Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35360 * 116.99879 * 2 1 4 4 N 1.30550 * 125.44781 * 180.29685 * 3 2 1 5 5 C 1.36325 * 108.38461 * 180.16079 * 4 3 2 6 6 C 1.47362 * 126.41236 * 179.82619 * 5 4 3 7 7 O 1.21621 * 120.00383 * 179.69115 * 6 5 4 8 8 N 1.34778 * 120.00208 * 359.68748 * 6 5 4 9 9 C 1.46501 * 120.00102 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.88655 * 31.12111 * 9 8 6 11 11 C 1.55160 * 111.00374 * 155.00258 * 9 8 6 12 12 C 1.54330 * 102.94295 * 82.57227 * 11 9 8 13 13 N 1.47022 * 107.27028 * 22.19363 * 12 11 9 14 14 C 1.36932 * 125.64931 * 181.02631 * 13 12 11 15 15 H 1.08000 * 120.00004 * 189.81967 * 14 13 12 16 16 C 1.38810 * 120.00208 * 9.81570 * 14 13 12 17 17 N 1.31614 * 120.00304 * 208.94358 * 16 14 13 18 18 Si 1.86803 * 119.99768 * 28.94358 * 16 14 13 19 19 H 1.48500 * 109.46945 * 275.30037 * 18 16 14 20 20 H 1.48502 * 109.47262 * 35.29883 * 18 16 14 21 21 H 1.48497 * 109.47172 * 155.30283 * 18 16 14 22 22 C 1.47427 * 108.70226 * 1.28562 * 13 12 11 23 23 C 1.35913 * 107.17485 * 359.56272 * 5 4 3 24 24 O 1.34204 * 125.44564 * 359.96987 * 3 2 1 25 25 H 1.09001 * 109.47130 * 60.00224 * 1 2 3 26 26 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47548 * 300.00132 * 1 2 3 28 28 H 0.97000 * 119.99615 * 0.02562 * 8 6 5 29 29 H 1.08997 * 110.71705 * 324.21452 * 11 9 8 30 30 H 1.08994 * 110.87198 * 201.00707 * 11 9 8 31 31 H 1.09005 * 109.88315 * 262.78055 * 12 11 9 32 32 H 1.08998 * 110.01091 * 141.67921 * 12 11 9 33 33 H 0.97003 * 119.99936 * 4.81989 * 17 16 14 34 34 H 1.09003 * 110.36699 * 94.48441 * 22 13 12 35 35 H 1.09010 * 110.36605 * 216.80488 * 22 13 12 36 36 H 1.07999 * 126.46167 * 180.22076 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 7 3.3348 1.3979 -0.0055 5 6 3.5700 2.7407 0.0002 6 6 4.8891 3.3977 0.0005 7 8 4.9639 4.6116 0.0003 8 7 6.0127 2.6533 0.0012 9 6 7.3241 3.3065 0.0021 10 1 7.2829 4.2600 0.5285 11 6 8.4068 2.3793 0.6148 12 6 8.7955 1.4712 -0.5710 13 7 8.4262 2.1816 -1.8041 14 6 8.5881 1.7061 -3.0780 15 1 8.4343 2.3614 -3.9226 16 6 8.9498 0.3819 -3.2839 17 7 9.6398 0.0468 -4.3534 18 14 8.4572 -0.9246 -2.0429 19 1 9.4553 -0.9648 -0.9440 20 1 7.1200 -0.5987 -1.4854 21 1 8.4050 -2.2489 -2.7127 22 6 7.8586 3.4932 -1.4422 23 6 2.3602 3.3601 -0.0005 24 8 1.4226 2.3959 -0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 5.9531 1.6852 0.0010 29 1 7.9918 1.7896 1.4321 30 1 9.2656 2.9575 0.9555 31 1 8.2521 0.5283 -0.5095 32 1 9.8689 1.2819 -0.5596 33 1 9.9557 0.7333 -4.9615 34 1 8.6319 4.2610 -1.4667 35 1 7.0432 3.7530 -2.1174 36 1 2.1848 4.4257 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015413389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = -35.898257 kcal Electronic energy + Delta-G solvation = -22081.770046 eV Core-core repulsion = 18568.598644 eV Total energy + Delta-G solvation = -3513.171402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.56846 -40.98461 -39.82609 -39.05950 -36.11691 -35.51654 -33.96831 -31.48571 -31.00356 -29.60941 -28.31878 -26.24035 -25.15864 -23.56763 -22.50326 -22.16539 -21.29133 -20.18868 -19.49080 -18.61177 -18.46875 -17.48365 -17.40491 -16.98812 -16.40550 -16.26895 -16.00353 -15.75263 -15.45161 -15.21166 -14.75368 -14.45094 -14.10652 -13.39928 -13.11042 -13.06211 -12.98887 -12.83168 -12.63777 -12.36541 -12.10700 -11.96831 -11.91145 -11.69169 -11.37822 -11.13025 -10.60499 -10.25401 -9.78752 -9.09288 -8.69251 -5.40315 -0.00427 0.83550 0.88797 1.39743 1.53096 1.69881 1.71760 2.05062 2.18331 2.53721 2.99631 3.31650 3.37797 3.63833 3.73010 3.85527 4.10169 4.17048 4.20023 4.24290 4.35590 4.40226 4.59036 4.63316 4.64978 4.77631 4.87579 4.89533 4.95132 5.17509 5.44657 5.57585 5.58827 6.10455 6.26961 6.53599 6.82006 7.01045 7.47012 8.12683 8.82022 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.005324 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.895505 B = 5257.812226 C = 6260.650752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.383 3.617 4 N -0.492 5.492 5 C -0.081 4.081 6 C 0.605 3.395 7 O -0.560 6.560 8 N -0.693 5.693 9 C 0.135 3.865 10 H 0.123 0.877 11 C -0.119 4.119 12 C 0.105 3.895 13 N -0.626 5.626 14 C -0.323 4.323 15 H 0.040 0.960 16 C -0.067 4.067 17 N -0.949 5.949 18 Si 1.098 2.902 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.309 1.309 22 C 0.120 3.880 23 C 0.035 3.965 24 O -0.213 6.213 25 H 0.075 0.925 26 H 0.145 0.855 27 H 0.081 0.919 28 H 0.409 0.591 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.020 0.980 32 H 0.034 0.966 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.024 0.976 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.811 4.065 15.915 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.136 3.864 4 N -0.238 5.238 5 C -0.199 4.199 6 C 0.391 3.609 7 O -0.440 6.440 8 N -0.342 5.342 9 C 0.030 3.970 10 H 0.140 0.860 11 C -0.156 4.156 12 C -0.019 4.019 13 N -0.354 5.354 14 C -0.451 4.451 15 H 0.058 0.942 16 C -0.262 4.262 17 N -0.592 5.592 18 Si 0.926 3.074 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.237 1.237 22 C -0.006 4.006 23 C -0.038 4.038 24 O -0.103 6.103 25 H 0.094 0.906 26 H 0.163 0.837 27 H 0.100 0.900 28 H 0.244 0.756 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -19.264 2.558 16.126 25.252 hybrid contribution -0.500 1.598 -1.358 2.156 sum -19.764 4.156 14.767 25.019 Atomic orbital electron populations 1.23717 0.72488 1.07778 1.04002 1.86435 1.26314 1.14908 1.88988 1.23397 0.85379 0.80418 0.97213 1.71037 1.11522 1.16535 1.24739 1.21578 0.96142 0.88645 1.13549 1.16827 0.82515 0.85758 0.75768 1.90782 1.87198 1.13185 1.52810 1.45762 1.05220 1.10960 1.72226 1.22237 0.81286 0.97789 0.95720 0.85969 1.22910 0.98733 0.97666 0.96339 1.21857 0.98002 0.95368 0.86708 1.44859 1.72795 1.16355 1.01358 1.19865 1.45733 0.96189 0.83314 0.94197 1.26931 0.97713 0.98995 1.02554 1.70992 1.34855 1.36310 1.17032 0.83389 0.77337 0.73180 0.73518 1.19103 1.20413 1.23739 1.22211 0.95378 0.88088 0.94913 1.25608 0.83682 0.94810 0.99719 1.84423 1.38982 1.15396 1.71538 0.90632 0.83729 0.90041 0.75600 0.87718 0.86700 0.96245 0.94842 0.94130 0.93497 0.95801 0.71214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.73 113.37 1.22 1.34 16 2 O -0.26 -5.35 10.55 -64.30 -0.68 -6.03 16 3 C 0.38 9.49 8.98 130.43 1.17 10.66 16 4 N -0.49 -15.29 11.10 -419.39 -4.65 -19.94 16 5 C -0.08 -2.35 6.99 40.31 0.28 -2.06 16 6 C 0.60 19.82 7.81 86.64 0.68 20.50 16 7 O -0.56 -19.57 16.53 -4.10 -0.07 -19.64 16 8 N -0.69 -23.38 5.19 -438.90 -2.28 -25.66 16 9 C 0.14 4.38 3.43 46.46 0.16 4.54 16 10 H 0.12 3.49 7.54 -2.39 -0.02 3.47 16 11 C -0.12 -3.45 6.55 31.79 0.21 -3.24 16 12 C 0.10 4.37 4.99 86.73 0.43 4.80 16 13 N -0.63 -31.22 3.29 -691.52 -2.27 -33.49 16 14 C -0.32 -19.50 10.41 84.03 0.87 -18.63 16 15 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 16 C -0.07 -4.12 5.41 84.86 0.46 -3.66 16 17 N -0.95 -62.44 13.70 21.65 0.30 -62.14 16 18 Si 1.10 55.39 24.74 68.60 1.70 57.09 16 19 H -0.27 -12.02 6.74 99.48 0.67 -11.35 16 20 H -0.28 -13.25 6.87 99.48 0.68 -12.57 16 21 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 22 C 0.12 5.02 6.95 86.93 0.60 5.62 16 23 C 0.03 0.70 11.93 67.28 0.80 1.50 16 24 O -0.21 -4.20 10.20 18.84 0.19 -4.01 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.41 14.39 8.39 -92.71 -0.78 13.61 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.02 0.86 3.71 -2.38 -0.01 0.86 16 32 H 0.03 1.46 8.00 -2.39 -0.02 1.44 16 33 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.27 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -80.36 309.66 -0.63 -81.00 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.24 Total: 11.45 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 6.89 Total: 21.36 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -8.91 Total: -141.23 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.55 Total: -29.67 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 1.70 Total: 57.09 kcal Total: -80.36 -0.63 -81.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015413389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.099 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds