Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99743 * 2 1 4 4 H 1.48497 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46888 * 300.00296 * 3 2 1 6 6 H 1.48504 * 109.46987 * 59.99913 * 3 2 1 7 7 C 1.37879 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47166 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00139 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99889 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00432 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00006 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47106 * 179.97438 * 15 14 12 17 17 C 1.38137 * 119.94518 * 89.99952 * 16 15 14 18 18 C 1.38915 * 119.96898 * 179.97438 * 17 16 15 19 19 N 1.39664 * 120.05714 * 179.97438 * 18 17 16 20 20 C 1.38887 * 119.87841 * 0.02562 * 18 17 16 21 21 C 1.38296 * 119.90265 * 359.97438 * 20 18 17 22 22 F 1.35097 * 119.99079 * 179.97438 * 21 20 18 23 23 C 1.38228 * 119.94939 * 269.72704 * 16 15 14 24 24 H 0.97001 * 120.00510 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46906 * 60.00006 * 9 7 2 26 26 H 1.09002 * 109.47168 * 300.00436 * 9 7 2 27 27 H 1.09000 * 109.46925 * 60.00081 * 10 9 7 28 28 H 1.08999 * 109.46897 * 300.00181 * 10 9 7 29 29 H 0.96998 * 120.00095 * 359.97438 * 11 10 9 30 30 H 0.96998 * 119.99803 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.47001 * 59.99676 * 15 14 12 32 32 H 1.09000 * 109.47574 * 299.99892 * 15 14 12 33 33 H 1.07993 * 120.01531 * 359.95468 * 17 16 15 34 34 H 0.97003 * 120.00601 * 0.02562 * 19 18 17 35 35 H 0.97001 * 120.00098 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.04864 * 179.97438 * 20 18 17 37 37 H 1.07998 * 119.94113 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5131 -4.9307 -0.0001 12 6 2.1870 -6.0979 0.0003 13 8 3.4029 -6.0979 0.0007 14 7 1.5132 -7.2652 -0.0008 15 6 2.2458 -8.5338 -0.0009 16 6 1.2666 -9.6794 -0.0015 17 6 0.8189 -10.2032 -1.1988 18 6 -0.0833 -11.2594 -1.2000 19 7 -0.5375 -11.7901 -2.4094 20 6 -0.5336 -11.7861 0.0037 21 6 -0.0820 -11.2577 1.1993 22 9 -0.5193 -11.7683 2.3712 23 6 0.8221 -10.2080 1.1958 24 1 -0.4851 0.8400 0.0004 25 1 0.6249 -2.5571 -0.8898 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8722 -3.6042 -0.8894 29 1 0.5431 -4.9308 0.0000 30 1 0.5432 -7.2652 -0.0015 31 1 2.8718 -8.5919 0.8895 32 1 2.8731 -8.5911 -0.8904 33 1 1.1699 -9.7915 -2.1334 34 1 -0.2227 -11.4214 -3.2496 35 1 -1.1678 -12.5274 -2.4093 36 1 -1.2353 -12.6071 0.0060 37 1 1.1769 -9.7990 2.1303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891768842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = -64.748039 kcal Electronic energy + Delta-G solvation = -20388.549739 eV Core-core repulsion = 16886.500106 eV Total energy + Delta-G solvation = -3502.049633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.13517 -40.00683 -39.22807 -35.82280 -34.75528 -33.93558 -32.80389 -31.23576 -29.46124 -29.04084 -26.42318 -24.42862 -22.72538 -21.83153 -21.00511 -20.52603 -18.35970 -17.75294 -17.40389 -16.52561 -16.37790 -15.93586 -15.76673 -15.62865 -15.41942 -15.09434 -14.50068 -14.06845 -13.77250 -13.70699 -13.23406 -13.18712 -12.98480 -12.36525 -12.26712 -12.08501 -11.54121 -11.15632 -11.03096 -10.90109 -10.59887 -10.30147 -9.94715 -9.55483 -9.24558 -9.07348 -9.01534 -8.46920 -8.22109 -8.03819 -6.07518 -4.09935 0.79713 1.08277 3.00228 3.28643 3.29921 3.37436 3.42565 3.50452 3.61508 4.04812 4.29197 4.42018 4.73419 4.75932 4.78236 5.04120 5.07713 5.29719 5.38876 5.51991 5.66166 5.81199 5.86079 6.22986 6.32309 6.42764 6.45102 6.58028 6.80552 6.96977 7.03004 7.25410 7.27054 7.59565 7.65880 7.92056 8.28173 8.45910 8.95185 9.02148 9.54809 11.04209 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.002491 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.653793 B =11236.926599 C =11276.189193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.749 5.749 15 C 0.181 3.819 16 C -0.027 4.027 17 C -0.187 4.187 18 C 0.241 3.759 19 N -0.873 5.873 20 C -0.232 4.232 21 C 0.145 3.855 22 F -0.139 7.139 23 C -0.193 4.193 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.393 0.607 30 H 0.396 0.604 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.403 0.597 35 H 0.400 0.600 36 H 0.132 0.868 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -25.821 -2.822 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.406 5.406 15 C 0.056 3.944 16 C -0.028 4.028 17 C -0.211 4.211 18 C 0.136 3.864 19 N -0.411 5.411 20 C -0.256 4.256 21 C 0.125 3.875 22 F -0.117 7.117 23 C -0.214 4.214 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.229 0.771 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.231 0.769 35 H 0.228 0.772 36 H 0.150 0.850 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.535 -25.664 -2.754 25.936 hybrid contribution -0.863 0.602 -0.119 1.059 sum -3.398 -25.062 -2.873 25.454 Atomic orbital electron populations 1.69965 1.06092 1.26726 1.50599 1.25000 0.94889 0.99415 0.95050 0.86460 0.80196 0.83352 0.77581 1.19559 1.20972 1.20953 1.21097 0.93319 0.90353 1.51040 0.92149 1.19334 0.94274 0.91107 0.97813 1.21590 0.95624 0.80382 1.00659 1.45529 1.09874 1.05277 1.78462 1.16046 0.85608 0.80427 0.78048 1.90893 1.11739 1.86640 1.58437 1.45103 1.09541 1.04125 1.81878 1.19960 0.91820 0.79194 1.03387 1.19455 0.95852 0.95583 0.91911 1.20597 1.02411 0.99448 0.98623 1.17383 0.91569 0.91424 0.86056 1.42478 1.52660 1.40940 1.05033 1.20453 1.08523 1.06347 0.90306 1.17294 0.95491 0.94039 0.80656 1.91506 1.88119 1.86098 1.45988 1.20861 1.01889 0.99250 0.99396 0.92933 0.95986 0.95951 0.92759 0.92780 0.77364 0.77056 0.90532 0.90559 0.85179 0.76864 0.77179 0.85025 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.13 5.56 -65.23 -0.36 -13.49 16 12 C 0.70 12.22 8.57 -86.92 -0.74 11.48 16 13 O -0.60 -12.84 16.34 5.29 0.09 -12.76 16 14 N -0.75 -9.49 5.55 -66.41 -0.37 -9.86 16 15 C 0.18 2.00 5.80 -5.19 -0.03 1.97 16 16 C -0.03 -0.25 5.24 -104.66 -0.55 -0.80 16 17 C -0.19 -1.54 9.55 -39.37 -0.38 -1.91 16 18 C 0.24 1.81 6.75 -83.80 -0.57 1.24 16 19 N -0.87 -4.02 9.09 32.41 0.29 -3.72 16 20 C -0.23 -1.90 9.87 -39.32 -0.39 -2.29 16 21 C 0.15 1.40 7.30 -39.45 -0.29 1.11 16 22 F -0.14 -1.46 17.27 2.25 0.04 -1.43 16 23 C -0.19 -1.84 9.67 -39.47 -0.38 -2.22 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.39 6.03 8.49 -40.82 -0.35 5.68 16 30 H 0.40 4.14 8.48 -40.82 -0.35 3.80 16 31 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.40 1.31 8.84 -40.82 -0.36 0.95 16 35 H 0.40 1.17 8.84 -40.82 -0.36 0.81 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -33.25 329.58 -8.28 -41.53 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.75 Total: 5.32 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.90 Total: -1.51 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.30 Total: -52.57 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.25 -8.28 -41.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891768842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.217 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds