Wall clock time and date at job start Tue Mar 31 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35360 * 116.99879 * 2 1 4 4 N 1.30550 * 125.44781 * 180.29685 * 3 2 1 5 5 C 1.36325 * 108.38461 * 180.16079 * 4 3 2 6 6 C 1.47362 * 126.41236 * 179.82619 * 5 4 3 7 7 O 1.21621 * 120.00383 * 179.69115 * 6 5 4 8 8 N 1.34778 * 120.00208 * 359.68748 * 6 5 4 9 9 C 1.46501 * 120.00102 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.88655 * 31.12111 * 9 8 6 11 11 C 1.55160 * 111.00374 * 155.00258 * 9 8 6 12 12 C 1.54330 * 102.94295 * 82.57227 * 11 9 8 13 13 N 1.47022 * 107.27028 * 22.19363 * 12 11 9 14 14 C 1.36932 * 125.64931 * 181.02631 * 13 12 11 15 15 H 1.08000 * 120.00004 * 189.81967 * 14 13 12 16 16 C 1.38810 * 120.00208 * 9.81570 * 14 13 12 17 17 N 1.31614 * 120.00304 * 208.94358 * 16 14 13 18 18 Si 1.86803 * 119.99768 * 28.94358 * 16 14 13 19 19 H 1.48500 * 109.46945 * 275.30037 * 18 16 14 20 20 H 1.48502 * 109.47262 * 35.29883 * 18 16 14 21 21 H 1.48497 * 109.47172 * 155.30283 * 18 16 14 22 22 C 1.47427 * 108.70226 * 1.28562 * 13 12 11 23 23 C 1.35913 * 107.17485 * 359.56272 * 5 4 3 24 24 O 1.34204 * 125.44564 * 359.96987 * 3 2 1 25 25 H 1.09001 * 109.47130 * 60.00224 * 1 2 3 26 26 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47548 * 300.00132 * 1 2 3 28 28 H 0.97000 * 119.99615 * 0.02562 * 8 6 5 29 29 H 1.08997 * 110.71705 * 324.21452 * 11 9 8 30 30 H 1.08994 * 110.87198 * 201.00707 * 11 9 8 31 31 H 1.09005 * 109.88315 * 262.78055 * 12 11 9 32 32 H 1.08998 * 110.01091 * 141.67921 * 12 11 9 33 33 H 0.97003 * 119.99936 * 4.81989 * 17 16 14 34 34 H 1.09003 * 110.36699 * 94.48441 * 22 13 12 35 35 H 1.09010 * 110.36605 * 216.80488 * 22 13 12 36 36 H 1.07999 * 126.46167 * 180.22076 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 7 3.3348 1.3979 -0.0055 5 6 3.5700 2.7407 0.0002 6 6 4.8891 3.3977 0.0005 7 8 4.9639 4.6116 0.0003 8 7 6.0127 2.6533 0.0012 9 6 7.3241 3.3065 0.0021 10 1 7.2829 4.2600 0.5285 11 6 8.4068 2.3793 0.6148 12 6 8.7955 1.4712 -0.5710 13 7 8.4262 2.1816 -1.8041 14 6 8.5881 1.7061 -3.0780 15 1 8.4343 2.3614 -3.9226 16 6 8.9498 0.3819 -3.2839 17 7 9.6398 0.0468 -4.3534 18 14 8.4572 -0.9246 -2.0429 19 1 9.4553 -0.9648 -0.9440 20 1 7.1200 -0.5987 -1.4854 21 1 8.4050 -2.2489 -2.7127 22 6 7.8586 3.4932 -1.4422 23 6 2.3602 3.3601 -0.0005 24 8 1.4226 2.3959 -0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 5.9531 1.6852 0.0010 29 1 7.9918 1.7896 1.4321 30 1 9.2656 2.9575 0.9555 31 1 8.2521 0.5283 -0.5095 32 1 9.8689 1.2819 -0.5596 33 1 9.9557 0.7333 -4.9615 34 1 8.6319 4.2610 -1.4667 35 1 7.0432 3.7530 -2.1174 36 1 2.1848 4.4257 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015413389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:36 Heat of formation + Delta-G solvation = -4.019618 kcal Electronic energy + Delta-G solvation = -22080.387685 eV Core-core repulsion = 18568.598644 eV Total energy + Delta-G solvation = -3511.789040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.60807 -39.65167 -39.01353 -37.49703 -35.08295 -33.80328 -32.03361 -30.33477 -29.41766 -28.00444 -27.73820 -24.68845 -23.58297 -22.60235 -21.03246 -20.68426 -19.76904 -19.13867 -17.71251 -17.53416 -17.20698 -16.58229 -15.98146 -15.58922 -15.46506 -15.14139 -14.58122 -14.29057 -13.97750 -13.59604 -13.25710 -12.83287 -12.64506 -12.51987 -12.24808 -11.72037 -11.22159 -11.10323 -11.01969 -10.98302 -10.90542 -10.83036 -10.23770 -10.07393 -9.54371 -9.11944 -8.95930 -8.73931 -8.37265 -7.00670 -6.30943 -3.11089 0.98059 1.70465 1.94410 2.54123 3.24057 3.38307 3.48257 3.60199 3.76375 4.39236 4.52956 4.61952 4.69019 4.72899 4.90752 5.00344 5.04575 5.10983 5.33004 5.35966 5.47427 5.58480 5.61954 5.86756 6.10388 6.17993 6.29187 6.40421 6.55590 6.59086 6.78198 6.87259 7.32606 7.72772 7.79899 8.31379 8.40141 9.08091 9.64155 10.31085 11.18460 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.005324 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.895505 B = 5257.812226 C = 6260.650752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.379 3.621 4 N -0.451 5.451 5 C -0.041 4.041 6 C 0.603 3.397 7 O -0.542 6.542 8 N -0.686 5.686 9 C 0.123 3.877 10 H 0.100 0.900 11 C -0.137 4.137 12 C 0.116 3.884 13 N -0.607 5.607 14 C -0.329 4.329 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.914 5.914 18 Si 1.052 2.948 19 H -0.294 1.294 20 H -0.290 1.290 21 H -0.300 1.300 22 C 0.125 3.875 23 C -0.002 4.002 24 O -0.227 6.227 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.412 0.588 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 3.815 13.049 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.133 3.867 4 N -0.196 5.196 5 C -0.160 4.160 6 C 0.388 3.612 7 O -0.421 6.421 8 N -0.335 5.335 9 C 0.018 3.982 10 H 0.118 0.882 11 C -0.175 4.175 12 C -0.009 4.009 13 N -0.335 5.335 14 C -0.456 4.456 15 H 0.094 0.906 16 C -0.214 4.214 17 N -0.554 5.554 18 Si 0.885 3.115 19 H -0.222 1.222 20 H -0.218 1.218 21 H -0.228 1.228 22 C -0.002 4.002 23 C -0.074 4.074 24 O -0.118 6.118 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.248 0.752 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -17.395 2.277 13.220 21.967 hybrid contribution -0.947 1.579 -0.390 1.882 sum -18.342 3.856 12.830 22.713 Atomic orbital electron populations 1.23293 0.75228 1.05644 1.02911 1.86414 1.23556 1.15812 1.89288 1.23376 0.85610 0.79526 0.98180 1.71173 1.09709 1.15776 1.22940 1.21753 0.96008 0.88322 1.09895 1.16597 0.81935 0.85932 0.76726 1.90806 1.86748 1.12594 1.51917 1.45693 1.04900 1.11117 1.71825 1.22321 0.80987 0.96355 0.98560 0.88247 1.22907 0.98112 0.98452 0.98040 1.21659 0.98675 0.94489 0.86109 1.44813 1.72150 1.14753 1.01784 1.20000 1.47188 0.96589 0.81831 0.90560 1.25735 0.97748 0.96665 1.01251 1.70891 1.32168 1.36695 1.15660 0.84001 0.76416 0.76313 0.74750 1.22221 1.21815 1.22806 1.22067 0.95857 0.89659 0.92614 1.24926 0.84894 0.93713 1.03844 1.84373 1.39561 1.15879 1.72017 0.91395 0.86311 0.91488 0.75169 0.90759 0.89635 0.95677 0.93968 0.92658 0.94491 0.93378 0.74746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.73 101.05 1.08 1.22 16 2 O -0.24 -2.72 10.55 -41.00 -0.43 -3.15 16 3 C 0.38 5.01 8.98 52.22 0.47 5.48 16 4 N -0.45 -7.23 11.10 -11.72 -0.13 -7.36 16 5 C -0.04 -0.62 6.99 -82.99 -0.58 -1.20 16 6 C 0.60 10.30 7.81 -12.55 -0.10 10.20 16 7 O -0.54 -9.93 16.53 5.26 0.09 -9.84 16 8 N -0.69 -12.11 5.19 -52.70 -0.27 -12.39 16 9 C 0.12 2.14 3.43 -65.66 -0.23 1.92 16 10 H 0.10 1.59 7.54 -51.93 -0.39 1.19 16 11 C -0.14 -2.24 6.55 -24.89 -0.16 -2.41 16 12 C 0.12 2.52 4.99 -3.06 -0.02 2.51 16 13 N -0.61 -15.17 3.29 -169.92 -0.56 -15.72 16 14 C -0.33 -9.66 10.41 -15.06 -0.16 -9.82 16 15 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 16 C -0.01 -0.39 5.41 -17.43 -0.09 -0.49 16 17 N -0.91 -29.09 13.70 55.49 0.76 -28.33 16 18 Si 1.05 27.26 24.74 -169.99 -4.21 23.06 16 19 H -0.29 -7.13 6.74 56.52 0.38 -6.75 16 20 H -0.29 -7.23 6.87 56.52 0.39 -6.85 16 21 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 22 C 0.12 2.64 6.95 -2.41 -0.02 2.62 16 23 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 24 O -0.23 -2.54 10.20 -17.77 -0.18 -2.72 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.41 7.54 8.39 -40.82 -0.34 7.19 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.03 0.59 3.71 -51.93 -0.19 0.40 16 32 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 33 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.24 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -35.63 309.66 -4.04 -39.67 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.33 Total: 1.73 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 0.56 Total: 10.38 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.20 Total: -63.80 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.53 Total: -15.71 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.21 Total: 23.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.63 -4.04 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015413389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.654 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds