Wall clock time and date at job start Tue Mar 31 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99867 * 2 1 4 4 C 1.52993 * 109.47154 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47054 * 64.99903 * 4 3 2 6 6 C 1.36935 * 119.99698 * 269.99736 * 5 4 3 7 7 H 1.07994 * 120.00335 * 349.43229 * 6 5 4 8 8 C 1.38818 * 119.99441 * 169.42935 * 6 5 4 9 9 N 1.31615 * 120.00088 * 334.58696 * 8 6 5 10 10 Si 1.86796 * 119.99814 * 154.58933 * 8 6 5 11 11 H 1.48500 * 109.47116 * 89.99750 * 10 8 6 12 12 H 1.48493 * 109.47252 * 209.99641 * 10 8 6 13 13 H 1.48502 * 109.47218 * 330.00326 * 10 8 6 14 14 C 1.46500 * 120.00063 * 89.99870 * 5 4 3 15 15 C 1.50695 * 109.46949 * 272.50511 * 14 5 4 16 16 O 1.21276 * 120.00331 * 359.97438 * 15 14 5 17 17 C 1.46985 * 119.99642 * 179.97438 * 15 14 5 18 18 C 1.39955 * 120.19800 * 359.97438 * 17 15 14 19 19 C 1.37760 * 119.84902 * 180.02562 * 18 17 15 20 20 C 1.38515 * 120.25605 * 0.02755 * 19 18 17 21 21 C 1.38221 * 120.39877 * 359.97438 * 20 19 18 22 22 C 1.38278 * 120.14700 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.13136 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47309 * 300.00349 * 1 2 3 25 25 H 1.09000 * 109.47079 * 60.00380 * 1 2 3 26 26 H 1.08996 * 109.46913 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47039 * 59.99877 * 3 2 1 28 28 H 1.09002 * 109.46904 * 299.99983 * 3 2 1 29 29 H 1.09002 * 109.47334 * 305.00041 * 4 3 2 30 30 H 1.08997 * 109.47138 * 184.99796 * 4 3 2 31 31 H 0.97005 * 120.00183 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46978 * 152.50067 * 14 5 4 33 33 H 1.09004 * 109.46907 * 32.50018 * 14 5 4 34 34 H 1.07998 * 120.06905 * 0.30222 * 18 17 15 35 35 H 1.08006 * 119.87154 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.80440 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.93178 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0979 -0.7974 -1.3344 7 1 4.0360 -1.4008 -0.4409 8 6 4.3002 -1.4018 -2.5676 9 7 3.8937 -0.8046 -3.6678 10 14 5.1494 -3.0627 -2.6656 11 1 4.1343 -4.1433 -2.5810 12 1 5.8802 -3.1698 -3.9538 13 1 6.1085 -3.1954 -1.5397 14 6 4.2882 1.3998 -2.4131 15 6 3.0314 1.6434 -3.2080 16 8 1.9791 1.1655 -2.8404 17 6 3.0809 2.4602 -4.4290 18 6 4.2929 3.0141 -4.8568 19 6 4.3309 3.7789 -6.0019 20 6 3.1744 4.0021 -6.7309 21 6 1.9719 3.4601 -6.3180 22 6 1.9148 2.6890 -5.1716 23 9 0.7393 2.1590 -4.7686 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 4.0354 -1.2268 -4.5296 32 1 5.0218 0.8922 -3.0394 33 1 4.6956 2.3531 -2.0763 34 1 5.1970 2.8386 -4.2928 35 1 5.2661 4.2062 -6.3326 36 1 3.2126 4.6032 -7.6274 37 1 1.0749 3.6386 -6.8923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639669413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:27 Heat of formation + Delta-G solvation = -80.965081 kcal Electronic energy + Delta-G solvation = -22988.741501 eV Core-core repulsion = 19453.695893 eV Total energy + Delta-G solvation = -3535.045608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.80252 -40.40648 -39.08808 -38.32079 -36.66982 -33.40970 -32.59920 -31.28405 -30.40811 -28.56758 -27.15763 -25.33684 -24.48988 -23.32567 -22.15751 -20.67013 -18.68067 -18.44255 -17.41622 -17.21397 -17.09727 -16.95196 -16.55685 -16.39102 -15.76065 -15.50159 -15.34804 -15.28151 -15.03245 -14.50194 -14.07325 -13.94002 -13.53361 -13.20338 -13.08973 -12.96343 -12.74339 -12.60644 -12.58950 -12.19903 -12.11755 -11.92371 -11.79245 -11.58809 -10.61089 -10.32371 -10.01357 -9.90563 -9.59817 -8.75112 -7.80970 -5.04102 -0.09089 0.31801 1.47554 1.50551 1.59561 2.04575 2.59780 2.90922 3.15756 3.33584 3.39478 3.53785 3.78042 3.87175 4.15875 4.37058 4.38776 4.44184 4.47370 4.60311 4.64585 4.66803 4.69077 4.77547 4.86853 4.91605 5.09640 5.16429 5.28717 5.34390 5.38216 5.46265 5.52493 5.77805 6.00733 6.33101 6.58598 7.18972 7.42755 7.95489 8.32952 9.27910 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.007607 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.211728 B = 3679.982001 C = 4658.258035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.394 6.394 3 C 0.044 3.956 4 C 0.140 3.860 5 N -0.587 5.587 6 C -0.221 4.221 7 H 0.065 0.935 8 C -0.056 4.056 9 N -0.925 5.925 10 Si 0.955 3.045 11 H -0.306 1.306 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.140 3.860 15 C 0.389 3.611 16 O -0.472 6.472 17 C -0.204 4.204 18 C -0.055 4.055 19 C -0.134 4.134 20 C -0.065 4.065 21 C -0.173 4.173 22 C 0.098 3.902 23 F -0.152 7.152 24 H 0.055 0.945 25 H 0.016 0.984 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.241 0.759 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.176 0.824 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 13.604 -3.365 14.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.313 6.313 3 C -0.035 4.035 4 C 0.014 3.986 5 N -0.306 5.306 6 C -0.351 4.351 7 H 0.083 0.917 8 C -0.249 4.249 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.234 1.234 12 H -0.218 1.218 13 H -0.197 1.197 14 C 0.013 3.987 15 C 0.264 3.736 16 O -0.347 6.347 17 C -0.206 4.206 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.083 4.083 21 C -0.191 4.191 22 C 0.078 3.922 23 F -0.130 7.130 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.189 0.811 36 H 0.193 0.807 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.218 13.086 -3.245 13.537 hybrid contribution -0.797 -1.381 -0.253 1.615 sum 0.421 11.705 -3.498 12.223 Atomic orbital electron populations 1.22620 0.81989 1.02097 0.99012 1.87976 1.19297 1.28922 1.95075 1.23444 0.97613 0.84308 0.98145 1.21247 0.90195 0.98116 0.89010 1.44268 1.75488 1.02798 1.08085 1.19321 1.39533 0.83723 0.92572 0.91693 1.25220 1.03301 1.00748 0.95628 1.70045 1.49268 1.40820 0.97220 0.85443 0.78558 0.80702 0.76715 1.23405 1.21778 1.19670 1.21121 0.94620 0.93869 0.89053 1.23618 0.91942 0.74427 0.83569 1.90381 1.34429 1.41262 1.68661 1.21414 0.94641 1.04081 1.00513 1.21610 0.95600 0.93507 0.96642 1.21624 1.00456 0.98783 0.94257 1.21626 0.90302 0.96541 0.99796 1.21399 1.01993 1.00245 0.95504 1.18625 0.80856 0.96653 0.96020 1.91464 1.46029 1.84856 1.90696 0.92686 0.96550 0.90173 0.93279 0.95293 0.92465 0.89251 0.94903 0.89088 0.90412 0.83351 0.81092 0.80654 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 11.01 113.37 1.25 2.81 16 2 O -0.39 -18.94 10.18 -148.98 -1.52 -20.46 16 3 C 0.04 1.85 5.67 71.98 0.41 2.26 16 4 C 0.14 5.79 6.14 86.38 0.53 6.32 16 5 N -0.59 -29.02 2.10 -706.35 -1.48 -30.50 16 6 C -0.22 -12.39 9.19 84.04 0.77 -11.61 16 7 H 0.07 3.73 7.93 -2.91 -0.02 3.70 16 8 C -0.06 -3.15 4.85 84.86 0.41 -2.74 16 9 N -0.92 -54.15 9.20 21.65 0.20 -53.95 16 10 Si 0.96 46.71 29.62 68.60 2.03 48.74 16 11 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 14 C 0.14 6.32 4.06 85.63 0.35 6.67 16 15 C 0.39 18.68 5.15 27.98 0.14 18.83 16 16 O -0.47 -26.66 12.34 -3.02 -0.04 -26.69 16 17 C -0.20 -8.12 5.88 -20.11 -0.12 -8.23 16 18 C -0.06 -1.63 9.47 22.57 0.21 -1.42 16 19 C -0.13 -2.79 10.02 22.22 0.22 -2.57 16 20 C -0.07 -1.30 10.03 22.33 0.22 -1.08 16 21 C -0.17 -4.75 10.01 22.28 0.22 -4.53 16 22 C 0.10 3.81 7.29 22.74 0.17 3.98 16 23 F -0.15 -7.01 15.55 44.97 0.70 -6.31 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.03 1.37 5.71 -2.39 -0.01 1.36 16 29 H 0.06 2.32 8.03 -2.39 -0.02 2.31 16 30 H 0.09 2.97 7.92 -2.39 -0.02 2.95 16 31 H 0.24 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.09 4.43 6.23 -2.39 -0.01 4.42 16 33 H 0.08 2.81 7.87 -2.38 -0.02 2.79 16 34 H 0.15 3.88 7.05 -2.91 -0.02 3.86 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -77.31 314.89 5.76 -71.55 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.07 Total: 8.96 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 4.79 Total: 8.68 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -1.28 Total: -84.45 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.55 Total: -47.15 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.70 Total: -6.31 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -77.31 5.76 -71.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639669413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.418 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds