Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99867 * 2 1 4 4 C 1.52993 * 109.47154 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47054 * 64.99903 * 4 3 2 6 6 C 1.36935 * 119.99698 * 269.99736 * 5 4 3 7 7 H 1.07994 * 120.00335 * 349.43229 * 6 5 4 8 8 C 1.38818 * 119.99441 * 169.42935 * 6 5 4 9 9 N 1.31615 * 120.00088 * 334.58696 * 8 6 5 10 10 Si 1.86796 * 119.99814 * 154.58933 * 8 6 5 11 11 H 1.48500 * 109.47116 * 89.99750 * 10 8 6 12 12 H 1.48493 * 109.47252 * 209.99641 * 10 8 6 13 13 H 1.48502 * 109.47218 * 330.00326 * 10 8 6 14 14 C 1.46500 * 120.00063 * 89.99870 * 5 4 3 15 15 C 1.50695 * 109.46949 * 272.50511 * 14 5 4 16 16 O 1.21276 * 120.00331 * 359.97438 * 15 14 5 17 17 C 1.46985 * 119.99642 * 179.97438 * 15 14 5 18 18 C 1.39955 * 120.19800 * 359.97438 * 17 15 14 19 19 C 1.37760 * 119.84902 * 180.02562 * 18 17 15 20 20 C 1.38515 * 120.25605 * 0.02755 * 19 18 17 21 21 C 1.38221 * 120.39877 * 359.97438 * 20 19 18 22 22 C 1.38278 * 120.14700 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.13136 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47309 * 300.00349 * 1 2 3 25 25 H 1.09000 * 109.47079 * 60.00380 * 1 2 3 26 26 H 1.08996 * 109.46913 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47039 * 59.99877 * 3 2 1 28 28 H 1.09002 * 109.46904 * 299.99983 * 3 2 1 29 29 H 1.09002 * 109.47334 * 305.00041 * 4 3 2 30 30 H 1.08997 * 109.47138 * 184.99796 * 4 3 2 31 31 H 0.97005 * 120.00183 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46978 * 152.50067 * 14 5 4 33 33 H 1.09004 * 109.46907 * 32.50018 * 14 5 4 34 34 H 1.07998 * 120.06905 * 0.30222 * 18 17 15 35 35 H 1.08006 * 119.87154 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.80440 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.93178 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0979 -0.7974 -1.3344 7 1 4.0360 -1.4008 -0.4409 8 6 4.3002 -1.4018 -2.5676 9 7 3.8937 -0.8046 -3.6678 10 14 5.1494 -3.0627 -2.6656 11 1 4.1343 -4.1433 -2.5810 12 1 5.8802 -3.1698 -3.9538 13 1 6.1085 -3.1954 -1.5397 14 6 4.2882 1.3998 -2.4131 15 6 3.0314 1.6434 -3.2080 16 8 1.9791 1.1655 -2.8404 17 6 3.0809 2.4602 -4.4290 18 6 4.2929 3.0141 -4.8568 19 6 4.3309 3.7789 -6.0019 20 6 3.1744 4.0021 -6.7309 21 6 1.9719 3.4601 -6.3180 22 6 1.9148 2.6890 -5.1716 23 9 0.7393 2.1590 -4.7686 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 4.0354 -1.2268 -4.5296 32 1 5.0218 0.8922 -3.0394 33 1 4.6956 2.3531 -2.0763 34 1 5.1970 2.8386 -4.2928 35 1 5.2661 4.2062 -6.3326 36 1 3.2126 4.6032 -7.6274 37 1 1.0749 3.6386 -6.8923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639669413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = -60.130398 kcal Electronic energy + Delta-G solvation = -22987.838041 eV Core-core repulsion = 19453.695893 eV Total energy + Delta-G solvation = -3534.142148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.31450 -38.94872 -37.57357 -36.65072 -34.81990 -31.45171 -31.25965 -30.08660 -28.71330 -26.77139 -25.50036 -23.65126 -23.00332 -22.03838 -20.47663 -19.06519 -17.18238 -16.72182 -15.94183 -15.67009 -15.50887 -15.25787 -15.03440 -14.64994 -14.19431 -13.97232 -13.74615 -13.60994 -13.48128 -12.78784 -12.61913 -12.42072 -11.86967 -11.77787 -11.59353 -11.30755 -11.26021 -10.95088 -10.83842 -10.65647 -10.38860 -10.05559 -10.01123 -9.65099 -8.76789 -8.73046 -8.55800 -8.32303 -8.13081 -6.83500 -5.73919 -2.96821 1.18739 1.49448 3.44326 3.46435 3.54447 3.56050 4.31167 4.56863 4.62497 4.78021 4.98569 5.02809 5.15545 5.37687 5.48057 5.50716 5.60141 5.87732 5.99724 6.06569 6.18537 6.21353 6.28436 6.30183 6.33314 6.34636 6.43287 6.50551 6.53154 6.61975 6.94052 7.04548 7.14992 7.20486 7.92967 8.16905 8.37102 9.08185 9.26972 9.90225 10.33448 11.38594 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.007607 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.211728 B = 3679.982001 C = 4658.258035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.040 3.960 4 C 0.146 3.854 5 N -0.573 5.573 6 C -0.219 4.219 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.909 5.909 10 Si 0.900 3.100 11 H -0.292 1.292 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.141 3.859 15 C 0.391 3.609 16 O -0.421 6.421 17 C -0.165 4.165 18 C -0.052 4.052 19 C -0.149 4.149 20 C -0.085 4.085 21 C -0.175 4.175 22 C 0.139 3.861 23 F -0.123 7.123 24 H 0.020 0.980 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.251 0.749 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 11.390 -2.336 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C -0.039 4.039 4 C 0.019 3.981 5 N -0.291 5.291 6 C -0.348 4.348 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.556 5.556 10 Si 0.730 3.270 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.208 1.208 14 C 0.013 3.987 15 C 0.262 3.738 16 O -0.292 6.292 17 C -0.168 4.168 18 C -0.071 4.071 19 C -0.167 4.167 20 C -0.103 4.103 21 C -0.194 4.194 22 C 0.119 3.881 23 F -0.101 7.101 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.323 10.839 -2.231 11.071 hybrid contribution -0.337 -0.817 -0.545 1.038 sum -0.661 10.022 -2.776 10.420 Atomic orbital electron populations 1.22525 0.83695 1.01254 0.98337 1.88046 1.17176 1.27274 1.94852 1.23483 0.97580 0.85071 0.97757 1.21013 0.90114 0.96497 0.90495 1.44093 1.75158 1.03410 1.06464 1.19234 1.40357 0.82050 0.93163 0.90370 1.24625 1.02163 0.97891 0.95646 1.69847 1.48245 1.39993 0.97510 0.86296 0.79777 0.84268 0.76614 1.21912 1.21881 1.20794 1.21088 0.95079 0.92858 0.89677 1.23339 0.92637 0.75169 0.82608 1.90406 1.32956 1.38760 1.67126 1.21605 0.92531 1.01981 1.00661 1.21373 0.96867 0.93520 0.95316 1.21099 0.98419 1.00954 0.96216 1.21011 0.91851 0.98343 0.99129 1.21053 0.99729 1.01495 0.97139 1.18085 0.81728 0.94425 0.93836 1.91549 1.44500 1.83957 1.90067 0.96140 0.94657 0.90979 0.96697 0.92967 0.92476 0.92862 0.93821 0.87267 0.94259 0.84473 0.85548 0.85555 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 11.01 101.05 1.11 1.87 16 2 O -0.36 -8.39 10.18 -35.23 -0.36 -8.75 16 3 C 0.04 0.86 5.67 37.15 0.21 1.07 16 4 C 0.15 3.04 6.14 -4.04 -0.02 3.02 16 5 N -0.57 -13.99 2.10 -174.61 -0.37 -14.36 16 6 C -0.22 -6.00 9.19 -15.06 -0.14 -6.14 16 7 H 0.08 2.18 7.93 -52.49 -0.42 1.77 16 8 C -0.01 -0.21 4.85 -17.43 -0.08 -0.30 16 9 N -0.91 -25.77 9.20 55.49 0.51 -25.26 16 10 Si 0.90 22.17 29.62 -169.99 -5.04 17.14 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.14 3.14 4.06 -5.20 -0.02 3.12 16 15 C 0.39 9.10 5.15 -30.77 -0.16 8.94 16 16 O -0.42 -11.28 12.34 5.56 0.07 -11.21 16 17 C -0.16 -3.25 5.88 -105.00 -0.62 -3.87 16 18 C -0.05 -0.82 9.47 -39.11 -0.37 -1.19 16 19 C -0.15 -1.90 10.02 -39.65 -0.40 -2.30 16 20 C -0.09 -1.06 10.03 -39.49 -0.40 -1.45 16 21 C -0.18 -2.60 10.01 -39.57 -0.40 -3.00 16 22 C 0.14 2.66 7.29 -38.86 -0.28 2.38 16 23 F -0.12 -2.66 15.55 2.25 0.04 -2.63 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 1.20 5.71 -51.93 -0.30 0.90 16 29 H 0.06 1.17 8.03 -51.93 -0.42 0.76 16 30 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.11 2.61 6.23 -51.93 -0.32 2.29 16 33 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 34 H 0.14 1.93 7.05 -52.49 -0.37 1.56 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -33.20 314.89 -6.70 -39.90 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.74 Total: -1.73 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.56 Total: 2.16 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.14 Total: -39.62 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.29 Total: -19.97 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.04 Total: 17.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.20 -6.70 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639669413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.227 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds