Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48499 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99662 * 3 2 1 6 6 H 1.48507 * 109.46897 * 59.99838 * 3 2 1 7 7 C 1.38805 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00251 * 197.36917 * 7 2 1 9 9 N 1.36940 * 119.99970 * 17.36471 * 7 2 1 10 10 C 1.46930 * 120.63024 * 207.68147 * 9 7 2 11 11 C 1.53198 * 108.77212 * 233.60764 * 10 9 7 12 12 C 1.53032 * 109.31502 * 305.36562 * 11 10 9 13 13 C 1.53045 * 109.53804 * 61.36383 * 12 11 10 14 14 H 1.09000 * 109.49415 * 58.62478 * 13 12 11 15 15 N 1.46502 * 109.49896 * 178.68266 * 13 12 11 16 16 C 1.34772 * 120.00017 * 205.21606 * 15 13 12 17 17 O 1.21694 * 120.00176 * 359.71909 * 16 15 13 18 18 C 1.46661 * 119.99803 * 179.72715 * 16 15 13 19 19 C 1.37928 * 126.21375 * 179.97438 * 18 16 15 20 20 C 1.39921 * 107.11224 * 179.97438 * 19 18 16 21 21 F 1.35105 * 126.08185 * 180.02562 * 20 19 18 22 22 C 1.35573 * 107.84193 * 0.02562 * 20 19 18 23 23 N 1.35750 * 108.82841 * 359.72862 * 22 20 19 24 24 H 0.96997 * 125.67429 * 180.29012 * 23 22 20 25 25 C 1.46929 * 120.60158 * 27.70286 * 9 7 2 26 26 H 0.97000 * 120.00066 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58737 * 113.82583 * 10 9 7 28 28 H 1.09003 * 109.70567 * 353.46119 * 10 9 7 29 29 H 1.09002 * 109.49445 * 185.41071 * 11 10 9 30 30 H 1.09002 * 109.52332 * 65.33503 * 11 10 9 31 31 H 1.08999 * 109.46190 * 301.34413 * 12 11 10 32 32 H 1.08996 * 109.46084 * 181.38647 * 12 11 10 33 33 H 0.97003 * 120.00044 * 24.93199 * 15 13 12 34 34 H 1.08002 * 126.44459 * 359.97391 * 19 18 16 35 35 H 1.08000 * 125.58559 * 180.02562 * 22 20 19 36 36 H 1.08996 * 109.62142 * 6.62174 * 25 9 7 37 37 H 1.09000 * 109.56298 * 246.18956 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2798 9 7 1.3724 -2.3612 -0.3529 10 6 1.8194 -3.6546 0.1818 11 6 2.0748 -4.6101 -0.9882 12 6 0.8193 -4.6902 -1.8595 13 6 0.5013 -3.3051 -2.4276 14 1 1.3497 -2.9477 -3.0111 15 7 -0.6824 -3.3889 -3.2868 16 6 -0.8663 -2.4862 -4.2704 17 8 -0.0518 -1.5984 -4.4417 18 6 -2.0482 -2.5737 -5.1344 19 6 -2.3628 -1.7230 -6.1735 20 6 -3.5687 -2.1723 -6.7227 21 9 -4.2251 -1.6155 -7.7641 22 6 -3.9615 -3.2657 -6.0240 23 7 -3.0418 -3.5228 -5.0592 24 1 -3.0798 -4.2528 -4.4216 25 6 0.2283 -2.3343 -1.2744 26 1 -0.4850 0.8400 -0.0004 27 1 1.0469 -4.0688 0.8298 28 1 2.7394 -3.5191 0.7504 29 1 2.3141 -5.6012 -0.6028 30 1 2.9088 -4.2406 -1.5848 31 1 -0.0198 -5.0367 -1.2564 32 1 0.9900 -5.3883 -2.6790 33 1 -1.3316 -4.0966 -3.1504 34 1 -1.7866 -0.8704 -6.5015 35 1 -4.8567 -3.8411 -6.2083 36 1 0.0993 -1.3262 -1.6683 37 1 -0.6740 -2.6403 -0.7451 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007980603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -15.645278 kcal Electronic energy + Delta-G solvation = -22005.527098 eV Core-core repulsion = 18505.606720 eV Total energy + Delta-G solvation = -3499.920377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.58127 -41.34086 -39.11884 -37.25006 -34.27399 -32.75827 -30.98231 -30.21142 -29.80203 -28.27319 -25.30595 -23.55287 -22.21357 -21.65114 -20.69077 -20.23821 -19.66529 -18.63406 -16.81086 -16.13621 -15.80489 -15.72672 -15.44440 -14.98631 -14.67077 -14.44397 -14.06662 -13.73436 -13.58492 -13.46296 -13.31954 -12.97291 -12.45784 -12.36287 -11.98175 -11.75933 -11.05196 -10.83653 -10.73086 -10.54863 -10.26726 -10.10111 -9.97038 -9.68662 -9.56761 -9.03769 -8.72733 -8.45242 -8.36549 -6.68953 -5.77496 -3.20887 1.32900 2.34283 2.78037 3.26821 3.43109 3.50975 3.52233 3.52518 4.44449 4.54041 4.72927 4.93511 5.15721 5.27283 5.35103 5.45654 5.50025 5.57911 5.62485 5.89003 6.01089 6.05847 6.24636 6.32918 6.37518 6.40569 6.62233 6.69135 6.72973 6.80878 6.91074 7.04141 7.24068 7.67987 7.74270 7.83410 8.42097 8.47291 9.20857 9.84851 10.38952 11.30712 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.004863 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.335192 B = 5756.334866 C = 6924.213517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.117 3.883 14 H 0.086 0.914 15 N -0.718 5.718 16 C 0.582 3.418 17 O -0.512 6.512 18 C -0.012 4.012 19 C -0.136 4.136 20 C 0.002 3.998 21 F -0.129 7.129 22 C -0.008 4.008 23 N -0.528 5.528 24 H 0.425 0.575 25 C 0.166 3.834 26 H 0.254 0.746 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.386 0.614 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.096 0.904 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -12.133 -9.194 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.012 3.988 14 H 0.104 0.896 15 N -0.368 5.368 16 C 0.367 3.633 17 O -0.386 6.386 18 C -0.127 4.127 19 C -0.163 4.163 20 C -0.024 4.024 21 F -0.108 7.108 22 C -0.144 4.144 23 N -0.125 5.125 24 H 0.263 0.737 25 C 0.039 3.961 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.218 0.782 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.114 0.886 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.481 -11.411 -9.180 16.015 hybrid contribution -0.312 0.230 0.120 0.406 sum -6.792 -11.181 -9.060 15.913 Atomic orbital electron populations 1.70015 1.05388 1.25551 1.53360 1.25030 0.95263 0.98540 1.00348 0.86241 0.79420 0.83907 0.77300 1.20158 1.21319 1.21740 1.19197 0.92809 0.84778 1.41976 0.91476 1.43969 1.36045 1.01679 1.49393 1.20958 0.97787 0.86842 0.92846 1.22006 0.96901 0.99414 0.98764 1.21681 0.99051 0.95886 0.98784 1.22070 0.86659 0.97129 0.92950 0.89615 1.45972 1.26588 1.30808 1.33433 1.16899 0.84028 0.82493 0.79837 1.90915 1.43711 1.33548 1.70410 1.20573 0.93825 0.95302 1.02991 1.21333 0.96670 1.01685 0.96635 1.16483 0.95484 0.98030 0.92366 1.91441 1.80055 1.84604 1.54707 1.21682 0.97587 1.00909 0.94207 1.41728 1.18302 1.24764 1.27713 0.73679 1.21101 0.88793 0.99003 0.87188 0.93640 0.96432 0.92537 0.92559 0.92000 0.92294 0.93068 0.78190 0.82267 0.80212 0.88558 0.96513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 11.19 55.49 0.62 -26.14 16 2 C 0.01 0.21 4.91 -17.43 -0.09 0.12 16 3 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.26 -7.20 9.59 -15.06 -0.14 -7.35 16 8 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 9 N -0.59 -14.72 3.00 -172.31 -0.52 -15.23 16 10 C 0.14 2.87 6.51 -3.71 -0.02 2.85 16 11 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 12 C -0.12 -1.75 5.35 -26.69 -0.14 -1.90 16 13 C 0.12 2.18 2.60 -67.81 -0.18 2.01 16 14 H 0.09 1.84 7.57 -51.93 -0.39 1.44 16 15 N -0.72 -10.98 5.08 -55.00 -0.28 -11.25 16 16 C 0.58 10.10 7.76 -12.86 -0.10 10.00 16 17 O -0.51 -11.38 16.54 5.19 0.09 -11.29 16 18 C -0.01 -0.17 7.05 -81.99 -0.58 -0.75 16 19 C -0.14 -1.96 10.66 -39.07 -0.42 -2.37 16 20 C 0.00 0.03 7.98 -39.90 -0.32 -0.29 16 21 F -0.13 -1.69 17.32 2.25 0.04 -1.65 16 22 C -0.01 -0.07 11.90 -16.77 -0.20 -0.27 16 23 N -0.53 -4.98 6.00 -9.31 -0.06 -5.03 16 24 H 0.42 2.51 8.19 -40.82 -0.33 2.18 16 25 C 0.17 3.96 4.89 -3.71 -0.02 3.95 16 26 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.39 4.27 7.73 -40.82 -0.32 3.96 16 34 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.10 2.74 6.04 -51.93 -0.31 2.42 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -34.11 313.95 -7.47 -41.58 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.70 Total: 3.12 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.37 Total: 3.71 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.23 Total: -57.66 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.11 -7.47 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007980603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.938 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds