Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35735 * 116.99805 * 2 1 4 4 C 1.41851 * 126.78440 * 180.02562 * 3 2 1 5 5 C 1.36666 * 103.81151 * 180.02562 * 4 3 2 6 6 C 1.47537 * 126.87672 * 179.97438 * 5 4 3 7 7 O 1.21578 * 120.00373 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99581 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64872 * 359.69193 * 8 6 5 10 10 C 1.54330 * 107.26383 * 178.85090 * 9 8 6 11 11 C 1.55158 * 103.02053 * 338.14341 * 10 9 8 12 12 H 1.09003 * 111.00180 * 277.23007 * 11 10 9 13 13 N 1.46504 * 111.00483 * 153.38260 * 11 10 9 14 14 C 1.36940 * 120.00002 * 161.34829 * 13 11 10 15 15 H 1.07995 * 119.99993 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99685 * 179.97438 * 14 13 11 17 17 N 1.31622 * 120.00000 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46994 * 89.99951 * 18 16 14 20 20 H 1.48504 * 109.47149 * 210.00214 * 18 16 14 21 21 H 1.48505 * 109.47008 * 329.99977 * 18 16 14 22 22 C 1.47425 * 125.64674 * 180.02562 * 8 6 5 23 23 O 1.34664 * 106.23924 * 0.02562 * 5 4 3 24 24 N 1.20874 * 111.63103 * 359.70253 * 23 5 4 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99679 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99735 * 1 2 3 28 28 H 1.07997 * 128.09338 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.88479 * 298.39815 * 9 8 6 30 30 H 1.09003 * 109.87948 * 59.56185 * 9 8 6 31 31 H 1.08999 * 110.84904 * 219.67936 * 10 9 8 32 32 H 1.08994 * 110.51486 * 96.45513 * 10 9 8 33 33 H 0.96997 * 119.99680 * 341.34914 * 13 11 10 34 34 H 0.97000 * 119.99643 * 179.97438 * 17 16 14 35 35 H 1.09003 * 110.36502 * 322.92557 * 22 8 6 36 36 H 1.09001 * 110.36849 * 85.13689 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 0.0003 6 6 4.7785 3.6142 0.0008 7 8 5.8603 3.0595 -0.0001 8 7 4.7113 4.9603 0.0021 9 6 3.4754 5.7566 -0.0032 10 6 3.8883 7.2433 0.0304 11 6 5.3245 7.1941 0.6153 12 1 5.3013 7.1379 1.7037 13 7 6.1135 8.3446 0.1678 14 6 7.2477 8.7027 0.8465 15 1 7.5603 8.1373 1.7119 16 6 7.9954 9.7925 0.4221 17 7 7.6141 10.4819 -0.6323 18 14 9.5430 10.2806 1.3475 19 1 10.7108 9.5691 0.7688 20 1 9.7484 11.7467 1.2299 21 1 9.3998 9.9141 2.7795 22 6 5.8650 5.8781 0.0022 23 8 2.2757 3.2802 0.0018 24 7 1.4686 2.3805 -0.0039 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 4.2442 0.7262 -0.0006 29 1 2.9043 5.5488 -0.9080 30 1 2.8780 5.5197 0.8773 31 1 3.2264 7.8152 0.6807 32 1 3.8961 7.6604 -0.9766 33 1 5.8324 8.8527 -0.6092 34 1 8.1364 11.2436 -0.9285 35 1 6.6699 5.4756 0.6173 36 1 6.2151 6.0475 -1.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018745293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = 20.778565 kcal Electronic energy + Delta-G solvation = -21548.308381 eV Core-core repulsion = 18037.594671 eV Total energy + Delta-G solvation = -3510.713710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.18590 -39.85137 -39.17029 -37.48782 -34.27675 -33.43743 -32.30308 -31.35389 -29.71798 -28.03876 -27.72571 -24.90922 -23.59787 -23.28709 -22.21249 -20.65844 -20.08751 -18.29792 -18.18218 -17.25950 -17.11554 -16.21567 -16.12038 -15.86738 -15.64091 -14.91186 -14.56850 -14.20423 -13.87082 -13.51031 -13.23279 -12.91820 -12.59505 -12.57748 -12.35704 -12.23712 -11.68783 -11.56780 -11.14350 -10.88842 -10.74848 -10.39193 -10.29293 -10.07498 -10.05631 -9.79930 -9.61936 -9.06232 -8.54829 -7.12749 -5.87185 -3.18375 0.59524 1.85006 2.35526 2.42334 2.94336 3.17575 3.40298 3.46164 3.46995 3.83080 4.44946 4.51102 4.57916 4.72173 4.77197 4.88343 4.96033 5.09735 5.18375 5.23915 5.42744 5.49608 5.65897 5.72818 5.89609 6.08043 6.17480 6.28879 6.36825 6.49959 6.58984 6.81082 7.43862 7.63045 7.74199 7.99012 8.30270 9.42571 9.94595 10.29429 11.34690 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047899 B = 0.003160 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.422519 B = 8857.833269 C = 9256.092766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.204 3.796 4 C -0.161 4.161 5 C -0.044 4.044 6 C 0.609 3.391 7 O -0.514 6.514 8 N -0.596 5.596 9 C 0.099 3.901 10 C -0.139 4.139 11 C 0.172 3.828 12 H 0.067 0.933 13 N -0.711 5.711 14 C -0.250 4.250 15 H 0.074 0.926 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.081 3.919 23 O 0.119 5.881 24 N -0.394 5.394 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.190 0.810 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.388 0.612 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 -16.574 0.725 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.007 3.993 4 C -0.183 4.183 5 C -0.110 4.110 6 C 0.393 3.607 7 O -0.391 6.391 8 N -0.328 5.328 9 C -0.024 4.024 10 C -0.177 4.177 11 C 0.059 3.941 12 H 0.085 0.915 13 N -0.350 5.350 14 C -0.381 4.381 15 H 0.092 0.908 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.043 4.043 23 O 0.054 5.946 24 N -0.118 5.118 25 H 0.125 0.875 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.207 0.793 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.223 0.777 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.297 -16.748 0.836 22.698 hybrid contribution 1.085 -0.055 0.105 1.092 sum -14.212 -16.803 0.941 22.028 Atomic orbital electron populations 1.23101 0.76607 1.04231 1.02492 1.86220 1.22738 1.20434 1.89402 1.21876 0.90632 0.85821 1.01013 1.22158 0.94399 0.94943 1.06844 1.24178 0.86994 0.93729 1.06108 1.16113 0.84993 0.80855 0.78696 1.90887 1.26493 1.70466 1.51230 1.48481 1.10718 1.03921 1.69691 1.22202 0.86246 0.91889 1.02073 1.22915 0.98623 0.93285 1.02904 1.21331 0.88880 0.86719 0.97141 0.91475 1.42313 1.27661 1.30159 1.34915 1.19255 1.00312 1.09947 1.08578 0.90847 1.24779 0.99402 0.98181 0.98075 1.69659 1.40468 1.21395 1.26143 0.86166 0.83170 0.77509 0.79183 1.21523 1.21703 1.20605 1.23640 0.87749 0.90337 1.02606 1.85027 1.11893 1.29397 1.68324 1.73982 1.16144 0.96712 1.24964 0.87520 0.92110 0.92109 0.79291 0.91007 0.90890 0.89800 0.90205 0.77749 0.93296 0.90481 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.95 10.57 -18.91 -0.20 -3.15 16 3 C 0.20 2.43 8.00 -16.72 -0.13 2.29 16 4 C -0.16 -1.92 10.97 -38.77 -0.43 -2.34 16 5 C -0.04 -0.57 7.08 -36.36 -0.26 -0.83 16 6 C 0.61 9.42 7.85 -12.47 -0.10 9.32 16 7 O -0.51 -9.44 17.17 5.30 0.09 -9.35 16 8 N -0.60 -8.99 3.33 -171.73 -0.57 -9.56 16 9 C 0.10 1.23 5.58 -3.06 -0.02 1.21 16 10 C -0.14 -1.94 6.57 -24.89 -0.16 -2.10 16 11 C 0.17 3.11 3.69 -65.77 -0.24 2.86 16 12 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 13 N -0.71 -16.52 5.28 -51.34 -0.27 -16.79 16 14 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 18 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 C 0.08 1.43 6.60 -2.52 -0.02 1.41 16 23 O 0.12 1.48 9.01 15.49 0.14 1.62 16 24 N -0.39 -4.90 11.50 30.47 0.35 -4.55 16 25 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 29 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 30 H 0.07 0.81 7.71 -51.93 -0.40 0.40 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 33 H 0.39 9.53 7.71 -40.82 -0.31 9.21 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -30.64 315.66 -4.98 -35.62 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.46 Total: 4.83 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.52 Total: 6.08 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.23 Total: -57.14 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.03 Total: -10.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.64 -4.98 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018745293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.401 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds