Wall clock time and date at job start Tue Mar 31 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.47049 * 2 1 4 4 C 1.46899 * 111.00158 * 299.84366 * 3 2 1 5 5 C 1.50699 * 109.46845 * 293.95447 * 4 3 2 6 6 H 1.07992 * 120.00263 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99791 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99755 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46864 * 89.99774 * 9 7 5 11 11 H 1.48495 * 109.47051 * 210.00159 * 9 7 5 12 12 H 1.48503 * 109.46830 * 330.00205 * 9 7 5 13 13 C 1.46898 * 110.99732 * 63.79663 * 3 2 1 14 14 C 1.50703 * 109.47218 * 69.90405 * 13 3 2 15 15 C 1.37973 * 120.04519 * 254.09771 * 14 13 3 16 16 C 1.38314 * 120.17155 * 179.74576 * 15 14 13 17 17 C 1.38595 * 120.27955 * 0.55615 * 16 15 14 18 18 F 1.35101 * 119.95180 * 179.72158 * 17 16 15 19 19 C 1.38158 * 120.09943 * 359.70333 * 17 16 15 20 20 C 1.39604 * 120.04880 * 74.37902 * 14 13 3 21 21 C 1.47733 * 120.13841 * 359.97438 * 20 14 13 22 22 O 1.21466 * 120.00183 * 0.02562 * 21 20 14 23 23 O 1.34712 * 119.99524 * 180.02562 * 21 20 14 24 24 H 1.08994 * 109.46905 * 300.43700 * 1 2 3 25 25 H 1.08996 * 109.47161 * 60.43769 * 1 2 3 26 26 H 1.09000 * 109.46909 * 180.43950 * 1 2 3 27 27 H 1.08994 * 109.46664 * 240.00155 * 2 1 3 28 28 H 1.08999 * 109.47115 * 120.00503 * 2 1 3 29 29 H 1.09003 * 109.47361 * 53.95152 * 4 3 2 30 30 H 1.08996 * 109.47438 * 173.95201 * 4 3 2 31 31 H 0.97006 * 120.00062 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47172 * 189.90367 * 13 3 2 33 33 H 1.09004 * 109.47156 * 309.89929 * 13 3 2 34 34 H 1.07993 * 119.91556 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.85727 * 180.25611 * 16 15 14 36 36 H 1.08005 * 120.09192 * 180.02562 * 19 17 16 37 37 H 0.96699 * 116.99560 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5518 2.1088 -1.1895 5 6 2.1771 1.5075 -2.4217 6 1 2.8547 0.6715 -2.3303 7 6 1.8850 2.0252 -3.6658 8 7 2.4303 1.5001 -4.7412 9 14 0.7135 3.4716 -3.8240 10 1 1.4812 4.7407 -3.7503 11 1 0.0064 3.3957 -5.1276 12 1 -0.2783 3.4283 -2.7195 13 6 1.6242 2.0831 1.2305 14 6 2.3930 1.5188 2.3974 15 6 1.7625 0.6939 3.3060 16 6 2.4668 0.1703 4.3751 17 6 3.8068 0.4794 4.5477 18 9 4.4870 -0.0312 5.5975 19 6 4.4481 1.3086 3.6478 20 6 3.7426 1.8348 2.5639 21 6 4.4214 2.7221 1.5973 22 8 3.8051 3.1788 0.6555 23 8 5.7239 3.0246 1.7604 24 1 -0.3633 0.5206 0.8860 25 1 -0.3633 0.5070 -0.8938 26 1 -0.3633 -1.0276 0.0079 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.4666 2.0318 -1.2583 30 1 1.8373 3.1579 -1.1122 31 1 2.2251 1.8646 -5.6164 32 1 1.8429 3.1463 1.1313 33 1 0.5560 1.9461 1.3987 34 1 0.7174 0.4527 3.1797 35 1 1.9692 -0.4782 5.0810 36 1 5.4925 1.5490 3.7822 37 1 6.1246 3.6088 1.1022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829697629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:49 Heat of formation + Delta-G solvation = -90.995915 kcal Electronic energy + Delta-G solvation = -22469.006282 eV Core-core repulsion = 18933.525705 eV Total energy + Delta-G solvation = -3535.480577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.99701 -40.40599 -38.63613 -37.04089 -35.70241 -32.57108 -31.62897 -31.41234 -29.53321 -27.51203 -25.27322 -24.25818 -22.91971 -22.15954 -20.86017 -19.21732 -18.17349 -17.44214 -16.70404 -16.47380 -15.85536 -15.75862 -15.39086 -15.26338 -14.87375 -14.71971 -14.09131 -13.88627 -13.45737 -13.18861 -12.92922 -12.57145 -12.33811 -12.15469 -11.75342 -11.61889 -11.50255 -11.34663 -11.15329 -10.95622 -10.53992 -10.40103 -10.08664 -9.83630 -9.71756 -9.25782 -9.19566 -8.68073 -8.48432 -7.21746 -5.97891 -3.92982 0.59881 1.04247 2.70496 3.16459 3.33402 3.39975 3.42038 3.62217 4.09004 4.48434 4.54951 4.72195 4.79326 4.97075 5.16807 5.35914 5.36076 5.56991 5.69932 5.78772 5.80536 5.85510 5.90833 6.00152 6.10068 6.13645 6.33930 6.47317 6.57660 6.66661 6.81240 6.85583 7.07671 7.14393 7.71836 7.98530 8.16022 8.23435 8.75049 9.10962 9.64841 11.15641 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.005330 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.449215 B = 5252.416789 C = 5923.737277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 N -0.504 5.504 4 C 0.165 3.835 5 C -0.497 4.497 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.078 3.922 14 C -0.012 4.012 15 C -0.100 4.100 16 C -0.122 4.122 17 C 0.076 3.924 18 F -0.140 7.140 19 C -0.102 4.102 20 C -0.073 4.073 21 C 0.511 3.489 22 O -0.451 6.451 23 O -0.524 6.524 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.051 0.949 29 H -0.009 1.009 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -0.071 18.912 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.073 4.073 3 N -0.227 5.227 4 C 0.040 3.960 5 C -0.536 4.536 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.545 5.545 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.050 4.050 14 C -0.013 4.013 15 C -0.119 4.119 16 C -0.141 4.141 17 C 0.056 3.944 18 F -0.119 7.119 19 C -0.121 4.121 20 C -0.075 4.075 21 C 0.352 3.648 22 O -0.335 6.335 23 O -0.338 6.338 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.055 0.945 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.731 -0.195 18.722 18.737 hybrid contribution -1.030 0.974 -0.431 1.482 sum -0.299 0.779 18.290 18.309 Atomic orbital electron populations 1.22395 0.99516 1.01121 1.01729 1.22077 0.91996 0.91506 1.01751 1.62112 1.58804 1.01229 1.00546 1.20175 0.93294 0.94456 0.88119 1.21002 1.26988 1.17142 0.88454 0.90444 1.24864 0.95996 0.96699 0.95816 1.69899 1.44511 1.41966 0.98074 0.86892 0.81838 0.83829 0.77348 1.20243 1.21442 1.19339 1.21271 0.94914 1.00113 0.88668 1.20207 0.92183 0.93594 0.95314 1.20917 1.00639 0.96792 0.93512 1.21323 0.92663 1.00769 0.99304 1.17489 0.90785 0.98849 0.87251 1.91502 1.79885 1.85576 1.54916 1.21396 1.01218 0.96240 0.93230 1.18685 0.93440 1.00330 0.94996 1.20566 0.80018 0.80010 0.84226 1.91052 1.64962 1.48808 1.28693 1.84480 1.26390 1.66313 1.56591 0.93799 0.91436 0.93182 0.89608 0.93007 0.99140 0.95328 0.92858 0.88518 0.94512 0.84303 0.84369 0.83458 0.72788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 9.26 37.16 0.34 -2.81 16 2 C 0.06 1.04 5.72 -3.82 -0.02 1.01 16 3 N -0.50 -10.43 3.55 -237.52 -0.84 -11.27 16 4 C 0.17 4.04 3.30 -4.98 -0.02 4.02 16 5 C -0.50 -14.24 9.07 -34.44 -0.31 -14.55 16 6 H 0.08 2.43 7.35 -52.49 -0.39 2.04 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 C 0.08 1.33 3.97 -4.98 -0.02 1.31 16 14 C -0.01 -0.17 4.60 -104.21 -0.48 -0.65 16 15 C -0.10 -1.15 9.10 -39.65 -0.36 -1.51 16 16 C -0.12 -1.27 10.02 -39.42 -0.39 -1.66 16 17 C 0.08 0.88 7.29 -39.48 -0.29 0.59 16 18 F -0.14 -1.64 17.26 2.25 0.04 -1.60 16 19 C -0.10 -1.26 9.60 -39.09 -0.38 -1.63 16 20 C -0.07 -1.05 5.87 -104.99 -0.62 -1.67 16 21 C 0.51 8.05 8.24 34.61 0.29 8.33 16 22 O -0.45 -8.79 12.85 -19.24 -0.25 -9.04 16 23 O -0.52 -6.48 12.68 -40.52 -0.51 -7.00 16 24 H 0.04 0.64 6.28 -51.93 -0.33 0.32 16 25 H 0.07 1.30 6.30 -51.93 -0.33 0.98 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.85 6.85 -51.93 -0.36 1.49 16 28 H 0.05 0.86 6.87 -51.93 -0.36 0.51 16 29 H -0.01 -0.22 5.07 -51.93 -0.26 -0.48 16 30 H 0.03 0.73 7.04 -51.93 -0.37 0.37 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 32 H 0.10 1.76 6.06 -51.93 -0.31 1.45 16 33 H 0.04 0.57 5.77 -51.93 -0.30 0.27 16 34 H 0.14 1.34 7.99 -52.49 -0.42 0.92 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.62 7.61 -52.48 -0.40 1.22 16 37 H 0.41 3.57 9.11 45.56 0.42 3.99 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -33.11 306.85 -6.60 -39.71 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.41 Total: 1.96 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.35 Total: -7.35 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.07 Total: -38.56 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.76 Total: -16.03 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.11 -6.60 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829697629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.286 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds