Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47007 * 2 1 4 4 C 1.36866 * 120.00478 * 278.28277 * 3 2 1 5 5 H 1.07998 * 120.00122 * 178.63786 * 4 3 2 6 6 C 1.39047 * 119.99733 * 358.64307 * 4 3 2 7 7 N 1.31356 * 120.00275 * 12.70253 * 6 4 3 8 8 Si 1.86807 * 119.99949 * 192.70675 * 6 4 3 9 9 H 1.48498 * 109.46839 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46824 * 119.99368 * 8 6 4 11 11 H 1.48491 * 109.47080 * 239.99891 * 8 6 4 12 12 C 1.34781 * 119.99569 * 98.28459 * 3 2 1 13 13 O 1.21588 * 119.99841 * 186.00414 * 12 3 2 14 14 C 1.47734 * 119.99968 * 6.00361 * 12 3 2 15 15 C 1.39666 * 120.13844 * 315.28814 * 14 12 3 16 16 C 1.37929 * 119.89434 * 180.02562 * 15 14 12 17 17 C 1.38358 * 120.18041 * 359.74473 * 16 15 14 18 18 C 1.50699 * 119.85914 * 180.25597 * 17 16 15 19 19 O 1.42906 * 109.46950 * 0.25731 * 18 17 16 20 20 C 1.42903 * 113.99775 * 180.02562 * 19 18 17 21 21 C 1.38564 * 120.28210 * 0.51431 * 17 16 15 22 22 F 1.35105 * 119.95196 * 179.76367 * 21 17 16 23 23 C 1.38194 * 120.09839 * 359.48585 * 21 17 16 24 24 H 1.09001 * 109.47092 * 311.30544 * 1 2 3 25 25 H 1.09005 * 109.47315 * 71.30075 * 1 2 3 26 26 H 1.08991 * 109.47483 * 191.30248 * 1 2 3 27 27 H 1.09001 * 109.46578 * 240.00739 * 2 1 3 28 28 H 1.08999 * 109.47029 * 120.00071 * 2 1 3 29 29 H 0.97006 * 120.00243 * 179.97438 * 7 6 4 30 30 H 1.07991 * 120.04984 * 0.04859 * 15 14 12 31 31 H 1.07996 * 119.90539 * 180.02562 * 16 15 14 32 32 H 1.08992 * 109.47105 * 120.25531 * 18 17 16 33 33 H 1.09001 * 109.46905 * 240.26228 * 18 17 16 34 34 H 1.09002 * 109.47103 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46911 * 299.99930 * 20 19 18 36 36 H 1.08995 * 109.47384 * 60.00090 * 20 19 18 37 37 H 1.07995 * 120.09202 * 180.23269 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0855 2.0834 -1.1729 5 1 2.4246 3.1088 -1.1697 6 6 1.7169 1.4767 -2.3685 7 7 1.0748 0.3309 -2.3529 8 14 2.1352 2.2909 -3.9969 9 1 2.8549 3.5648 -3.7428 10 1 2.9987 1.3848 -4.7959 11 1 0.8840 2.5708 -4.7461 12 6 2.4015 1.9605 1.1551 13 8 2.7027 3.1383 1.1739 14 6 2.4554 1.1643 2.3984 15 6 1.4093 0.2973 2.7218 16 6 1.4646 -0.4433 3.8841 17 6 2.5559 -0.3335 4.7275 18 6 2.6116 -1.1504 5.9927 19 8 1.4351 -1.9555 6.0919 20 6 1.3874 -2.7731 7.2630 21 6 3.5955 0.5282 4.4165 22 9 4.6557 0.6337 5.2472 23 6 3.5521 1.2757 3.2550 24 1 -0.3633 0.6783 0.7720 25 1 -0.3634 0.3295 -0.9735 26 1 -0.3634 -1.0076 0.2014 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 0.8173 -0.0922 -3.1870 30 1 0.5586 0.2067 2.0628 31 1 0.6560 -1.1140 4.1342 32 1 3.4912 -1.7936 5.9715 33 1 2.6693 -0.4839 6.8532 34 1 0.4646 -3.3533 7.2637 35 1 2.2418 -3.4499 7.2686 36 1 1.4196 -2.1400 8.1497 37 1 4.3641 1.9445 3.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864998237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = -69.465965 kcal Electronic energy + Delta-G solvation = -22110.434944 eV Core-core repulsion = 18575.887975 eV Total energy + Delta-G solvation = -3534.546969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.71618 -39.65051 -38.33198 -37.10207 -35.26510 -32.34450 -31.46309 -30.36529 -29.37066 -27.58287 -26.05074 -24.74743 -22.41652 -22.28807 -21.73980 -19.59794 -17.39626 -16.82011 -16.73314 -16.32855 -16.16609 -15.47546 -15.38246 -15.23951 -14.78679 -14.23218 -14.02889 -13.75348 -13.43786 -13.03502 -12.98485 -12.69052 -12.43067 -12.05472 -11.74289 -11.49591 -11.31775 -11.17195 -11.04611 -10.81599 -10.73451 -10.36331 -10.20544 -10.06430 -9.91314 -8.93867 -8.67928 -8.50870 -8.20465 -7.86781 -6.34627 -3.88405 1.22534 1.53011 3.07756 3.20099 3.27307 3.51270 3.55534 3.97840 4.16972 4.43918 4.70069 4.87469 5.02781 5.08813 5.10173 5.16148 5.26474 5.33119 5.44005 5.45587 5.61044 5.70089 6.09293 6.21941 6.32531 6.35951 6.45264 6.61804 6.68183 6.76782 6.79924 7.00267 7.14803 7.29609 7.52477 7.75843 7.97383 8.42442 9.06829 9.31511 9.87474 10.51907 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.004476 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.012808 B = 6253.513871 C = 6993.118541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 N -0.423 5.423 4 C -0.290 4.290 5 H 0.108 0.892 6 C 0.024 3.976 7 N -0.867 5.867 8 Si 0.933 3.067 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.281 1.281 12 C 0.464 3.536 13 O -0.592 6.592 14 C -0.057 4.057 15 C -0.119 4.119 16 C -0.077 4.077 17 C -0.131 4.131 18 C 0.111 3.889 19 O -0.384 6.384 20 C 0.032 3.968 21 C 0.092 3.908 22 F -0.143 7.143 23 C -0.116 4.116 24 H 0.026 0.974 25 H 0.100 0.900 26 H 0.037 0.963 27 H 0.119 0.881 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -8.045 12.274 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 N -0.139 5.139 4 C -0.418 4.418 5 H 0.126 0.874 6 C -0.178 4.178 7 N -0.508 5.508 8 Si 0.759 3.241 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.207 1.207 12 C 0.253 3.747 13 O -0.478 6.478 14 C -0.061 4.061 15 C -0.138 4.138 16 C -0.095 4.095 17 C -0.133 4.133 18 C 0.034 3.966 19 O -0.303 6.303 20 C -0.065 4.065 21 C 0.073 3.927 22 F -0.122 7.122 23 C -0.136 4.136 24 H 0.045 0.955 25 H 0.119 0.881 26 H 0.056 0.944 27 H 0.136 0.864 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.108 -7.598 11.958 14.168 hybrid contribution 0.493 0.153 -0.321 0.608 sum 0.385 -7.444 11.637 13.820 Atomic orbital electron populations 1.22361 0.96562 0.98480 1.03567 1.22124 0.94803 0.83247 1.01937 1.43815 1.52198 1.12140 1.05761 1.19957 1.40633 0.98443 0.82763 0.87381 1.25343 0.95979 0.96543 0.99936 1.70066 1.36258 1.17379 1.27142 0.85746 0.78374 0.79294 0.80686 1.19165 1.20502 1.20660 1.17701 0.86795 0.87317 0.82929 1.90621 1.56325 1.15605 1.85292 1.20142 0.93930 0.96026 0.96004 1.22130 0.99644 0.95040 0.96962 1.20765 0.97152 0.98834 0.92761 1.19611 0.95752 0.99706 0.98206 1.21058 0.87959 0.92586 0.94956 1.87859 1.41258 1.57908 1.43287 1.22747 1.02257 0.94041 0.87414 1.17166 0.85181 0.99941 0.90425 1.91451 1.54746 1.95292 1.70729 1.21044 0.99834 0.99981 0.92786 0.95480 0.88138 0.94425 0.86391 0.94044 0.92166 0.83250 0.84181 0.91889 0.91924 0.89426 0.94001 0.94025 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.53 37.16 0.32 -2.80 16 2 C 0.10 2.25 4.88 -4.04 -0.02 2.23 16 3 N -0.42 -10.74 2.64 -115.92 -0.31 -11.04 16 4 C -0.29 -7.82 9.49 -15.00 -0.14 -7.97 16 5 H 0.11 3.08 7.20 -52.49 -0.38 2.71 16 6 C 0.02 0.59 5.33 -17.46 -0.09 0.49 16 7 N -0.87 -20.98 7.28 55.50 0.40 -20.57 16 8 Si 0.93 19.86 29.57 -169.99 -5.03 14.83 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.46 11.70 7.23 -12.38 -0.09 11.61 16 13 O -0.59 -16.90 16.57 5.29 0.09 -16.81 16 14 C -0.06 -1.19 5.12 -104.98 -0.54 -1.73 16 15 C -0.12 -2.15 7.39 -39.16 -0.29 -2.44 16 16 C -0.08 -1.20 9.36 -39.65 -0.37 -1.58 16 17 C -0.13 -1.99 5.89 -104.46 -0.62 -2.61 16 18 C 0.11 1.35 5.90 36.01 0.21 1.56 16 19 O -0.38 -4.61 9.17 -35.23 -0.32 -4.93 16 20 C 0.03 0.26 11.01 101.05 1.11 1.37 16 21 C 0.09 1.52 7.24 -39.48 -0.29 1.24 16 22 F -0.14 -2.23 16.79 2.25 0.04 -2.19 16 23 C -0.12 -2.20 9.67 -39.09 -0.38 -2.58 16 24 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 25 H 0.10 2.31 5.86 -51.93 -0.30 2.01 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 2.82 5.73 -51.93 -0.30 2.52 16 28 H 0.04 0.84 4.97 -51.93 -0.26 0.58 16 29 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 30 H 0.15 2.69 3.75 -52.49 -0.20 2.49 16 31 H 0.14 1.95 6.99 -52.49 -0.37 1.58 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.14 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -29.00 306.65 -5.92 -34.92 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.24 Total: 4.38 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.18 Total: -3.19 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.10 Total: -31.61 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.24 Total: -21.74 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.00 -5.92 -34.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.548 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds