Wall clock time and date at job start Tue Mar 31 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47007 * 2 1 4 4 C 1.36866 * 120.00478 * 278.28277 * 3 2 1 5 5 H 1.07998 * 120.00122 * 178.63786 * 4 3 2 6 6 C 1.39047 * 119.99733 * 358.64307 * 4 3 2 7 7 N 1.31356 * 120.00275 * 12.70253 * 6 4 3 8 8 Si 1.86807 * 119.99949 * 192.70675 * 6 4 3 9 9 H 1.48498 * 109.46839 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46824 * 119.99368 * 8 6 4 11 11 H 1.48491 * 109.47080 * 239.99891 * 8 6 4 12 12 C 1.34781 * 119.99569 * 98.28459 * 3 2 1 13 13 O 1.21588 * 119.99841 * 186.00414 * 12 3 2 14 14 C 1.47734 * 119.99968 * 6.00361 * 12 3 2 15 15 C 1.39666 * 120.13844 * 315.28814 * 14 12 3 16 16 C 1.37929 * 119.89434 * 180.02562 * 15 14 12 17 17 C 1.38358 * 120.18041 * 359.74473 * 16 15 14 18 18 C 1.50699 * 119.85914 * 180.25597 * 17 16 15 19 19 O 1.42906 * 109.46950 * 0.25731 * 18 17 16 20 20 C 1.42903 * 113.99775 * 180.02562 * 19 18 17 21 21 C 1.38564 * 120.28210 * 0.51431 * 17 16 15 22 22 F 1.35105 * 119.95196 * 179.76367 * 21 17 16 23 23 C 1.38194 * 120.09839 * 359.48585 * 21 17 16 24 24 H 1.09001 * 109.47092 * 311.30544 * 1 2 3 25 25 H 1.09005 * 109.47315 * 71.30075 * 1 2 3 26 26 H 1.08991 * 109.47483 * 191.30248 * 1 2 3 27 27 H 1.09001 * 109.46578 * 240.00739 * 2 1 3 28 28 H 1.08999 * 109.47029 * 120.00071 * 2 1 3 29 29 H 0.97006 * 120.00243 * 179.97438 * 7 6 4 30 30 H 1.07991 * 120.04984 * 0.04859 * 15 14 12 31 31 H 1.07996 * 119.90539 * 180.02562 * 16 15 14 32 32 H 1.08992 * 109.47105 * 120.25531 * 18 17 16 33 33 H 1.09001 * 109.46905 * 240.26228 * 18 17 16 34 34 H 1.09002 * 109.47103 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46911 * 299.99930 * 20 19 18 36 36 H 1.08995 * 109.47384 * 60.00090 * 20 19 18 37 37 H 1.07995 * 120.09202 * 180.23269 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0855 2.0834 -1.1729 5 1 2.4246 3.1088 -1.1697 6 6 1.7169 1.4767 -2.3685 7 7 1.0748 0.3309 -2.3529 8 14 2.1352 2.2909 -3.9969 9 1 2.8549 3.5648 -3.7428 10 1 2.9987 1.3848 -4.7959 11 1 0.8840 2.5708 -4.7461 12 6 2.4015 1.9605 1.1551 13 8 2.7027 3.1383 1.1739 14 6 2.4554 1.1643 2.3984 15 6 1.4093 0.2973 2.7218 16 6 1.4646 -0.4433 3.8841 17 6 2.5559 -0.3335 4.7275 18 6 2.6116 -1.1504 5.9927 19 8 1.4351 -1.9555 6.0919 20 6 1.3874 -2.7731 7.2630 21 6 3.5955 0.5282 4.4165 22 9 4.6557 0.6337 5.2472 23 6 3.5521 1.2757 3.2550 24 1 -0.3633 0.6783 0.7720 25 1 -0.3634 0.3295 -0.9735 26 1 -0.3634 -1.0076 0.2014 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 0.8173 -0.0922 -3.1870 30 1 0.5586 0.2067 2.0628 31 1 0.6560 -1.1140 4.1342 32 1 3.4912 -1.7936 5.9715 33 1 2.6693 -0.4839 6.8532 34 1 0.4646 -3.3533 7.2637 35 1 2.2418 -3.4499 7.2686 36 1 1.4196 -2.1400 8.1497 37 1 4.3641 1.9445 3.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864998237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:19 Heat of formation + Delta-G solvation = -86.205163 kcal Electronic energy + Delta-G solvation = -22111.160810 eV Core-core repulsion = 18575.887975 eV Total energy + Delta-G solvation = -3535.272835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.00800 -41.26846 -39.61646 -38.30998 -37.21505 -34.05926 -32.95679 -31.93299 -31.01329 -28.71034 -27.23026 -26.24341 -24.03262 -23.73305 -23.21100 -21.25852 -19.09054 -18.61676 -17.88934 -17.62182 -17.15623 -17.02376 -16.57752 -16.42364 -16.37388 -15.92742 -15.58347 -15.30138 -14.94774 -14.72209 -14.08210 -13.93984 -13.89445 -13.62368 -13.14420 -13.01277 -12.82631 -12.61506 -12.53262 -12.37814 -12.15700 -12.08722 -11.93636 -11.76048 -10.82485 -10.79905 -10.52452 -9.99183 -9.79746 -9.57868 -8.25877 -5.90400 -0.18288 0.14252 1.35774 1.43326 1.55925 1.89647 2.22906 2.55300 2.64508 2.86502 3.09632 3.25559 3.63433 3.82691 3.86829 4.13439 4.18990 4.38494 4.39073 4.49066 4.59189 4.64343 4.71971 4.84767 4.90423 4.93608 4.98958 5.05243 5.15778 5.20179 5.35981 5.37874 5.61053 5.78141 5.98065 6.03208 6.18675 6.49411 7.10640 7.38970 7.94612 8.58232 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.004476 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.012808 B = 6253.513871 C = 6993.118541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 N -0.430 5.430 4 C -0.341 4.341 5 H 0.076 0.924 6 C 0.003 3.997 7 N -0.864 5.864 8 Si 0.993 3.007 9 H -0.281 1.281 10 H -0.266 1.266 11 H -0.269 1.269 12 C 0.449 3.551 13 O -0.643 6.643 14 C -0.084 4.084 15 C -0.116 4.116 16 C -0.066 4.066 17 C -0.114 4.114 18 C 0.111 3.889 19 O -0.403 6.403 20 C 0.025 3.975 21 C 0.097 3.903 22 F -0.135 7.135 23 C -0.127 4.127 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.276 0.724 30 H 0.150 0.850 31 H 0.167 0.833 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 -10.611 13.627 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 N -0.145 5.145 4 C -0.469 4.469 5 H 0.094 0.906 6 C -0.199 4.199 7 N -0.502 5.502 8 Si 0.817 3.183 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.194 1.194 12 C 0.239 3.761 13 O -0.534 6.534 14 C -0.087 4.087 15 C -0.135 4.135 16 C -0.083 4.083 17 C -0.116 4.116 18 C 0.035 3.965 19 O -0.323 6.323 20 C -0.071 4.071 21 C 0.078 3.922 22 F -0.114 7.114 23 C -0.147 4.147 24 H 0.046 0.954 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.184 0.816 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.859 -10.227 13.320 16.815 hybrid contribution 0.701 0.849 -0.637 1.272 sum -0.158 -9.378 12.683 15.775 Atomic orbital electron populations 1.22199 0.95168 1.00412 1.02124 1.22167 0.95866 0.81644 1.02072 1.44018 1.51991 1.13059 1.05432 1.19804 1.44254 0.98168 0.84635 0.90639 1.25986 0.94903 0.97132 1.01906 1.70149 1.34545 1.17198 1.28350 0.84881 0.78440 0.78016 0.76994 1.20603 1.19090 1.19402 1.18429 0.86079 0.87257 0.84300 1.90552 1.58457 1.17968 1.86426 1.19795 0.96162 0.97841 0.94912 1.22102 0.98631 0.94699 0.98027 1.20986 0.97829 0.98096 0.91407 1.20000 0.94283 0.98287 0.98992 1.21108 0.88953 0.92972 0.93439 1.87811 1.40952 1.58373 1.45140 1.22976 1.03530 0.94074 0.86476 1.17047 0.85839 0.99699 0.89640 1.91473 1.54467 1.95231 1.70202 1.20991 0.99326 1.00618 0.93794 0.95442 0.90637 0.91007 0.88068 0.91955 0.91283 0.83269 0.81589 0.90200 0.90299 0.88103 0.92875 0.92910 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.53 71.98 0.61 -5.08 16 2 C 0.10 4.65 4.88 86.38 0.42 5.07 16 3 N -0.43 -22.75 2.64 -638.93 -1.69 -24.44 16 4 C -0.34 -19.33 9.49 84.10 0.80 -18.53 16 5 H 0.08 4.66 7.20 -2.91 -0.02 4.64 16 6 C 0.00 0.16 5.33 84.96 0.45 0.61 16 7 N -0.86 -41.56 7.28 21.68 0.16 -41.40 16 8 Si 0.99 41.11 29.57 68.60 2.03 43.14 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 12 C 0.45 23.89 7.23 86.75 0.63 24.52 16 13 O -0.64 -39.42 16.57 -3.99 -0.07 -39.48 16 14 C -0.08 -3.55 5.12 -20.09 -0.10 -3.65 16 15 C -0.12 -4.06 7.39 22.54 0.17 -3.89 16 16 C -0.07 -1.86 9.36 22.22 0.21 -1.65 16 17 C -0.11 -3.13 5.89 -19.76 -0.12 -3.25 16 18 C 0.11 2.26 5.90 71.24 0.42 2.68 16 19 O -0.40 -7.98 9.17 -148.98 -1.37 -9.35 16 20 C 0.03 0.31 11.01 113.37 1.25 1.56 16 21 C 0.10 3.06 7.24 22.34 0.16 3.22 16 22 F -0.14 -3.93 16.79 44.97 0.75 -3.18 16 23 C -0.13 -4.89 9.67 22.59 0.22 -4.67 16 24 H 0.03 1.08 6.57 -2.39 -0.02 1.07 16 25 H 0.08 3.45 5.86 -2.38 -0.01 3.43 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.10 4.85 5.73 -2.39 -0.01 4.83 16 28 H 0.06 2.49 4.97 -2.39 -0.01 2.47 16 29 H 0.28 12.29 8.31 -92.70 -0.77 11.52 16 30 H 0.15 5.19 3.75 -2.92 -0.01 5.18 16 31 H 0.17 3.93 6.99 -2.91 -0.02 3.91 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -65.74 306.65 6.04 -59.69 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.10 Total: 18.08 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.12 Total: -3.07 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.53 Total: -65.84 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.43 Total: -48.83 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.18 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -65.74 6.04 -59.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.512 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds