Wall clock time and date at job start Tue Mar 31 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47523 * 89.99583 * 3 2 1 5 5 H 1.48500 * 109.47005 * 329.99475 * 3 2 1 6 6 H 1.48503 * 109.47244 * 209.99865 * 3 2 1 7 7 C 1.38806 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00534 * 18.60953 * 7 2 1 9 9 N 1.36944 * 119.99635 * 198.60542 * 7 2 1 10 10 C 1.46921 * 120.63205 * 30.94466 * 9 7 2 11 11 C 1.53190 * 108.77902 * 126.36664 * 10 9 7 12 12 C 1.53041 * 109.31457 * 54.63145 * 11 10 9 13 13 C 1.53042 * 109.53674 * 298.63815 * 12 11 10 14 14 H 1.08998 * 109.50313 * 301.41124 * 13 12 11 15 15 N 1.46503 * 109.49761 * 181.31401 * 13 12 11 16 16 C 1.34778 * 119.99973 * 155.00259 * 15 13 12 17 17 O 1.21695 * 120.00148 * 359.97438 * 16 15 13 18 18 C 1.46665 * 119.99763 * 180.02562 * 16 15 13 19 19 C 1.37928 * 126.21052 * 179.97438 * 18 16 15 20 20 C 1.39925 * 107.10475 * 180.02562 * 19 18 16 21 21 F 1.35104 * 126.07814 * 179.97438 * 20 19 18 22 22 C 1.35568 * 107.84693 * 0.02562 * 20 19 18 23 23 N 1.35753 * 108.83185 * 359.73229 * 22 20 19 24 24 H 0.96997 * 125.68318 * 180.28799 * 23 22 20 25 25 C 1.46931 * 120.62720 * 210.65916 * 9 7 2 26 26 H 0.97005 * 119.99681 * 174.94943 * 1 2 3 27 27 H 1.08999 * 109.58249 * 246.15007 * 10 9 7 28 28 H 1.09004 * 109.58528 * 6.57341 * 10 9 7 29 29 H 1.08993 * 109.50279 * 174.58569 * 11 10 9 30 30 H 1.08997 * 109.49599 * 294.68497 * 11 10 9 31 31 H 1.09002 * 109.46073 * 58.65150 * 12 11 10 32 32 H 1.08995 * 109.46094 * 178.63411 * 12 11 10 33 33 H 0.97001 * 120.00166 * 335.00039 * 15 13 12 34 34 H 1.07994 * 126.44843 * 359.96565 * 19 18 16 35 35 H 1.07998 * 125.58983 * 179.97438 * 22 20 19 36 36 H 1.09004 * 109.58785 * 353.41894 * 25 9 7 37 37 H 1.08996 * 109.58389 * 113.84608 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 1.4000 5 1 1.4476 2.6526 -0.7002 6 1 3.5477 1.4403 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.5127 -2.1131 -0.2975 9 7 3.3260 -1.2328 0.3789 10 6 3.8410 -0.2829 1.3744 11 6 4.5325 -1.0678 2.4935 12 6 5.5992 -1.9818 1.8862 13 6 4.9361 -2.9802 0.9344 14 1 4.1954 -3.5654 1.4792 15 7 5.9539 -3.8749 0.3776 16 6 5.6066 -5.1019 -0.0585 17 8 4.4477 -5.4669 0.0107 18 6 6.6256 -5.9978 -0.6154 19 6 6.4143 -7.2732 -1.0962 20 6 7.6530 -7.7610 -1.5271 21 9 7.8849 -8.9778 -2.0665 22 6 8.5792 -6.7960 -1.3062 23 7 7.9653 -5.7169 -0.7572 24 1 8.3990 -4.8867 -0.5050 25 6 4.2480 -2.2205 -0.1983 26 1 -0.4850 -0.8369 -0.0740 27 1 4.5582 0.3884 0.9020 28 1 3.0152 0.2949 1.7896 29 1 5.0024 -0.3725 3.1890 30 1 3.7956 -1.6711 3.0237 31 1 6.3221 -1.3802 1.3352 32 1 6.1094 -2.5236 2.6826 33 1 6.8777 -3.5842 0.3228 34 1 5.4707 -7.7971 -1.1323 35 1 9.6322 -6.8717 -1.5337 36 1 3.6906 -2.9209 -0.8203 37 1 4.9989 -1.7104 -0.8015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007980599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:44 Heat of formation + Delta-G solvation = -15.702590 kcal Electronic energy + Delta-G solvation = -21787.575953 eV Core-core repulsion = 18287.653090 eV Total energy + Delta-G solvation = -3499.922863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.72971 -41.54190 -39.42631 -37.58762 -34.62409 -32.69001 -31.15601 -30.80457 -30.21470 -28.58620 -25.06987 -23.89773 -22.14797 -21.80163 -20.91921 -20.46927 -19.92729 -18.91785 -17.32617 -16.34622 -16.07842 -15.97847 -15.64229 -15.20047 -14.97715 -14.74304 -14.19933 -13.95260 -13.80030 -13.63897 -13.54385 -13.31190 -12.91319 -12.42918 -12.15437 -11.94928 -11.62775 -11.17635 -10.96200 -10.69445 -10.21772 -10.06769 -9.84671 -9.64545 -9.24805 -9.17918 -9.08639 -8.59794 -8.45358 -7.06514 -6.23660 -3.35706 1.11432 2.16305 2.59170 3.00298 3.24818 3.36978 3.51436 3.67442 4.25836 4.56582 4.57105 4.71292 4.97149 4.99691 5.09363 5.20894 5.29629 5.37453 5.49065 5.70978 5.74019 5.85401 5.94853 6.10198 6.13974 6.24895 6.34391 6.37273 6.53022 6.57221 6.61897 6.70238 6.84163 6.88646 7.45626 8.04503 8.15600 8.45392 9.07521 9.58127 10.18988 11.14739 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.003751 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.403861 B = 7463.708152 C = 7864.197816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.344 4.344 8 H 0.066 0.934 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.092 0.908 15 N -0.721 5.721 16 C 0.584 3.416 17 O -0.514 6.514 18 C -0.018 4.018 19 C -0.133 4.133 20 C 0.003 3.997 21 F -0.128 7.128 22 C -0.004 4.004 23 N -0.528 5.528 24 H 0.425 0.575 25 C 0.142 3.858 26 H 0.264 0.736 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.389 0.611 34 H 0.160 0.840 35 H 0.182 0.818 36 H 0.064 0.936 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.294 -8.889 1.101 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.216 4.216 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.227 1.227 6 H -0.212 1.212 7 C -0.473 4.473 8 H 0.084 0.916 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.110 0.890 15 N -0.372 5.372 16 C 0.369 3.631 17 O -0.388 6.388 18 C -0.132 4.132 19 C -0.160 4.160 20 C -0.023 4.023 21 F -0.107 7.107 22 C -0.140 4.140 23 N -0.125 5.125 24 H 0.264 0.736 25 C 0.015 3.985 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.178 0.822 35 H 0.199 0.801 36 H 0.083 0.917 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 20.229 -7.387 1.237 21.571 hybrid contribution 1.069 -1.481 -0.129 1.831 sum 21.298 -8.867 1.107 23.097 Atomic orbital electron populations 1.70886 1.06030 1.30090 1.49078 1.26258 0.96635 1.01231 0.97518 0.83714 0.74608 0.75659 0.75912 1.22140 1.22726 1.21248 1.20270 0.85340 0.95177 1.46542 0.91628 1.44274 1.07272 1.36566 1.44268 1.21448 0.97272 0.92396 0.89417 1.22006 0.97645 0.98622 0.98915 1.21682 0.98423 0.97235 0.98039 1.21713 0.89559 0.90329 0.96381 0.89017 1.45998 1.11916 1.15155 1.64082 1.16940 0.87048 0.80925 0.78180 1.90921 1.18083 1.74862 1.54921 1.20481 0.83393 0.97431 1.11928 1.21353 0.98361 0.93830 1.02459 1.16488 0.94099 0.83449 1.08258 1.91453 1.94913 1.39934 1.84362 1.21726 0.98972 0.87686 1.05657 1.41728 1.07348 1.14982 1.48481 0.73633 1.21150 0.92716 0.91826 0.92850 0.92589 0.95539 0.90566 0.92078 0.91496 0.92066 0.92453 0.77859 0.82189 0.80084 0.91711 0.96223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.90 13.70 55.49 0.76 -28.14 16 2 C -0.01 -0.44 5.24 -17.43 -0.09 -0.53 16 3 Si 1.07 26.27 24.73 -169.99 -4.20 22.07 16 4 H -0.29 -6.68 6.56 56.52 0.37 -6.31 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -6.68 6.80 56.52 0.38 -6.30 16 7 C -0.34 -9.89 9.88 -15.06 -0.15 -10.04 16 8 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 9 N -0.60 -14.41 2.73 -172.58 -0.47 -14.89 16 10 C 0.12 2.51 4.21 -3.71 -0.02 2.50 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.12 -1.59 5.36 -26.69 -0.14 -1.74 16 13 C 0.13 2.05 2.59 -68.03 -0.18 1.87 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.72 -9.11 5.08 -55.21 -0.28 -9.39 16 16 C 0.58 8.58 7.75 -12.86 -0.10 8.48 16 17 O -0.51 -10.02 16.54 5.19 0.09 -9.94 16 18 C -0.02 -0.21 7.05 -81.98 -0.58 -0.79 16 19 C -0.13 -1.64 10.66 -39.06 -0.42 -2.05 16 20 C 0.00 0.03 7.98 -39.90 -0.32 -0.29 16 21 F -0.13 -1.48 17.32 2.25 0.04 -1.44 16 22 C 0.00 -0.03 11.90 -16.77 -0.20 -0.23 16 23 N -0.53 -3.92 6.00 -9.31 -0.06 -3.98 16 24 H 0.42 1.66 8.19 -40.82 -0.33 1.33 16 25 C 0.14 2.91 6.06 -3.93 -0.02 2.88 16 26 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 27 H 0.03 0.53 7.10 -51.93 -0.37 0.16 16 28 H 0.08 1.75 4.76 -51.93 -0.25 1.50 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.39 3.31 7.73 -40.82 -0.32 2.99 16 34 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -34.97 308.23 -6.51 -41.48 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.65 Total: 1.85 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.37 Total: -2.27 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.05 Total: -56.39 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -4.20 Total: 22.07 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.97 -6.51 -41.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007980599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.773 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds