Wall clock time and date at job start Tue Mar 31 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76203 * 102.99738 * 2 1 4 4 C 1.35447 * 125.86890 * 180.02562 * 3 2 1 5 5 C 1.41384 * 106.77276 * 180.02562 * 4 3 2 6 6 C 1.34457 * 106.94725 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.71953 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47294 * 89.99327 * 7 6 5 9 9 C 1.46847 * 111.00067 * 293.95364 * 8 7 6 10 10 C 1.53038 * 109.52390 * 185.83855 * 9 8 7 11 11 C 1.53120 * 109.28065 * 300.82302 * 10 9 8 12 12 C 1.53119 * 109.15793 * 57.65412 * 11 10 9 13 13 H 1.08996 * 109.50606 * 62.32699 * 12 11 10 14 14 C 1.50702 * 109.50169 * 182.40723 * 12 11 10 15 15 H 1.07996 * 120.00131 * 114.44348 * 14 12 11 16 16 C 1.37882 * 119.99807 * 294.43486 * 14 12 11 17 17 N 1.31512 * 119.99849 * 161.78346 * 16 14 12 18 18 Si 1.86800 * 120.00107 * 341.78689 * 16 14 12 19 19 H 1.48494 * 109.47066 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47295 * 59.99673 * 18 16 14 21 21 H 1.48505 * 109.46714 * 299.99597 * 18 16 14 22 22 C 1.46839 * 111.00306 * 58.16768 * 8 7 6 23 23 O 1.34410 * 125.87325 * 0.35161 * 3 2 1 24 24 H 1.09004 * 109.47086 * 59.99916 * 1 2 3 25 25 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47026 * 299.99814 * 1 2 3 27 27 H 1.07995 * 126.60968 * 0.02562 * 4 3 2 28 28 H 1.08007 * 126.52674 * 180.02562 * 5 4 3 29 29 H 1.09009 * 109.46924 * 329.99226 * 7 6 5 30 30 H 1.08997 * 109.47516 * 209.99618 * 7 6 5 31 31 H 1.09006 * 109.46324 * 65.82806 * 9 8 7 32 32 H 1.09001 * 109.46884 * 305.85658 * 9 8 7 33 33 H 1.09003 * 109.50443 * 180.88280 * 10 9 8 34 34 H 1.09004 * 109.53342 * 60.78713 * 10 9 8 35 35 H 1.09003 * 109.52289 * 297.74978 * 11 10 9 36 36 H 1.09000 * 109.57397 * 177.58923 * 11 10 9 37 37 H 0.97000 * 119.99868 * 354.67642 * 17 16 14 38 38 H 1.09006 * 109.46328 * 54.13885 * 22 8 7 39 39 H 1.09009 * 109.46232 * 294.17490 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.4583 2.2433 -0.0005 5 6 3.3081 3.6492 0.0003 6 6 1.9875 3.9022 0.0018 7 6 1.3537 5.2694 0.0026 8 7 1.1463 5.7138 -1.3821 9 6 2.4292 5.9239 -2.0651 10 6 2.1788 6.5229 -3.4509 11 6 1.2974 5.5692 -4.2622 12 6 -0.0121 5.3292 -3.5059 13 1 -0.5508 6.2712 -3.4028 14 6 -0.8609 4.3452 -4.2691 15 1 -1.0759 3.3753 -3.8458 16 6 -1.3630 4.6835 -5.5079 17 7 -1.7863 3.7437 -6.3248 18 14 -1.4420 6.4764 -6.0260 19 1 -2.0180 6.5722 -7.3913 20 1 -0.0735 7.0531 -6.0240 21 1 -2.2978 7.2294 -5.0742 22 6 0.3019 4.7648 -2.1185 23 8 1.3262 2.7293 0.0067 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.3886 1.6949 -0.0013 28 1 4.1028 4.3806 -0.0002 29 1 2.0090 5.9734 0.5159 30 1 0.3940 5.2248 0.5174 31 1 2.9454 4.9695 -2.1700 32 1 3.0447 6.6071 -1.4800 33 1 3.1302 6.6642 -3.9637 34 1 1.6753 7.4841 -3.3469 35 1 1.8174 4.6212 -4.4003 36 1 1.0806 6.0108 -5.2349 37 1 -1.6746 2.8095 -6.0887 38 1 -0.6279 4.6060 -1.5720 39 1 0.8280 3.8158 -2.2231 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895229896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:31 Heat of formation + Delta-G solvation = -9.542576 kcal Electronic energy + Delta-G solvation = -20551.382691 eV Core-core repulsion = 17585.647372 eV Total energy + Delta-G solvation = -2965.735319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.60508 -39.96372 -35.98488 -34.31497 -33.91944 -31.93941 -30.91198 -30.00402 -27.33384 -26.58956 -24.01188 -23.20246 -22.49427 -21.70983 -20.43201 -19.70434 -19.21664 -17.50760 -17.07403 -16.46260 -16.19357 -15.79578 -15.52011 -15.21462 -14.83736 -14.66446 -14.60748 -14.38129 -14.31425 -13.90574 -13.77913 -13.51457 -13.29186 -13.01614 -12.59588 -12.33842 -12.24487 -11.94213 -11.79588 -11.73090 -11.44158 -11.16992 -11.06892 -10.74168 -10.49149 -10.39833 -9.48947 -8.76342 -8.43225 -6.38362 0.13650 0.48422 0.84309 1.45736 1.50801 1.53237 1.73597 2.41796 2.49806 2.99937 3.04010 3.77107 3.97024 4.02494 4.04975 4.07694 4.10624 4.20624 4.28060 4.47853 4.54426 4.63263 4.64510 4.66953 4.74720 4.80589 4.84426 4.87497 4.93106 5.02039 5.20758 5.24932 5.46601 5.47708 5.71955 5.78845 5.93726 6.01156 6.10482 6.24364 6.54028 7.38133 8.60168 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.005725 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.456568 B = 4889.679385 C = 5950.048255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.034 6.034 3 C -0.060 4.060 4 C -0.186 4.186 5 C -0.187 4.187 6 C -0.050 4.050 7 C 0.131 3.869 8 N -0.524 5.524 9 C 0.056 3.944 10 C -0.114 4.114 11 C -0.122 4.122 12 C 0.025 3.975 13 H 0.032 0.968 14 C -0.605 4.605 15 H 0.007 0.993 16 C -0.017 4.017 17 N -0.939 5.939 18 Si 1.082 2.918 19 H -0.291 1.291 20 H -0.237 1.237 21 H -0.265 1.265 22 C 0.096 3.904 23 O -0.191 6.191 24 H 0.067 0.933 25 H 0.139 0.861 26 H 0.093 0.907 27 H 0.169 0.831 28 H 0.179 0.821 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.250 0.750 38 H 0.047 0.953 39 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.308 1.395 15.629 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.203 5.797 3 C -0.220 4.220 4 C -0.213 4.213 5 C -0.208 4.208 6 C -0.106 4.106 7 C 0.003 3.997 8 N -0.246 5.246 9 C -0.072 4.072 10 C -0.152 4.152 11 C -0.160 4.160 12 C 0.005 3.995 13 H 0.050 0.950 14 C -0.643 4.643 15 H 0.025 0.975 16 C -0.214 4.214 17 N -0.575 5.575 18 Si 0.903 3.097 19 H -0.218 1.218 20 H -0.162 1.162 21 H -0.190 1.190 22 C -0.032 4.032 23 O -0.089 6.089 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.112 0.888 27 H 0.187 0.813 28 H 0.196 0.804 29 H 0.161 0.839 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 10.843 1.801 14.447 18.153 hybrid contribution -0.285 -1.906 0.801 2.087 sum 10.558 -0.105 15.248 18.547 Atomic orbital electron populations 1.23663 0.92902 1.08769 1.05997 1.85352 1.08488 0.92478 1.93338 1.24683 0.91707 0.93269 1.12360 1.21869 0.96656 0.94708 1.08075 1.21880 0.95952 0.95847 1.07157 1.24216 0.92704 0.87499 1.06135 1.21246 1.02138 0.85215 0.91120 1.62428 1.15747 1.44607 1.01859 1.22228 0.89781 0.99703 0.95460 1.21654 0.99867 0.98906 0.94781 1.21976 0.97019 0.97765 0.99285 1.18955 0.93316 0.95648 0.91552 0.94972 1.22188 1.35898 1.01062 1.05123 0.97461 1.27256 0.92239 1.09181 0.92750 1.70975 1.47876 1.01041 1.37570 0.83633 0.79350 0.70829 0.75882 1.21754 1.16180 1.18980 1.21704 0.94884 0.91667 0.94914 1.84259 1.37366 1.14659 1.72616 0.91388 0.84259 0.88817 0.81342 0.80396 0.83854 0.89273 0.95771 0.87273 0.89968 0.90741 0.95710 0.93027 0.94177 0.93461 0.98316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 10.47 113.37 1.19 -2.15 16 2 S -0.03 -0.87 22.75 -56.49 -1.29 -2.16 16 3 C -0.06 -1.86 7.35 67.17 0.49 -1.36 16 4 C -0.19 -5.10 10.88 22.40 0.24 -4.86 16 5 C -0.19 -4.81 9.54 22.18 0.21 -4.59 16 6 C -0.05 -1.47 4.88 24.82 0.12 -1.35 16 7 C 0.13 3.34 5.90 85.56 0.51 3.84 16 8 N -0.52 -16.86 4.86 -900.93 -4.38 -21.24 16 9 C 0.06 1.58 4.98 86.33 0.43 2.01 16 10 C -0.11 -3.61 6.09 30.65 0.19 -3.42 16 11 C -0.12 -5.28 4.97 30.67 0.15 -5.13 16 12 C 0.02 1.19 1.84 -11.49 -0.02 1.17 16 13 H 0.03 1.54 6.79 -2.39 -0.02 1.53 16 14 C -0.60 -35.79 8.82 25.60 0.23 -35.56 16 15 H 0.01 0.46 7.99 -2.91 -0.02 0.44 16 16 C -0.02 -0.99 5.34 84.66 0.45 -0.54 16 17 N -0.94 -60.53 13.70 21.45 0.29 -60.24 16 18 Si 1.08 50.74 26.42 68.60 1.81 52.55 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.24 -9.77 5.57 99.48 0.55 -9.22 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.10 4.12 4.19 86.33 0.36 4.48 16 23 O -0.19 -6.54 9.85 -6.96 -0.07 -6.61 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.14 2.49 8.06 -2.38 -0.02 2.47 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.02 0.75 6.67 -2.38 -0.02 0.74 16 32 H 0.11 2.22 8.06 -2.39 -0.02 2.20 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 2.29 4.86 -2.39 -0.01 2.28 16 37 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 38 H 0.05 2.11 8.12 -2.38 -0.02 2.09 16 39 H 0.00 -0.07 6.93 -2.38 -0.02 -0.08 16 Total: -1.00 -71.79 321.94 1.76 -70.03 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.83 Total: 15.14 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 4.55 Total: -47.47 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -4.08 Total: -81.48 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.07 Total: -6.61 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 1.81 Total: 52.55 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.29 Total: -2.16 kcal Total: -71.79 1.76 -70.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895229896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.489 kcal (2) G-P(sol) polarization free energy of solvation -71.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds