Wall clock time and date at job start Tue Mar 31 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47095 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47274 * 29.99955 * 3 2 1 6 6 H 1.48499 * 109.47223 * 150.00252 * 3 2 1 7 7 C 1.37876 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46943 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46943 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47028 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99904 * 179.97438 * 13 12 11 16 16 N 1.40098 * 120.00078 * 179.97438 * 15 13 12 17 17 C 1.39178 * 120.00046 * 179.97438 * 16 15 13 18 18 C 1.39568 * 120.85325 * 359.97438 * 17 16 15 19 19 C 1.37794 * 119.12967 * 180.02562 * 18 17 16 20 20 N 1.32056 * 120.87803 * 359.97438 * 19 18 17 21 21 C 1.32160 * 121.87145 * 359.70311 * 20 19 18 22 22 F 1.35100 * 119.61060 * 180.31437 * 21 20 19 23 23 C 1.38242 * 120.77641 * 0.59035 * 21 20 19 24 24 H 0.97006 * 119.99999 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46968 * 59.99886 * 9 7 2 26 26 H 1.08998 * 109.46961 * 299.99927 * 9 7 2 27 27 H 1.08999 * 109.46551 * 60.00254 * 10 9 7 28 28 H 1.08999 * 109.46854 * 300.00150 * 10 9 7 29 29 H 1.08997 * 109.47562 * 60.00055 * 11 10 9 30 30 H 1.08999 * 109.47533 * 299.99814 * 11 10 9 31 31 H 1.08991 * 109.47474 * 60.00159 * 12 11 10 32 32 H 1.08998 * 109.46974 * 299.99733 * 12 11 10 33 33 H 0.96997 * 120.00495 * 359.97438 * 15 13 12 34 34 H 0.97007 * 120.00045 * 0.02562 * 16 15 13 35 35 H 1.08000 * 120.43292 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.56475 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.48021 * 179.70596 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 6 2.4746 -6.1499 -0.0018 13 6 1.7210 -7.4551 -0.0018 14 8 0.5082 -7.4551 -0.0018 15 7 2.3949 -8.6222 -0.0029 16 7 1.6944 -9.8355 -0.0023 17 6 2.3904 -11.0408 -0.0039 18 6 3.7859 -11.0616 -0.0066 19 6 4.4387 -12.2751 -0.0087 20 7 3.7616 -13.4089 -0.0077 21 6 2.4402 -13.4326 0.0012 22 9 1.7939 -14.6189 0.0083 23 6 1.7116 -12.2578 -0.0024 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8527 -5.0447 -0.8904 30 1 0.8546 -5.0450 0.8895 31 1 3.1018 -6.0922 0.8876 32 1 3.1005 -6.0923 -0.8923 33 1 3.3649 -8.6223 -0.0040 34 1 0.7244 -9.8356 -0.0016 35 1 4.3467 -10.1387 -0.0079 36 1 5.5184 -12.2994 -0.0112 37 1 0.6319 -12.2827 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807216296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:02 Heat of formation + Delta-G solvation = -49.577857 kcal Electronic energy + Delta-G solvation = -20054.662829 eV Core-core repulsion = 16553.271024 eV Total energy + Delta-G solvation = -3501.391804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.05529 -41.48898 -40.62588 -37.66088 -36.56838 -34.64481 -34.03599 -31.86464 -31.67958 -30.10337 -27.35989 -25.02402 -24.50286 -23.51593 -22.07366 -21.56169 -19.84222 -19.04380 -18.39091 -17.96343 -17.42616 -17.13501 -16.97929 -16.90783 -16.50033 -16.25512 -15.73291 -15.28112 -14.90739 -14.66633 -14.55707 -14.49446 -13.86116 -13.61310 -13.29261 -13.23654 -13.04029 -12.81071 -12.34329 -12.15369 -12.12341 -11.40355 -11.35072 -11.22789 -11.07982 -10.96801 -10.73096 -10.53516 -10.09377 -8.77191 -8.17685 -6.29345 -0.05528 0.24809 0.69190 1.41773 1.43433 1.48798 1.54431 2.42695 2.64084 2.65161 2.93287 3.15414 3.60901 3.63468 3.84976 3.98272 4.02776 4.17298 4.34546 4.61707 4.69669 4.71041 4.75055 4.85581 4.86525 4.89084 5.20983 5.32583 5.37667 5.42875 5.59643 5.67283 5.81242 5.90756 6.09883 6.26977 6.46891 6.76915 6.89980 7.17500 7.40385 8.94334 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.061612 B = 0.002074 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.344722 B =13494.132171 C =13917.418914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.096 4.096 11 C -0.098 4.098 12 C -0.115 4.115 13 C 0.515 3.485 14 O -0.581 6.581 15 N -0.512 5.512 16 N -0.529 5.529 17 C 0.274 3.726 18 C -0.256 4.256 19 C 0.179 3.821 20 N -0.583 5.583 21 C 0.332 3.668 22 F -0.122 7.122 23 C -0.270 4.270 24 H 0.262 0.738 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.441 0.559 34 H 0.436 0.564 35 H 0.169 0.831 36 H 0.202 0.798 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.853 -24.493 -0.003 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.021 4.021 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.156 4.156 13 C 0.304 3.696 14 O -0.459 6.459 15 N -0.262 5.262 16 N -0.252 5.252 17 C 0.160 3.840 18 C -0.282 4.282 19 C 0.024 3.976 20 N -0.302 5.302 21 C 0.179 3.821 22 F -0.101 7.101 23 C -0.299 4.299 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.287 0.713 34 H 0.279 0.721 35 H 0.187 0.813 36 H 0.219 0.781 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.357 -25.011 -0.003 27.469 hybrid contribution -1.095 1.355 -0.009 1.742 sum 10.262 -23.657 -0.012 25.787 Atomic orbital electron populations 1.70133 1.08042 1.27667 1.52039 1.26092 0.95774 1.03738 0.94957 0.85404 0.78721 0.78192 0.78459 1.19812 1.21191 1.18215 1.21774 0.93812 0.92205 1.49926 0.91416 1.19080 0.94795 0.93893 0.94315 1.21444 0.97782 0.92463 1.01661 1.21272 0.97546 0.93493 1.01317 1.21651 0.98876 0.87105 1.07960 1.21621 0.88226 0.84924 0.74875 1.90749 1.16190 1.87577 1.51353 1.45005 1.09074 0.95630 1.76485 1.43372 1.07196 0.94288 1.80326 1.17754 0.92256 0.83637 0.90368 1.21827 0.91673 1.01953 1.12737 1.22809 1.01368 0.84563 0.88863 1.67125 1.07242 1.34196 1.21664 1.17860 0.87640 0.80451 0.96129 1.91596 1.79856 1.45456 1.93228 1.21037 1.02616 0.89658 1.16546 0.92947 0.99753 0.99731 0.91755 0.91733 0.93679 0.93682 0.85098 0.85102 0.71292 0.72086 0.81338 0.78147 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 0.85 4.97 29.85 0.15 1.00 16 10 C -0.10 -3.54 5.15 30.59 0.16 -3.38 16 11 C -0.10 -3.06 4.50 30.59 0.14 -2.92 16 12 C -0.12 -2.07 5.70 29.85 0.17 -1.90 16 13 C 0.51 10.70 7.95 87.66 0.70 11.40 16 14 O -0.58 -18.20 15.82 -3.04 -0.05 -18.25 16 15 N -0.51 -6.72 6.23 -173.53 -1.08 -7.80 16 16 N -0.53 -7.81 6.44 -51.01 -0.33 -8.14 16 17 C 0.27 3.64 6.77 38.56 0.26 3.90 16 18 C -0.26 -2.33 9.54 22.49 0.21 -2.12 16 19 C 0.18 1.92 11.17 84.55 0.94 2.86 16 20 N -0.58 -10.64 10.37 -197.25 -2.05 -12.68 16 21 C 0.33 6.22 8.40 84.64 0.71 6.93 16 22 F -0.12 -2.52 17.29 44.97 0.78 -1.75 16 23 C -0.27 -4.09 9.97 22.54 0.22 -3.87 16 24 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 25 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 26 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.44 2.30 6.69 -213.33 -1.43 0.87 16 34 H 0.44 7.29 8.03 -213.31 -1.71 5.58 16 35 H 0.17 0.37 6.33 -2.91 -0.02 0.35 16 36 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -78.06 327.23 1.91 -76.14 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.03 Total: 2.48 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 4.36 Total: -18.08 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.17 Total: -86.34 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -78.06 1.91 -76.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807216296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.564 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds