Wall clock time and date at job start Tue Mar 31 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99680 * 2 1 4 4 C 1.50706 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.38342 * 119.86419 * 0.27321 * 4 3 2 6 6 C 1.37940 * 120.17522 * 180.27630 * 5 4 3 7 7 C 1.39599 * 119.90240 * 359.72692 * 6 5 4 8 8 C 1.47854 * 120.13145 * 180.02562 * 7 6 5 9 9 O 1.21550 * 119.99556 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00067 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00001 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46951 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99552 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99953 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99516 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00009 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46888 * 90.00692 * 17 15 13 19 19 H 1.48508 * 109.46847 * 209.99994 * 17 15 13 20 20 H 1.48500 * 109.47376 * 330.00165 * 17 15 13 21 21 C 1.39529 * 119.73393 * 359.97438 * 7 6 5 22 22 C 1.38204 * 119.82840 * 0.02562 * 21 7 6 23 23 F 1.35104 * 119.95575 * 180.02562 * 22 21 7 24 24 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47341 * 299.99981 * 1 2 3 26 26 H 1.08998 * 109.47103 * 59.99927 * 1 2 3 27 27 H 1.09005 * 109.47551 * 60.00261 * 3 2 1 28 28 H 1.09004 * 109.47273 * 299.99793 * 3 2 1 29 29 H 1.08003 * 119.91247 * 0.02562 * 5 4 3 30 30 H 1.07996 * 120.05227 * 179.70037 * 6 5 4 31 31 H 0.97006 * 120.00057 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.46948 * 299.99766 * 11 10 8 33 33 H 1.08999 * 109.47078 * 59.99980 * 11 10 8 34 34 H 1.09002 * 109.47176 * 299.99715 * 12 11 10 35 35 H 1.08999 * 109.47174 * 60.00127 * 12 11 10 36 36 H 0.96998 * 119.99446 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.08323 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1046 -0.0637 -0.0068 6 6 5.4791 -0.1800 -0.0017 7 6 6.2746 0.9672 0.0040 8 6 7.7483 0.8485 0.0090 9 8 8.4386 1.8489 0.0134 10 7 8.3263 -0.3691 0.0085 11 6 9.7865 -0.4867 0.0139 12 6 10.1790 -1.9655 0.0128 13 6 11.6812 -2.0866 0.0178 14 1 12.2945 -1.1976 0.0210 15 6 12.2724 -3.3322 0.0172 16 7 13.5833 -3.4377 0.0210 17 14 11.2115 -4.8696 0.0109 18 1 10.9348 -5.2743 -1.3909 19 1 11.9262 -5.9670 0.7111 20 1 9.9302 -4.5898 0.7075 21 6 5.6733 2.2263 0.0039 22 6 4.2951 2.3299 -0.0012 23 9 3.7102 3.5478 -0.0018 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.4890 -0.9511 -0.0116 30 1 5.9392 -1.1570 -0.0017 31 1 7.7754 -1.1675 0.0053 32 1 10.1934 -0.0017 -0.8734 33 1 10.1864 -0.0057 0.9066 34 1 9.7721 -2.4501 0.9004 35 1 9.7791 -2.4469 -0.8796 36 1 13.9993 -4.3140 0.0210 37 1 6.2832 3.1175 0.0079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867345749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:53 Heat of formation + Delta-G solvation = -108.534627 kcal Electronic energy + Delta-G solvation = -20720.471010 eV Core-core repulsion = 17184.229897 eV Total energy + Delta-G solvation = -3536.241113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.20394 -40.20353 -38.86359 -37.66933 -35.12502 -32.99774 -32.44316 -30.98060 -30.07377 -27.92464 -26.32830 -24.81732 -22.93752 -22.66187 -20.89108 -20.37373 -18.27393 -17.30044 -16.93786 -16.55662 -16.53733 -16.13194 -15.92986 -15.73895 -15.17120 -15.06330 -14.55245 -14.19998 -13.80067 -13.50378 -13.45453 -13.29143 -13.27403 -12.63344 -12.23493 -12.15543 -11.70458 -11.55192 -11.46438 -11.23813 -10.43913 -10.35368 -10.33839 -9.99409 -9.68441 -9.34655 -9.23341 -8.99646 -8.67253 -8.57895 -6.12722 -4.13181 0.46001 0.91432 2.72826 3.13581 3.24100 3.31643 3.32655 3.34923 3.62615 3.97808 4.26257 4.36098 4.52643 4.70823 4.76534 4.82116 4.84240 4.93528 4.98543 5.09344 5.20081 5.22397 5.42906 5.71025 5.77425 5.90885 5.98328 6.09179 6.15949 6.49379 6.51517 6.62619 6.64264 7.08527 7.19210 7.63601 7.77626 8.37963 8.44600 8.91467 9.47101 11.00285 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.003174 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.289627 B = 8819.509902 C = 9955.736644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.107 4.107 5 C -0.076 4.076 6 C -0.097 4.097 7 C -0.097 4.097 8 C 0.549 3.451 9 O -0.538 6.538 10 N -0.717 5.717 11 C 0.129 3.871 12 C -0.023 4.023 13 C -0.524 4.524 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.095 4.095 22 C 0.095 3.905 23 F -0.136 7.136 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.616 6.835 -0.049 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.116 4.116 7 C -0.101 4.101 8 C 0.335 3.665 9 O -0.416 6.416 10 N -0.367 5.367 11 C 0.007 3.993 12 C -0.060 4.060 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.536 5.536 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.115 4.115 22 C 0.075 3.925 23 F -0.114 7.114 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.828 7.283 -0.043 27.799 hybrid contribution -0.965 -0.836 -0.023 1.277 sum -27.793 6.448 -0.065 28.532 Atomic orbital electron populations 1.22781 0.80255 1.03192 1.00247 1.87836 1.20202 1.26876 1.95541 1.21135 0.89188 0.85409 1.01480 1.19833 0.94849 0.92961 1.03220 1.20831 0.94103 0.97069 0.97340 1.21490 0.93706 0.98316 0.98058 1.19981 0.93989 0.93319 1.02786 1.18117 0.86798 0.84117 0.77503 1.90776 1.64330 1.36490 1.50048 1.46265 1.09868 1.07181 1.73381 1.21591 0.75790 0.99967 1.01946 1.19809 0.98528 0.90782 0.96919 1.20904 0.88966 0.94541 1.51782 0.90572 1.25005 0.94889 0.99058 0.94344 1.69906 1.09020 1.24362 1.50307 0.86750 0.80900 0.82893 0.78521 1.20194 1.21251 1.19054 1.21168 0.92294 0.99102 0.98912 1.17186 0.90734 0.79538 1.05009 1.91504 1.84378 1.41532 1.94012 0.89184 0.93800 0.93794 0.91303 0.91314 0.83391 0.84472 0.76888 0.91613 0.91600 0.95906 0.96347 0.92521 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.19 9.17 -35.23 -0.32 -3.51 16 3 C 0.10 0.84 5.90 36.01 0.21 1.05 16 4 C -0.11 -1.07 5.89 -104.47 -0.62 -1.69 16 5 C -0.08 -0.73 9.36 -39.65 -0.37 -1.11 16 6 C -0.10 -1.02 9.54 -39.18 -0.37 -1.40 16 7 C -0.10 -1.28 5.87 -104.97 -0.62 -1.90 16 8 C 0.55 9.09 7.77 -12.33 -0.10 9.00 16 9 O -0.54 -10.85 16.35 5.32 0.09 -10.76 16 10 N -0.72 -11.64 5.51 -61.25 -0.34 -11.98 16 11 C 0.13 2.58 5.61 -4.04 -0.02 2.56 16 12 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 13 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 14 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 17 Si 0.88 20.76 27.47 -169.99 -4.67 16.10 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 21 C -0.10 -1.19 9.57 -39.11 -0.37 -1.57 16 22 C 0.09 1.05 7.24 -39.48 -0.29 0.77 16 23 F -0.14 -1.49 16.79 2.25 0.04 -1.45 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.15 1.25 6.99 -52.48 -0.37 0.89 16 30 H 0.14 1.18 6.40 -52.49 -0.34 0.85 16 31 H 0.40 5.26 6.51 -40.82 -0.27 4.99 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 35 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.15 1.93 7.65 -52.49 -0.40 1.53 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -32.41 322.65 -6.23 -38.63 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.68 Total: 1.08 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.98 Total: -6.60 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.44 Total: -38.35 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.24 Total: -14.27 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.41 -6.23 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867345749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.901 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds