Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20818 * 120.00215 * 2 1 4 4 O 1.34228 * 120.00003 * 180.02562 * 2 1 3 5 5 C 1.45196 * 117.00276 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47283 * 59.99556 * 5 4 2 7 7 C 1.52996 * 109.46962 * 299.99803 * 5 4 2 8 8 C 1.50699 * 109.47339 * 179.97438 * 5 4 2 9 9 O 1.21304 * 120.00152 * 359.97438 * 8 5 4 10 10 N 1.34776 * 119.99798 * 180.27263 * 8 5 4 11 11 C 1.40595 * 119.99764 * 179.72414 * 10 8 5 12 12 C 1.40646 * 126.08311 * 359.69131 * 11 10 8 13 13 N 1.30914 * 108.38784 * 179.87895 * 12 11 10 14 14 N 1.40065 * 108.40439 * 0.38138 * 13 12 11 15 15 C 1.37327 * 126.06489 * 179.73676 * 14 13 12 16 16 H 1.08003 * 119.99416 * 174.15969 * 15 14 13 17 17 C 1.38979 * 120.00372 * 354.16004 * 15 14 13 18 18 N 1.31300 * 119.99795 * 5.93274 * 17 15 14 19 19 Si 1.86793 * 120.00339 * 185.93961 * 17 15 14 20 20 H 1.48508 * 109.47464 * 94.97550 * 19 17 15 21 21 H 1.48497 * 109.47452 * 214.97875 * 19 17 15 22 22 H 1.48508 * 109.47127 * 334.97858 * 19 17 15 23 23 C 1.35686 * 126.08204 * 180.02562 * 11 10 8 24 24 H 1.09003 * 109.46854 * 239.99930 * 1 2 3 25 25 H 1.09003 * 109.46793 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46859 * 119.99828 * 1 2 3 27 27 H 1.08993 * 109.47524 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.46979 * 300.00677 * 6 5 4 29 29 H 1.09006 * 109.46897 * 59.99695 * 6 5 4 30 30 H 1.08998 * 109.47348 * 299.99863 * 7 5 4 31 31 H 1.09000 * 109.47273 * 60.00222 * 7 5 4 32 32 H 1.08999 * 109.47474 * 179.97438 * 7 5 4 33 33 H 0.97001 * 120.00137 * 359.73317 * 10 8 5 34 34 H 1.07998 * 125.80732 * 0.02562 * 12 11 10 35 35 H 0.96997 * 119.99732 * 180.02562 * 18 17 15 36 36 H 1.07995 * 126.24184 * 359.92839 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1782 -1.1625 -0.0005 5 6 3.6282 -1.0865 -0.0011 6 6 4.1003 -0.3398 1.2481 7 6 4.0992 -0.3394 -1.2503 8 6 4.2042 -2.4791 -0.0010 9 8 3.4652 -3.4411 0.0000 10 7 5.5403 -2.6557 0.0041 11 6 6.0776 -3.9549 0.0101 12 6 5.3439 -5.1547 0.0175 13 7 6.1882 -6.1552 0.0188 14 7 7.4891 -5.6359 0.0211 15 6 8.6514 -6.3672 0.0281 16 1 9.6043 -5.8675 -0.0659 17 6 8.6017 -7.7502 0.1561 18 7 7.4434 -8.3684 0.1531 19 14 10.1826 -8.7294 0.3325 20 1 10.4636 -8.9607 1.7722 21 1 10.0359 -10.0352 -0.3593 22 1 11.3052 -7.9706 -0.2753 23 6 7.3964 -4.2742 0.0161 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 5.1887 -0.2832 1.2480 28 1 3.6836 0.6675 1.2485 29 1 3.7646 -0.8721 2.1382 30 1 3.7629 -0.8713 -2.1403 31 1 3.6827 0.6679 -1.2500 32 1 5.1877 -0.2819 -1.2506 33 1 6.1312 -1.8864 0.0038 34 1 4.2670 -5.2368 0.0193 35 1 7.4086 -9.3336 0.2428 36 1 8.2219 -3.5779 0.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779751615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -32.894808 kcal Electronic energy + Delta-G solvation = -21879.084042 eV Core-core repulsion = 18366.042880 eV Total energy + Delta-G solvation = -3513.041163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10594 -39.85071 -38.64031 -36.52072 -34.42524 -33.64638 -32.76738 -30.28887 -30.08934 -27.72877 -27.59050 -25.09774 -23.98455 -21.60917 -20.82337 -19.77742 -19.30757 -17.60782 -17.29958 -17.15035 -16.31435 -15.60222 -15.40261 -15.12751 -14.92410 -14.23367 -13.85210 -13.65636 -13.64356 -13.06978 -12.95709 -12.87691 -12.73158 -12.53424 -12.18171 -11.80867 -11.69369 -11.58301 -11.41232 -11.28465 -10.94733 -10.67591 -10.53589 -10.42170 -10.18739 -9.19225 -9.08555 -8.81880 -8.07573 -6.73717 -6.57491 -4.24623 2.04575 2.37866 2.74974 3.00526 3.04636 3.09946 3.58476 3.64775 3.85929 4.37466 4.42339 4.58339 4.63911 4.79480 4.96429 5.00063 5.05580 5.07882 5.36329 5.39277 5.53711 5.60664 5.68119 5.99784 6.03151 6.21963 6.34382 6.44587 6.85810 6.93460 7.07260 7.21363 7.64578 7.84486 8.11413 8.24380 8.59156 8.78411 9.36135 9.64938 10.38773 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.053021 B = 0.003360 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.961221 B = 8330.246690 C = 8662.608261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.461 3.539 3 O -0.514 6.514 4 O -0.324 6.324 5 C 0.112 3.888 6 C -0.180 4.180 7 C -0.180 4.180 8 C 0.511 3.489 9 O -0.514 6.514 10 N -0.616 5.616 11 C -0.061 4.061 12 C -0.032 4.032 13 N -0.260 5.260 14 N -0.142 5.142 15 C -0.324 4.324 16 H 0.117 0.883 17 C 0.047 3.953 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.081 4.081 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.397 0.603 34 H 0.176 0.824 35 H 0.275 0.725 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 15.174 -0.034 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.306 3.694 3 O -0.403 6.403 4 O -0.240 6.240 5 C 0.072 3.928 6 C -0.237 4.237 7 C -0.237 4.237 8 C 0.294 3.706 9 O -0.389 6.389 10 N -0.259 5.259 11 C -0.166 4.166 12 C -0.207 4.207 13 N -0.091 5.091 14 N 0.091 4.909 15 C -0.456 4.456 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.232 4.232 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.193 0.807 35 H 0.086 0.914 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.897 13.245 -0.027 14.933 hybrid contribution 1.061 0.983 0.076 1.448 sum -5.836 14.228 0.049 15.378 Atomic orbital electron populations 1.21657 0.87133 1.05665 1.06008 1.23830 0.92151 0.81585 0.71880 1.90584 1.70509 1.33418 1.45831 1.86625 1.20136 1.34117 1.83132 1.21948 0.77900 0.94677 0.98253 1.22489 1.02879 1.02380 0.95989 1.22485 1.02885 1.02377 0.95987 1.19539 0.82570 0.89177 0.79272 1.90630 1.58711 1.41009 1.48543 1.42302 1.05206 1.06980 1.71447 1.17234 0.91622 0.83587 1.24145 1.24116 1.00168 0.88611 1.07849 1.78262 0.85731 1.19465 1.25676 1.44556 1.05418 1.01921 1.39046 1.19884 0.83130 0.89700 1.52897 0.86574 1.25647 0.98828 0.97127 0.95476 1.70226 1.24335 1.09962 1.34986 0.85808 0.80265 0.79082 0.78969 1.19636 1.20094 1.18783 1.21239 0.95271 0.86858 1.19870 0.88118 0.88121 0.88112 0.90308 0.88962 0.91199 0.91195 0.88968 0.90311 0.76967 0.80727 0.91442 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.43 36.01 0.38 -0.66 16 2 C 0.46 5.38 7.38 36.01 0.27 5.65 16 3 O -0.51 -6.71 12.59 -18.74 -0.24 -6.95 16 4 O -0.32 -4.72 9.42 -45.90 -0.43 -5.15 16 5 C 0.11 1.60 0.97 -91.77 -0.09 1.51 16 6 C -0.18 -2.16 8.26 37.16 0.31 -1.86 16 7 C -0.18 -2.16 8.27 37.16 0.31 -1.85 16 8 C 0.51 9.33 6.53 -10.99 -0.07 9.25 16 9 O -0.51 -11.54 13.65 -14.12 -0.19 -11.73 16 10 N -0.62 -10.99 5.25 -10.00 -0.05 -11.04 16 11 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 12 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 13 N -0.26 -7.59 10.42 30.80 0.32 -7.27 16 14 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 15 C -0.32 -8.54 10.24 -14.82 -0.15 -8.69 16 16 H 0.12 2.73 7.84 -52.48 -0.41 2.32 16 17 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 18 N -0.77 -21.46 11.84 55.49 0.66 -20.81 16 19 Si 0.93 18.86 29.55 -169.99 -5.02 13.83 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.79 7.55 -51.93 -0.39 0.40 16 28 H 0.09 1.09 5.89 -51.93 -0.31 0.78 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.09 5.89 -51.93 -0.31 0.78 16 32 H 0.08 0.79 7.58 -51.93 -0.39 0.40 16 33 H 0.40 5.45 7.66 -40.82 -0.31 5.14 16 34 H 0.18 4.63 5.92 -52.49 -0.31 4.31 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.15 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 309.98 15.07 4.67 4.67 Total: -1.00 -34.70 309.98 -4.54 -39.24 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.10 Total: 9.77 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.10 Total: -0.64 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.88 Total: -43.05 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.86 Total: -23.82 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.70 -4.54 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779751615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.345 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds