Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39158 * 119.99963 * 2 1 4 4 C 1.39156 * 119.93027 * 359.97438 * 3 2 1 5 5 C 1.37617 * 120.10313 * 179.97438 * 4 3 2 6 6 C 1.39844 * 119.96194 * 359.97438 * 5 4 3 7 7 C 1.47388 * 120.06490 * 180.02562 * 6 5 4 8 8 O 1.21513 * 120.00159 * 359.97438 * 7 6 5 9 9 O 1.34767 * 119.99233 * 179.97438 * 7 6 5 10 10 C 1.45202 * 116.99269 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00258 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99506 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00308 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47155 * 59.99584 * 17 15 13 19 19 H 1.48503 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46879 * 299.99587 * 17 15 13 21 21 C 1.39863 * 119.86613 * 0.27343 * 6 5 4 22 22 C 1.37774 * 119.89338 * 359.47144 * 21 6 5 23 23 F 1.35096 * 119.98251 * 180.25594 * 22 21 6 24 24 H 1.08997 * 109.47125 * 299.99703 * 1 2 3 25 25 H 1.08998 * 109.46848 * 60.00152 * 1 2 3 26 26 H 1.08997 * 109.46850 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99827 * 180.02562 * 2 1 3 28 28 H 1.07999 * 119.95034 * 359.97438 * 4 3 2 29 29 H 1.08005 * 120.02262 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.46860 * 60.00375 * 10 9 7 31 31 H 1.08993 * 109.47426 * 299.99737 * 10 9 7 32 32 H 1.09001 * 109.46801 * 300.00397 * 11 10 9 33 33 H 1.09001 * 109.46998 * 59.99993 * 11 10 9 34 34 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 35 35 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 36 36 H 0.96999 * 119.99910 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.05852 * 179.70081 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1608 1.2052 0.0000 4 6 1.4636 2.4094 -0.0005 5 6 2.1480 3.6033 0.0000 6 6 3.5465 3.6066 0.0016 7 6 4.2819 4.8839 0.0028 8 8 3.6730 5.9355 0.0018 9 8 5.6295 4.8854 0.0048 10 6 6.2872 6.1800 0.0053 11 6 7.8043 5.9813 0.0084 12 6 8.4972 7.3453 0.0095 13 6 9.9914 7.1496 0.0119 14 1 10.4054 6.1521 0.0130 15 6 10.8301 8.2440 0.0138 16 7 10.3260 9.4587 0.0130 17 14 12.6823 8.0014 0.0175 18 1 13.0847 7.2431 -1.1943 19 1 13.3549 9.3253 0.0184 20 1 13.0797 7.2429 1.2307 21 6 4.2458 2.3954 -0.0031 22 6 3.5548 1.2035 0.0017 23 9 4.2285 0.0325 0.0024 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9500 -0.8400 -0.0004 28 1 0.3836 2.4072 -0.0014 29 1 1.6056 4.5372 -0.0008 30 1 5.9922 6.7369 0.8946 31 1 5.9951 6.7362 -0.8853 32 1 8.0960 5.4251 0.8993 33 1 8.0995 5.4240 -0.8807 34 1 8.2055 7.9018 -0.8812 35 1 8.2019 7.9021 0.8988 36 1 10.9159 10.2286 0.0139 37 1 5.3258 2.3943 -0.0067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850151641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = -118.875064 kcal Electronic energy + Delta-G solvation = -20548.537797 eV Core-core repulsion = 17011.848289 eV Total energy + Delta-G solvation = -3536.689508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.04979 -40.38675 -39.17479 -36.49825 -35.83976 -33.94806 -31.73614 -30.96116 -30.43783 -27.29984 -26.60661 -24.03590 -22.79664 -22.73276 -20.76244 -20.28983 -18.63114 -17.45379 -17.34878 -16.55493 -16.28896 -16.24839 -15.88152 -15.64169 -14.98948 -14.59710 -14.45739 -14.43200 -14.01325 -13.66322 -13.35786 -12.72948 -12.61548 -12.34923 -12.11575 -12.04152 -11.81881 -11.68891 -10.93123 -10.67334 -10.65794 -10.59861 -10.35868 -10.33249 -9.67886 -9.48030 -9.22290 -9.14955 -8.35989 -7.93599 -6.00995 -4.03927 0.57611 0.92820 2.53609 2.81324 2.93816 3.34481 3.38588 3.41388 3.51928 3.88314 4.37380 4.45637 4.56915 4.67690 4.90788 4.92359 5.00540 5.16364 5.23015 5.34824 5.54028 5.63225 5.66612 5.71749 5.76512 6.02430 6.09660 6.25189 6.54527 6.58201 6.68491 6.88097 7.02108 7.04427 7.63083 7.74602 7.97056 7.99285 8.38757 9.02137 9.60099 11.10430 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.002647 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.660208 B =10574.753846 C =11326.360379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.741 5.741 3 C 0.218 3.782 4 C -0.190 4.190 5 C -0.012 4.012 6 C -0.156 4.156 7 C 0.509 3.491 8 O -0.514 6.514 9 O -0.355 6.355 10 C 0.069 3.931 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.044 4.044 22 C 0.004 3.996 23 F -0.140 7.140 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.407 0.593 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.545 -19.608 -0.039 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.368 5.368 3 C 0.111 3.889 4 C -0.213 4.213 5 C -0.031 4.031 6 C -0.160 4.160 7 C 0.354 3.646 8 O -0.404 6.404 9 O -0.271 6.271 10 C -0.003 4.003 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.064 4.064 22 C -0.019 4.019 23 F -0.119 7.119 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.242 0.758 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.838 -19.121 -0.039 29.026 hybrid contribution 1.305 -0.430 0.001 1.373 sum -20.533 -19.551 -0.038 28.352 Atomic orbital electron populations 1.21662 0.79180 1.03019 1.01726 1.44372 1.06413 1.05379 1.80653 1.18054 0.89447 0.87892 0.93537 1.20440 1.00188 0.89564 1.11099 1.21087 0.92094 0.98615 0.91273 1.18760 0.93096 0.90480 1.13630 1.20852 0.81712 0.88967 0.73025 1.90826 1.69568 1.33487 1.46499 1.86543 1.19580 1.37660 1.83367 1.23515 0.94089 0.80488 1.02245 1.21770 0.88738 1.02203 1.01977 1.19046 0.94848 0.89713 0.97694 1.21139 0.91101 0.92688 1.51043 0.92485 1.25034 0.99016 0.95220 0.95230 1.69957 1.35212 0.97710 1.50505 0.86603 0.85203 0.77210 0.78659 1.20191 1.21286 1.20187 1.21303 1.01673 0.89606 0.93775 1.16925 0.87817 0.82036 1.15142 1.91465 1.79981 1.45420 1.95024 0.92279 0.92289 0.90371 0.75811 0.84269 0.83798 0.91424 0.91418 0.92128 0.92125 0.96216 0.96215 0.92852 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 9.93 59.85 0.59 0.91 16 2 N -0.74 -4.74 5.87 -65.34 -0.38 -5.12 16 3 C 0.22 1.94 6.66 -83.76 -0.56 1.39 16 4 C -0.19 -1.59 9.28 -39.47 -0.37 -1.96 16 5 C -0.01 -0.12 9.58 -39.21 -0.38 -0.50 16 6 C -0.16 -2.00 5.88 -104.96 -0.62 -2.62 16 7 C 0.51 8.24 7.89 34.45 0.27 8.52 16 8 O -0.51 -9.45 16.13 -19.27 -0.31 -9.76 16 9 O -0.35 -6.14 9.46 -40.67 -0.38 -6.52 16 10 C 0.07 1.31 5.48 37.16 0.20 1.52 16 11 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 12 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 13 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.04 -0.52 9.58 -39.14 -0.37 -0.89 16 22 C 0.00 0.05 7.30 -39.32 -0.29 -0.24 16 23 F -0.14 -1.53 16.62 2.25 0.04 -1.49 16 24 H 0.06 0.19 7.94 -51.93 -0.41 -0.22 16 25 H 0.06 0.19 7.93 -51.93 -0.41 -0.22 16 26 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.41 2.30 8.29 -40.82 -0.34 1.96 16 28 H 0.14 0.80 6.70 -52.49 -0.35 0.45 16 29 H 0.14 1.41 7.64 -52.48 -0.40 1.01 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.15 1.78 7.60 -52.49 -0.40 1.38 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -32.47 327.98 -7.40 -39.88 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.81 Total: -2.91 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.21 Total: -9.44 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.35 Total: -31.42 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.70 Total: -16.28 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.47 -7.40 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850151641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.999 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds