Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35537 * 125.67791 * 2 1 4 4 C 1.35450 * 108.87419 * 179.97438 * 3 2 1 5 5 N 1.48012 * 126.06735 * 180.02562 * 4 3 2 6 6 O 1.21798 * 119.99946 * 359.97438 * 5 4 3 7 7 O 1.21802 * 119.99614 * 179.97438 * 5 4 3 8 8 C 1.39841 * 107.86320 * 359.97438 * 4 3 2 9 9 C 1.37651 * 125.67828 * 179.69074 * 2 1 3 10 10 C 1.46674 * 126.23507 * 0.03814 * 9 2 1 11 11 O 1.21698 * 120.00043 * 5.53657 * 10 9 2 12 12 N 1.34777 * 120.00241 * 185.53924 * 10 9 2 13 13 C 1.46501 * 119.99842 * 185.14500 * 12 10 9 14 14 C 1.53002 * 109.46704 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47407 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99878 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00091 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47021 * 60.00329 * 20 18 16 22 22 H 1.48502 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47038 * 299.99612 * 20 18 16 24 24 H 1.09000 * 109.47118 * 86.05823 * 1 2 3 25 25 H 1.09001 * 109.46889 * 326.05632 * 1 2 3 26 26 H 1.09000 * 109.46524 * 206.05618 * 1 2 3 27 27 H 1.08006 * 125.55887 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.45565 * 180.02562 * 8 4 3 29 29 H 0.96996 * 119.99843 * 5.14235 * 12 10 9 30 30 H 1.08992 * 109.47363 * 299.99404 * 13 12 10 31 31 H 1.09003 * 109.47322 * 60.00230 * 13 12 10 32 32 H 1.09009 * 109.46915 * 299.99580 * 14 13 12 33 33 H 1.08995 * 109.47528 * 59.99525 * 14 13 12 34 34 H 1.09003 * 109.46724 * 299.99977 * 15 14 13 35 35 H 1.09004 * 109.47217 * 59.99299 * 15 14 13 36 36 H 0.97002 * 119.99937 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7094 0.0006 5 7 4.7323 1.6028 0.0013 6 8 4.5811 2.8114 0.0010 7 8 5.8545 1.1294 0.0022 8 6 3.5781 -0.6888 0.0015 9 6 2.2679 -1.1181 0.0060 10 6 1.8125 -2.5124 0.0128 11 8 0.6265 -2.7657 -0.0883 12 7 2.7075 -3.5131 0.1309 13 6 2.2669 -4.9062 0.0247 14 6 3.4703 -5.8359 0.1935 15 6 3.0103 -7.2909 0.0819 16 6 4.1957 -8.2066 0.2475 17 1 5.1788 -7.7923 0.4152 18 6 4.0250 -9.5733 0.1850 19 7 2.8277 -10.0779 -0.0186 20 14 5.4942 -10.7084 0.3911 21 1 6.1098 -10.4844 1.7238 22 1 5.0478 -12.1206 0.2826 23 1 6.4930 -10.4228 -0.6700 24 1 -0.3633 0.0706 -1.0252 25 1 -0.3633 0.8526 0.5738 26 1 -0.3632 -0.9232 0.4514 27 1 1.9081 2.1236 -0.0004 28 1 4.4584 -1.3143 0.0026 29 1 3.6434 -3.3109 0.2863 30 1 1.5335 -5.1157 0.8032 31 1 1.8155 -5.0709 -0.9537 32 1 4.2035 -5.6263 -0.5855 33 1 3.9223 -5.6713 1.1716 34 1 2.2770 -7.5008 0.8605 35 1 2.5586 -7.4552 -0.8965 36 1 2.7075 -11.0394 -0.0622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -26.826934 kcal Electronic energy + Delta-G solvation = -20796.250577 eV Core-core repulsion = 17283.472537 eV Total energy + Delta-G solvation = -3512.778040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.50001 -42.49444 -40.40346 -37.52820 -37.08414 -35.38404 -34.48544 -33.21614 -31.35391 -28.99465 -28.45306 -26.47314 -25.38115 -23.58977 -22.41539 -22.22329 -21.13118 -19.87375 -19.49710 -18.54408 -18.50838 -17.99787 -17.15534 -17.02863 -16.77963 -16.44011 -16.39257 -15.38325 -15.17053 -14.84655 -14.28795 -14.11391 -13.77535 -13.64432 -13.56230 -13.44184 -12.72899 -12.65662 -12.56709 -12.43087 -12.31833 -12.21382 -11.68667 -11.66766 -11.31028 -11.14016 -10.62794 -10.54576 -10.34136 -9.92445 -8.19929 -6.30900 -0.79810 -0.02540 0.33324 1.12286 1.25185 1.42403 1.44606 1.52396 1.95426 2.14124 2.42394 3.14265 3.22603 3.39238 3.62472 3.76431 4.09918 4.18296 4.19678 4.29148 4.34101 4.53169 4.64806 4.69048 4.91119 4.92795 5.14344 5.17056 5.29336 5.36042 5.51854 5.54652 5.70900 5.84403 6.21909 6.32514 6.60876 6.86611 6.93255 7.38842 8.91796 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.002919 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.132506 B = 9589.359642 C =10744.687587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.386 5.386 3 C 0.142 3.858 4 C -0.155 4.155 5 N 0.068 4.932 6 O -0.172 6.172 7 O -0.205 6.205 8 C -0.079 4.079 9 C -0.041 4.041 10 C 0.586 3.414 11 O -0.570 6.570 12 N -0.700 5.700 13 C 0.133 3.867 14 C -0.105 4.105 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.102 0.898 25 H 0.132 0.868 26 H 0.094 0.906 27 H 0.240 0.760 28 H 0.182 0.818 29 H 0.417 0.583 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.068 0.932 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 24.719 0.500 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.057 5.057 3 C -0.004 4.004 4 C -0.247 4.247 5 N 0.580 4.420 6 O -0.387 6.387 7 O -0.411 6.411 8 C -0.104 4.104 9 C -0.153 4.153 10 C 0.373 3.627 11 O -0.452 6.452 12 N -0.350 5.350 13 C 0.010 3.990 14 C -0.143 4.143 15 C -0.013 4.013 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.120 0.880 25 H 0.151 0.849 26 H 0.112 0.888 27 H 0.256 0.744 28 H 0.199 0.801 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.471 23.815 0.393 24.439 hybrid contribution 1.260 -0.761 0.057 1.474 sum -4.211 23.054 0.450 23.440 Atomic orbital electron populations 1.22849 0.71723 1.07406 1.06448 1.44340 1.09179 1.03629 1.48511 1.22359 0.86853 0.94689 0.96461 1.20214 0.85968 0.90863 1.27671 1.42802 1.01898 1.00946 0.96340 1.94498 1.92974 0.97266 1.53990 1.94574 1.10390 1.79962 1.56166 1.21418 0.96797 0.92215 0.99991 1.19953 0.89286 0.88448 1.17657 1.16942 0.85514 0.83570 0.76663 1.90810 1.17078 1.84970 1.52325 1.45693 1.12074 1.05656 1.71618 1.21347 0.97739 0.78564 1.01381 1.21632 0.96240 0.94264 1.02187 1.18928 0.95657 0.91463 0.95257 1.21671 0.95380 0.91962 1.49057 0.91621 1.25977 0.98702 1.00363 0.94872 1.70092 1.23794 1.12780 1.50797 0.85516 0.79176 0.77226 0.79238 1.19098 1.21202 1.19106 0.87992 0.84935 0.88755 0.74373 0.80051 0.74614 0.92263 0.92242 0.91251 0.91319 0.98739 0.98724 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.65 127.77 1.36 1.82 16 2 N -0.39 -5.26 3.16 -534.30 -1.69 -6.95 16 3 C 0.14 1.63 11.06 83.48 0.92 2.55 16 4 C -0.16 -2.83 7.11 36.12 0.26 -2.58 16 5 N 0.07 1.59 4.45 -47.08 -0.21 1.38 16 6 O -0.17 -3.99 19.02 18.89 0.36 -3.63 16 7 O -0.21 -5.56 19.05 18.88 0.36 -5.20 16 8 C -0.08 -1.44 10.07 22.57 0.23 -1.21 16 9 C -0.04 -0.79 6.88 40.35 0.28 -0.51 16 10 C 0.59 14.64 7.77 86.45 0.67 15.31 16 11 O -0.57 -17.51 14.66 -4.34 -0.06 -17.57 16 12 N -0.70 -17.08 5.53 -467.08 -2.58 -19.67 16 13 C 0.13 4.19 5.68 86.38 0.49 4.68 16 14 C -0.11 -3.78 5.27 30.60 0.16 -3.62 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 17 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 19 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 20 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.09 1.35 6.21 -2.39 -0.01 1.34 16 27 H 0.24 0.68 8.06 -2.91 -0.02 0.65 16 28 H 0.18 2.79 7.50 -2.91 -0.02 2.76 16 29 H 0.42 7.89 7.43 -92.71 -0.69 7.20 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -72.77 324.43 4.12 -68.65 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.42 Total: 4.67 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 5.21 Total: -11.15 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -4.20 Total: -81.00 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.66 Total: -26.40 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -72.77 4.12 -68.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.824 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds