Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35735 * 117.00180 * 2 1 4 4 C 1.41852 * 126.78646 * 180.23275 * 3 2 1 5 5 C 1.36665 * 103.80977 * 180.11695 * 4 3 2 6 6 C 1.47543 * 126.88233 * 179.97438 * 5 4 3 7 7 O 1.21577 * 119.99624 * 359.71325 * 6 5 4 8 8 N 1.34773 * 120.00298 * 179.70892 * 6 5 4 9 9 C 1.47423 * 125.64710 * 0.03390 * 8 6 5 10 10 C 1.54903 * 104.83345 * 155.83340 * 9 8 6 11 11 C 1.55160 * 101.58514 * 37.00430 * 10 9 8 12 12 H 1.09006 * 110.71536 * 83.03783 * 11 10 9 13 13 N 1.46490 * 110.72259 * 206.13520 * 11 10 9 14 14 C 1.36935 * 120.00121 * 204.99536 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.47020 * 125.64728 * 179.97438 * 8 6 5 23 23 O 1.34661 * 106.24092 * 359.66910 * 5 4 3 24 24 N 1.20871 * 111.63538 * 0.22523 * 23 5 4 25 25 H 1.09004 * 109.47575 * 300.00572 * 1 2 3 26 26 H 1.09004 * 109.47103 * 60.00560 * 1 2 3 27 27 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.07999 * 128.09759 * 0.02827 * 4 3 2 29 29 H 1.08994 * 110.36976 * 36.98820 * 9 8 6 30 30 H 1.09003 * 110.36333 * 274.66853 * 9 8 6 31 31 H 1.09000 * 111.00480 * 278.93284 * 10 9 8 32 32 H 1.09004 * 111.03841 * 155.09348 * 10 9 8 33 33 H 0.97000 * 120.00577 * 25.00135 * 13 11 10 34 34 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 35 35 H 1.08999 * 109.88183 * 61.68656 * 22 8 6 36 36 H 1.08992 * 109.88824 * 300.51994 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0046 5 6 3.5390 2.8137 0.0003 6 6 4.7784 3.6142 -0.0010 7 8 5.8602 3.0595 -0.0017 8 7 4.7113 4.9603 -0.0016 9 6 3.4720 5.7587 -0.0003 10 6 3.8794 7.1222 0.6115 11 6 5.3032 7.3139 0.0254 12 1 5.2531 7.7306 -0.9806 13 7 6.1126 8.1675 0.8984 14 6 7.1634 8.8762 0.3801 15 1 7.3951 8.8062 -0.6724 16 6 7.9307 9.6847 1.2074 17 7 7.6486 9.7697 2.4902 18 14 9.3637 10.6521 0.5001 19 1 10.5989 9.8309 0.5724 20 1 9.0788 10.9943 -0.9165 21 1 9.5526 11.9001 1.2825 22 6 5.8619 5.8755 -0.0023 23 8 2.2758 3.2802 -0.0004 24 7 1.4685 2.3806 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 4.2441 0.7262 -0.0093 29 1 2.7119 5.2784 0.6157 30 1 3.1067 5.8938 -1.0184 31 1 3.9089 7.0690 1.6998 32 1 3.2101 7.9159 0.2793 33 1 5.9043 8.2307 1.8437 34 1 6.9042 9.2676 2.8574 35 1 6.4543 5.7254 -0.9049 36 1 6.4763 5.6994 0.8805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968466979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = 22.108091 kcal Electronic energy + Delta-G solvation = -21605.972479 eV Core-core repulsion = 18095.316421 eV Total energy + Delta-G solvation = -3510.656058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.22027 -39.90992 -39.19540 -37.57860 -34.56081 -33.47333 -32.38595 -31.38025 -29.63779 -28.05040 -27.64407 -24.78547 -23.63831 -23.27567 -22.30271 -20.82173 -20.12027 -18.33674 -18.22160 -17.49491 -17.16166 -16.28704 -16.21638 -15.90185 -15.62581 -14.97488 -14.63287 -14.29306 -13.97652 -13.73090 -13.33895 -13.01046 -12.71938 -12.60663 -12.25874 -12.14336 -11.71720 -11.54781 -11.31733 -10.73560 -10.70767 -10.38854 -10.33857 -10.09752 -10.05420 -9.64638 -9.27449 -9.05699 -8.60859 -7.20999 -6.20006 -3.22979 0.56111 1.82312 2.32820 2.37703 2.90635 3.13103 3.49264 3.53450 3.67167 3.80072 4.40179 4.53823 4.59575 4.70213 4.75418 4.78921 4.92661 5.07763 5.12526 5.18660 5.39492 5.45592 5.61330 5.64147 5.79303 5.89946 6.14164 6.18806 6.27391 6.46510 6.56794 6.70428 7.37802 7.69853 7.72526 7.95468 8.65611 9.08394 9.95096 10.07365 11.27744 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048851 B = 0.003162 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.034981 B = 8851.890751 C = 9167.802716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.281 6.281 3 C 0.205 3.795 4 C -0.159 4.159 5 C -0.044 4.044 6 C 0.608 3.392 7 O -0.513 6.513 8 N -0.595 5.595 9 C 0.096 3.904 10 C -0.142 4.142 11 C 0.177 3.823 12 H 0.073 0.927 13 N -0.723 5.723 14 C -0.342 4.342 15 H 0.069 0.931 16 C -0.040 4.040 17 N -0.939 5.939 18 Si 1.083 2.917 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.082 3.918 23 O 0.117 5.883 24 N -0.394 5.394 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.190 0.810 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.371 0.629 34 H 0.256 0.744 35 H 0.066 0.934 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.011 -15.447 -5.817 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.008 3.992 4 C -0.182 4.182 5 C -0.110 4.110 6 C 0.393 3.607 7 O -0.389 6.389 8 N -0.328 5.328 9 C -0.027 4.027 10 C -0.181 4.181 11 C 0.065 3.935 12 H 0.091 0.909 13 N -0.363 5.363 14 C -0.473 4.473 15 H 0.087 0.913 16 C -0.238 4.238 17 N -0.584 5.584 18 Si 0.913 3.087 19 H -0.221 1.221 20 H -0.220 1.220 21 H -0.213 1.213 22 C -0.042 4.042 23 O 0.052 5.948 24 N -0.119 5.119 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.207 0.793 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.205 0.795 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.256 -14.587 -5.668 21.169 hybrid contribution -0.979 -1.666 -0.110 1.936 sum -15.235 -16.254 -5.777 23.015 Atomic orbital electron populations 1.23102 0.76582 1.04258 1.02494 1.86219 1.22759 1.20409 1.89376 1.21872 0.90611 0.85822 1.00942 1.22162 0.94429 0.94916 1.06727 1.24154 0.86935 0.93745 1.06199 1.16146 0.85041 0.80814 0.78721 1.90890 1.26514 1.70477 1.51053 1.48481 1.10563 1.03932 1.69806 1.22536 0.86439 0.92089 1.01642 1.23123 0.98620 0.95067 1.01286 1.21166 0.88699 0.88062 0.95599 0.90880 1.42395 1.35009 1.51711 1.07221 1.20096 1.08045 1.23749 0.95369 0.91349 1.25833 1.02940 0.99739 0.95265 1.70867 1.31156 1.44161 1.12176 0.83195 0.75043 0.76301 0.74117 1.22144 1.22005 1.21328 1.23410 0.87585 0.90635 1.02607 1.85041 1.11920 1.29367 1.68442 1.73980 1.16192 0.96734 1.24958 0.92098 0.92111 0.87490 0.79261 0.90094 0.90583 0.90544 0.89581 0.79547 0.93248 0.91516 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.95 10.57 -18.91 -0.20 -3.15 16 3 C 0.20 2.45 8.00 -16.72 -0.13 2.31 16 4 C -0.16 -1.92 10.97 -38.77 -0.43 -2.34 16 5 C -0.04 -0.58 7.06 -36.36 -0.26 -0.84 16 6 C 0.61 9.53 7.85 -12.47 -0.10 9.43 16 7 O -0.51 -9.57 17.24 5.30 0.09 -9.48 16 8 N -0.60 -9.07 3.33 -171.76 -0.57 -9.64 16 9 C 0.10 1.19 6.20 -2.53 -0.02 1.17 16 10 C -0.14 -2.01 6.71 -24.58 -0.17 -2.17 16 11 C 0.18 3.22 3.61 -66.10 -0.24 2.98 16 12 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 13 N -0.72 -16.91 5.15 -51.65 -0.27 -17.18 16 14 C -0.34 -9.15 9.96 -15.06 -0.15 -9.30 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 17 N -0.94 -28.20 13.70 55.49 0.76 -27.44 16 18 Si 1.08 25.25 29.92 -169.99 -5.09 20.17 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.08 1.47 6.62 -3.06 -0.02 1.45 16 23 O 0.12 1.46 8.55 15.50 0.13 1.60 16 24 N -0.39 -4.91 11.50 30.47 0.35 -4.55 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.08 0.90 6.27 -51.93 -0.33 0.58 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.37 8.97 6.59 -40.82 -0.27 8.70 16 34 H 0.26 7.53 6.77 -40.82 -0.28 7.25 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -31.97 312.98 -4.88 -36.85 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.29 Total: 5.33 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.51 Total: 2.78 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.27 Total: -58.81 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.02 Total: -11.03 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.09 Total: 20.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.97 -4.88 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968466979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.954 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds