 11 10 14 14 N 1.39795 * 119.95310 * 179.76196 * 13 12 11 15 15 C 1.38644 * 119.99806 * 319.56310 * 14 13 12 16 16 C 1.39662 * 120.53380 * 351.68976 * 15 14 13 17 17 C 1.38087 * 118.33424 * 180.02562 * 16 15 14 18 18 C 1.50695 * 120.40045 * 179.97438 * 17 16 15 19 19 C 1.53001 * 117.50205 * 343.62637 * 18 17 16 20 20 C 1.52993 * 60.00100 * 252.50965 * 19 18 17 21 21 N 1.32576 * 119.19713 * 0.02562 * 17 16 15 22 22 C 1.31761 * 121.01590 * 359.97438 * 21 17 16 23 23 N 1.31773 * 121.83296 * 359.70919 * 22 21 17 24 24 C 1.38313 * 120.09814 * 359.48517 * 13 12 11 25 25 H 0.97001 * 120.00109 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05274 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.83897 * 180.02562 * 11 10 9 28 28 H 1.07996 * 119.78763 * 180.25935 * 12 11 10 29 29 H 0.97000 * 120.00294 * 139.28010 * 14 13 12 30 30 H 1.08001 * 120.82945 * 359.97438 * 16 15 14 31 31 H 1.08998 * 115.54918 * 129.33399 * 18 17 16 32 32 H 1.09004 * 117.49450 * 0.02562 * 19 18 17 33 33 H 1.09004 * 117.49936 * 145.01550 * 19 18 17 34 34 H 1.09003 * 117.49346 * 252.50925 * 20 19 18 35 35 H 1.08998 * 117.51948 * 107.48017 * 20 19 18 36 36 H 1.08003 * 119.08434 * 180.02562 * 22 21 17 37 37 H 1.07994 * 120.16304 * 180.23228 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0553 -1.2308 0.2623 9 6 1.3437 -2.4116 -0.3454 10 6 1.8188 -3.6472 0.1338 11 6 1.1676 -4.8112 -0.2063 12 6 0.0429 -4.7729 -1.0141 13 6 -0.4355 -3.5584 -1.5000 14 7 -1.5685 -3.5317 -2.3185 15 6 -1.7418 -4.5015 -3.2940 16 6 -0.7177 -5.4049 -3.5864 17 6 -0.9390 -6.3518 -4.5668 18 6 0.1342 -7.3490 -4.9201 19 6 1.5605 -7.0459 -4.4566 20 6 1.1932 -6.9169 -5.9362 21 7 -2.1067 -6.3724 -5.1941 22 6 -3.0534 -5.5060 -4.8953 23 7 -2.8878 -4.5897 -3.9629 24 6 0.2052 -2.3781 -1.1692 25 1 -0.4850 0.8400 0.0004 26 1 2.6929 -3.6817 0.7672 27 1 1.5326 -5.7585 0.1622 28 1 -0.4638 -5.6911 -1.2721 29 1 -2.2354 -2.8371 -2.2012 30 1 0.2241 -5.3634 -3.0594 31 1 -0.1799 -8.3926 -4.9334 32 1 1.7224 -6.1253 -3.8958 33 1 2.1850 -7.8902 -4.1648 34 1 1.5762 -7.6764 -6.6178 35 1 1.1135 -5.9114 -6.3495 36 1 -3.9930 -5.5512 -5.4258 37 1 -0.1670 -1.4355 -1.5423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603392511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:19 Heat of formation + Delta-G solvation = 95.964570 kcal Electronic energy + Delta-G solvation = -20847.860020 eV Core-core repulsion = 17783.548634 eV Total energy + Delta-G solvation = -3064.311386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80111 -38.24770 -37.21711 -35.50249 -33.63449 -32.38344 -30.68632 -29.73268 -28.07024 -25.64797 -24.74962 -23.64042 -22.24825 -21.43681 -20.95626 -20.16189 -17.79162 -17.66839 -16.74863 -15.84278 -15.39780 -15.23079 -14.79890 -14.49537 -14.45605 -14.32960 -13.86978 -13.43903 -12.95152 -12.57224 -12.02022 -11.89137 -11.63754 -11.51486 -11.26260 -11.18090 -10.93190 -10.71325 -10.52037 -10.43091 -10.24881 -9.90666 -9.81583 -9.42688 -9.30419 -8.91024 -8.43867 -7.58215 -7.06182 -6.77755 -4.53912 1.34952 1.57074 2.61817 2.82664 3.00339 3.04838 3.08367 3.47336 3.73919 3.82753 4.12940 4.31241 4.47301 4.65213 4.87665 4.97277 5.14078 5.21213 5.47142 5.57383 5.63170 5.74277 5.91609 5.99223 6.06176 6.16233 6.19908 6.30828 6.49058 6.67787 6.87534 6.88900 6.98810 7.10360 7.35202 7.50418 7.64455 7.78261 7.88498 8.12190 8.15467 8.45018 8.62280 8.72607 8.77274 10.03723 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.004545 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.973901 B = 6159.024904 C = 6691.230384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.125 3.875 10 C -0.229 4.229 11 C -0.075 4.075 12 C -0.263 4.263 13 C 0.154 3.846 14 N -0.640 5.640 15 C 0.439 3.561 16 C -0.274 4.274 17 C 0.217 3.783 18 C -0.108 4.108 19 C -0.169 4.169 20 C -0.160 4.160 21 N -0.566 5.566 22 C 0.329 3.671 23 N -0.588 5.588 24 C -0.178 4.178 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.411 0.589 30 H 0.161 0.839 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.190 0.810 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -7.526 -6.938 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.121 3.879 10 C -0.249 4.249 11 C -0.094 4.094 12 C -0.284 4.284 13 C 0.061 3.939 14 N -0.263 5.263 15 C 0.195 3.805 16 C -0.301 4.301 17 C 0.077 3.923 18 C -0.127 4.127 19 C -0.207 4.207 20 C -0.198 4.198 21 N -0.286 5.286 22 C 0.039 3.961 23 N -0.313 5.313 24 C -0.200 4.200 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.248 0.752 30 H 0.179 0.821 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.207 0.793 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.945 -7.412 -7.296 10.443 hybrid contribution 0.535 1.176 0.610 1.429 sum -0.411 -6.236 -6.686 9.152 Atomic orbital electron populations 1.69804 1.07636 1.29352 1.34912 1.25934 0.94773 1.01496 0.92060 0.86241 0.81014 0.80753 0.78666 1.18275 1.19660 1.19873 1.19639 0.97774 0.90891 1.40406 0.90033 1.17408 0.90374 0.92301 0.87773 1.21047 1.03996 0.92769 1.07111 1.20375 0.95182 0.96777 0.97082 1.20270 1.03128 0.95140 1.09899 1.17540 0.87663 0.95088 0.93594 1.42041 1.23654 1.28190 1.32450 1.18603 0.88510 0.87180 0.86175 1.22521 1.02920 1.00299 1.04355 1.20353 0.91327 0.91689 0.88978 1.20713 0.87824 0.98057 1.06073 1.23129 0.95946 1.04333 0.97261 1.22934 1.01322 1.02936 0.92619 1.68049 1.02261 1.27846 1.30433 1.24478 0.97157 0.84923 0.89565 1.67906 1.22844 1.27637 1.12894 1.21158 0.99482 0.95570 1.03773 0.90755 0.88601 0.88752 0.88707 0.75243 0.82123 0.86035 0.87655 0.87978 0.88222 0.88789 0.79298 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.92 55.55 0.61 -18.79 16 2 C 0.08 1.80 5.17 -17.35 -0.09 1.71 16 3 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.43 9.06 -37.74 -0.34 -11.77 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.12 3.11 5.57 -106.85 -0.60 2.51 16 10 C -0.23 -5.21 9.79 -38.84 -0.38 -5.59 16 11 C -0.08 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.26 -5.50 7.38 -39.08 -0.29 -5.79 16 13 C 0.15 3.37 5.91 -83.81 -0.49 2.88 16 14 N -0.64 -12.64 5.47 -9.88 -0.05 -12.70 16 15 C 0.44 8.28 7.46 -154.68 -1.15 7.12 16 16 C -0.27 -4.86 7.33 -39.11 -0.29 -5.14 16 17 C 0.22 3.50 6.49 -82.33 -0.53 2.96 16 18 C -0.11 -1.39 6.25 -91.77 -0.57 -1.97 16 19 C -0.17 -1.98 9.82 -26.73 -0.26 -2.25 16 20 C -0.16 -1.81 10.23 -26.73 -0.27 -2.08 16 21 N -0.57 -9.17 10.37 -10.88 -0.11 -9.28 16 22 C 0.33 5.10 12.28 -92.20 -1.13 3.97 16 23 N -0.59 -10.41 10.47 -13.78 -0.14 -10.55 16 24 C -0.18 -4.31 8.60 -38.67 -0.33 -4.64 16 25 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 26 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 27 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.89 6.54 -52.49 -0.34 1.55 16 29 H 0.41 7.72 8.95 -40.82 -0.37 7.36 16 30 H 0.16 2.92 3.78 -52.49 -0.20 2.72 16 31 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.11 1.41 6.47 -51.93 -0.34 1.07 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.19 2.17 8.06 -52.48 -0.42 1.74 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -26.63 314.33 -11.21 -37.84 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -4.07 Total: 15.99 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -7.14 Total: -20.04 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.30 Total: -51.31 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.63 -11.21 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603392511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.807 kcal (2) G-P(sol) polarization free energy of solvation -26.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds