Wall clock time and date at job start Tue Mar 31 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.47049 * 2 1 4 4 C 1.46899 * 111.00158 * 299.84366 * 3 2 1 5 5 C 1.50699 * 109.46845 * 293.95447 * 4 3 2 6 6 H 1.07992 * 120.00263 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99791 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99755 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46864 * 89.99774 * 9 7 5 11 11 H 1.48495 * 109.47051 * 210.00159 * 9 7 5 12 12 H 1.48503 * 109.46830 * 330.00205 * 9 7 5 13 13 C 1.46898 * 110.99732 * 63.79663 * 3 2 1 14 14 C 1.50703 * 109.47218 * 69.90405 * 13 3 2 15 15 C 1.37973 * 120.04519 * 254.09771 * 14 13 3 16 16 C 1.38314 * 120.17155 * 179.74576 * 15 14 13 17 17 C 1.38595 * 120.27955 * 0.55615 * 16 15 14 18 18 F 1.35101 * 119.95180 * 179.72158 * 17 16 15 19 19 C 1.38158 * 120.09943 * 359.70333 * 17 16 15 20 20 C 1.39604 * 120.04880 * 74.37902 * 14 13 3 21 21 C 1.47733 * 120.13841 * 359.97438 * 20 14 13 22 22 O 1.21466 * 120.00183 * 0.02562 * 21 20 14 23 23 O 1.34712 * 119.99524 * 180.02562 * 21 20 14 24 24 H 1.08994 * 109.46905 * 300.43700 * 1 2 3 25 25 H 1.08996 * 109.47161 * 60.43769 * 1 2 3 26 26 H 1.09000 * 109.46909 * 180.43950 * 1 2 3 27 27 H 1.08994 * 109.46664 * 240.00155 * 2 1 3 28 28 H 1.08999 * 109.47115 * 120.00503 * 2 1 3 29 29 H 1.09003 * 109.47361 * 53.95152 * 4 3 2 30 30 H 1.08996 * 109.47438 * 173.95201 * 4 3 2 31 31 H 0.97006 * 120.00062 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47172 * 189.90367 * 13 3 2 33 33 H 1.09004 * 109.47156 * 309.89929 * 13 3 2 34 34 H 1.07993 * 119.91556 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.85727 * 180.25611 * 16 15 14 36 36 H 1.08005 * 120.09192 * 180.02562 * 19 17 16 37 37 H 0.96699 * 116.99560 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5518 2.1088 -1.1895 5 6 2.1771 1.5075 -2.4217 6 1 2.8547 0.6715 -2.3303 7 6 1.8850 2.0252 -3.6658 8 7 2.4303 1.5001 -4.7412 9 14 0.7135 3.4716 -3.8240 10 1 1.4812 4.7407 -3.7503 11 1 0.0064 3.3957 -5.1276 12 1 -0.2783 3.4283 -2.7195 13 6 1.6242 2.0831 1.2305 14 6 2.3930 1.5188 2.3974 15 6 1.7625 0.6939 3.3060 16 6 2.4668 0.1703 4.3751 17 6 3.8068 0.4794 4.5477 18 9 4.4870 -0.0312 5.5975 19 6 4.4481 1.3086 3.6478 20 6 3.7426 1.8348 2.5639 21 6 4.4214 2.7221 1.5973 22 8 3.8051 3.1788 0.6555 23 8 5.7239 3.0246 1.7604 24 1 -0.3633 0.5206 0.8860 25 1 -0.3633 0.5070 -0.8938 26 1 -0.3633 -1.0276 0.0079 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.4666 2.0318 -1.2583 30 1 1.8373 3.1579 -1.1122 31 1 2.2251 1.8646 -5.6164 32 1 1.8429 3.1463 1.1313 33 1 0.5560 1.9461 1.3987 34 1 0.7174 0.4527 3.1797 35 1 1.9692 -0.4782 5.0810 36 1 5.4925 1.5490 3.7822 37 1 6.1246 3.6088 1.1022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829697629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:49 Heat of formation + Delta-G solvation = -113.911279 kcal Electronic energy + Delta-G solvation = -22469.999967 eV Core-core repulsion = 18933.525705 eV Total energy + Delta-G solvation = -3536.474262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.90392 -41.54277 -39.77859 -38.46609 -36.90188 -34.70314 -32.66838 -32.55256 -31.17438 -29.17015 -26.58713 -25.40013 -24.59091 -23.34140 -22.06558 -20.76531 -19.21483 -18.85784 -18.53956 -17.52070 -16.96585 -16.75938 -16.60265 -16.45620 -16.30635 -16.17555 -15.95461 -14.88909 -14.70507 -14.51458 -14.34083 -14.12059 -13.77290 -13.41281 -13.24153 -12.99969 -12.83285 -12.60788 -12.50844 -12.43400 -12.28639 -12.02517 -11.82904 -11.56045 -11.35487 -11.04640 -10.73558 -10.19164 -9.68783 -8.79214 -8.24928 -6.25149 -0.39489 0.09194 1.33348 1.35038 1.45160 1.61859 2.13604 2.35933 2.57817 3.09434 3.16548 3.43436 3.67009 3.76100 3.93115 4.11903 4.29357 4.38692 4.43972 4.53650 4.65561 4.68624 4.77693 4.86345 4.92864 4.96454 5.03301 5.09124 5.16641 5.33841 5.43757 5.49093 5.63760 5.73615 5.77348 6.05384 6.53862 6.74502 6.80315 7.12573 7.37283 8.92189 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.005330 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.449215 B = 5252.416789 C = 5923.737277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.522 5.522 4 C 0.182 3.818 5 C -0.500 4.500 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.249 1.249 13 C 0.084 3.916 14 C -0.028 4.028 15 C -0.091 4.091 16 C -0.104 4.104 17 C 0.075 3.925 18 F -0.139 7.139 19 C -0.100 4.100 20 C -0.094 4.094 21 C 0.511 3.489 22 O -0.500 6.500 23 O -0.515 6.515 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.078 0.922 29 H -0.004 1.004 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.174 0.826 36 H 0.156 0.844 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -0.217 21.825 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.070 4.070 3 N -0.245 5.245 4 C 0.055 3.945 5 C -0.538 4.538 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.594 5.594 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.173 1.173 13 C -0.043 4.043 14 C -0.030 4.030 15 C -0.110 4.110 16 C -0.122 4.122 17 C 0.056 3.944 18 F -0.118 7.118 19 C -0.119 4.119 20 C -0.096 4.096 21 C 0.354 3.646 22 O -0.388 6.388 23 O -0.329 6.329 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.013 0.987 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.183 0.817 35 H 0.191 0.809 36 H 0.174 0.826 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -0.873 -0.348 21.678 21.698 hybrid contribution -0.365 0.922 -1.217 1.569 sum -1.237 0.573 20.461 20.506 Atomic orbital electron populations 1.22295 0.97446 1.02628 1.01504 1.22002 0.93701 0.90335 1.00953 1.61894 1.59827 1.01962 1.00823 1.19813 0.92888 0.93648 0.88184 1.21224 1.26055 1.15845 0.90699 0.94953 1.25772 0.97998 0.99863 0.95322 1.70056 1.46567 1.43996 0.98776 0.85779 0.79791 0.79678 0.78063 1.19777 1.20673 1.17293 1.21169 0.96353 0.99008 0.87771 1.20102 0.92180 0.95251 0.95430 1.21152 1.01778 0.95366 0.92676 1.21661 0.91870 0.99749 0.98958 1.17610 0.91407 0.98473 0.86941 1.91514 1.80014 1.85468 1.54774 1.21434 1.01624 0.96103 0.92720 1.18721 0.93894 1.01245 0.95692 1.20977 0.80459 0.79380 0.83763 1.91034 1.66075 1.50904 1.30762 1.84450 1.25089 1.66384 1.56991 0.90955 0.94469 0.90920 0.93785 0.90366 0.98650 0.96593 0.92677 0.90320 0.92538 0.81654 0.80876 0.82638 0.71094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.64 9.26 71.98 0.67 -4.97 16 2 C 0.06 2.16 5.72 86.31 0.49 2.65 16 3 N -0.52 -21.73 3.55 -905.37 -3.21 -24.95 16 4 C 0.18 9.01 3.30 85.56 0.28 9.30 16 5 C -0.50 -29.87 9.07 25.60 0.23 -29.64 16 6 H 0.03 2.17 7.35 -2.91 -0.02 2.14 16 7 C 0.01 0.41 5.47 84.66 0.46 0.87 16 8 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 9 Si 0.94 45.88 27.47 68.60 1.88 47.76 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 13 C 0.08 2.76 3.97 85.56 0.34 3.10 16 14 C -0.03 -0.76 4.60 -19.60 -0.09 -0.85 16 15 C -0.09 -1.72 9.10 22.22 0.20 -1.52 16 16 C -0.10 -1.68 10.02 22.37 0.22 -1.46 16 17 C 0.08 1.49 7.29 22.34 0.16 1.66 16 18 F -0.14 -2.81 17.26 44.97 0.78 -2.03 16 19 C -0.10 -2.27 9.60 22.59 0.22 -2.05 16 20 C -0.09 -2.60 5.87 -20.10 -0.12 -2.72 16 21 C 0.51 16.28 8.24 70.33 0.58 16.86 16 22 O -0.50 -20.16 12.85 19.94 0.26 -19.91 16 23 O -0.51 -12.66 12.68 -56.22 -0.71 -13.37 16 24 H 0.07 1.84 6.28 -2.39 -0.01 1.82 16 25 H 0.04 1.38 6.30 -2.39 -0.02 1.37 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.98 6.85 -2.39 -0.02 1.96 16 28 H 0.08 2.46 6.87 -2.39 -0.02 2.45 16 29 H 0.00 -0.19 5.07 -2.39 -0.01 -0.20 16 30 H 0.02 0.83 7.04 -2.39 -0.02 0.82 16 31 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 32 H 0.08 2.88 6.06 -2.39 -0.01 2.86 16 33 H 0.06 1.60 5.77 -2.39 -0.01 1.58 16 34 H 0.17 2.24 7.99 -2.91 -0.02 2.22 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.16 3.16 7.61 -2.91 -0.02 3.14 16 37 H 0.43 7.45 9.11 -74.06 -0.67 6.77 16 Total: -1.00 -75.43 306.85 3.33 -72.09 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.39 Total: 10.14 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 3.66 Total: -8.77 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.91 Total: -85.91 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.46 Total: -33.28 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -75.43 3.33 -72.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829697629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.819 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds