Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35354 * 116.99449 * 2 1 4 4 N 1.30554 * 125.44215 * 180.29948 * 3 2 1 5 5 C 1.36330 * 108.37985 * 180.16005 * 4 3 2 6 6 C 1.47364 * 126.40977 * 179.82525 * 5 4 3 7 7 O 1.21620 * 119.99896 * 179.69160 * 6 5 4 8 8 N 1.34775 * 120.00373 * 359.69132 * 6 5 4 9 9 C 1.46493 * 120.00228 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.85201 * 23.80004 * 9 8 6 11 11 C 1.53783 * 113.61843 * 154.99836 * 9 8 6 12 12 C 1.53784 * 87.08338 * 89.11341 * 11 9 8 13 13 H 1.09002 * 113.61454 * 270.80589 * 12 11 9 14 14 N 1.46499 * 113.61491 * 139.98310 * 12 11 9 15 15 C 1.36939 * 119.99933 * 155.27848 * 14 12 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 12 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 12 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47144 * 90.00258 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00775 * 19 17 15 22 22 H 1.48502 * 109.46967 * 330.00206 * 19 17 15 23 23 C 1.53780 * 113.61430 * 252.49415 * 9 8 6 24 24 C 1.35915 * 107.17562 * 359.56700 * 5 4 3 25 25 O 1.34197 * 125.44851 * 359.97037 * 3 2 1 26 26 H 1.08998 * 109.47294 * 299.99531 * 1 2 3 27 27 H 1.08993 * 109.47611 * 60.00115 * 1 2 3 28 28 H 1.09004 * 109.47046 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99938 * 359.97438 * 8 6 5 30 30 H 1.09000 * 113.60825 * 334.56902 * 11 9 8 31 31 H 1.09001 * 113.62188 * 203.66319 * 11 9 8 32 32 H 0.97001 * 119.99790 * 334.99822 * 14 12 11 33 33 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 34 34 H 1.08998 * 113.61772 * 156.33432 * 23 9 8 35 35 H 1.09001 * 113.61751 * 25.43490 * 23 9 8 36 36 H 1.07996 * 126.45676 * 180.23188 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3979 -0.0056 5 6 3.5699 2.7407 0.0001 6 6 4.8890 3.3977 0.0005 7 8 4.9637 4.6116 0.0002 8 7 6.0126 2.6535 0.0010 9 6 7.3239 3.3066 0.0019 10 1 7.2928 4.3180 0.4074 11 6 8.4444 2.4382 0.5979 12 6 8.6619 1.8842 -0.8201 13 1 8.0531 1.0085 -1.0449 14 7 10.0730 1.7007 -1.1684 15 6 10.4290 0.7878 -2.1251 16 1 9.6698 0.2001 -2.6196 17 6 11.7656 0.6181 -2.4592 18 7 12.6908 1.3342 -1.8562 19 14 12.2512 -0.6277 -3.7637 20 1 12.2585 0.0281 -5.0960 21 1 13.6066 -1.1552 -3.4641 22 1 11.2745 -1.7463 -3.7678 23 6 8.0651 3.2021 -1.3415 24 6 2.3601 3.3601 -0.0004 25 8 1.4226 2.3958 -0.0006 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 5.9531 1.6853 0.0016 30 1 8.0876 1.6922 1.3080 31 1 9.2891 3.0141 0.9760 32 1 10.7548 2.2287 -0.7242 33 1 13.6247 1.2152 -2.0894 34 1 8.8060 3.9869 -1.4937 35 1 7.4022 3.0729 -2.1971 36 1 2.1847 4.4257 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020440096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -4.163108 kcal Electronic energy + Delta-G solvation = -21097.921453 eV Core-core repulsion = 17586.126191 eV Total energy + Delta-G solvation = -3511.795263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.75058 -39.90131 -39.16897 -37.89821 -35.22651 -33.98668 -32.48597 -30.45271 -29.76752 -27.87041 -25.28525 -25.07461 -23.99223 -22.80009 -22.01412 -20.96736 -19.28636 -18.82893 -17.84920 -17.53941 -17.05588 -16.70762 -15.80683 -15.67956 -15.57682 -14.97968 -14.64213 -14.29475 -13.88116 -13.77971 -13.39466 -12.75996 -12.62176 -12.39059 -12.13498 -11.81161 -11.61515 -11.32223 -11.06654 -10.87739 -10.75502 -10.28792 -10.27433 -10.12397 -9.86019 -9.52535 -9.05608 -8.86935 -8.73649 -6.94521 -5.76477 -3.05177 0.84430 1.57340 1.79008 2.40237 3.11106 3.21159 3.45123 3.50345 3.51900 4.24794 4.41191 4.51100 4.59793 4.61270 4.79452 4.96402 5.07141 5.19359 5.24781 5.46593 5.49211 5.54381 5.90980 5.96448 6.15473 6.26446 6.31180 6.36467 6.53407 6.67133 6.72637 7.09118 7.19456 7.62509 7.71923 8.18504 8.42182 9.53425 10.10825 10.45498 11.45964 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.003234 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.103792 B = 8656.678720 C = 9597.310100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.380 3.620 4 N -0.453 5.453 5 C -0.043 4.043 6 C 0.603 3.397 7 O -0.538 6.538 8 N -0.685 5.685 9 C 0.113 3.887 10 H 0.099 0.901 11 C -0.159 4.159 12 C 0.166 3.834 13 H 0.075 0.925 14 N -0.712 5.712 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.175 4.175 24 C 0.001 3.999 25 O -0.226 6.226 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.411 0.589 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.157 1.434 6.109 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.134 3.866 4 N -0.199 5.199 5 C -0.162 4.162 6 C 0.388 3.612 7 O -0.416 6.416 8 N -0.334 5.334 9 C 0.008 3.992 10 H 0.117 0.883 11 C -0.198 4.198 12 C 0.053 3.947 13 H 0.093 0.907 14 N -0.350 5.350 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.218 4.218 24 C -0.072 4.072 25 O -0.118 6.118 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.247 0.753 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -25.585 1.382 5.970 26.309 hybrid contribution -0.305 -0.421 -0.648 0.831 sum -25.891 0.961 5.322 26.449 Atomic orbital electron populations 1.23307 0.75104 1.05715 1.02978 1.86408 1.23651 1.15800 1.89239 1.23379 0.85626 0.79555 0.98054 1.71140 1.09737 1.15712 1.23287 1.21753 0.95989 0.88325 1.10137 1.16610 0.81905 0.85976 0.76723 1.90827 1.86665 1.12687 1.51393 1.45541 1.04856 1.10763 1.72233 1.21911 0.80544 0.97222 0.99505 0.88331 1.23860 0.97217 0.99211 0.99553 1.21644 0.87617 0.94085 0.91320 0.90672 1.42399 1.00872 1.46101 1.45594 1.19313 0.91696 1.13554 1.12892 0.91073 1.24764 0.95816 1.00087 1.00252 1.69664 1.00102 1.43342 1.44983 0.86183 0.77611 0.80919 0.81450 1.21708 1.21780 1.20701 1.24314 0.99236 1.02654 0.95550 1.24967 0.84900 0.93775 1.03509 1.84384 1.39561 1.15879 1.71931 0.91404 0.91386 0.86256 0.75316 0.91577 0.88862 0.78017 0.93467 0.89404 0.92319 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.73 101.05 1.08 1.18 16 2 O -0.24 -2.21 10.55 -40.98 -0.43 -2.64 16 3 C 0.38 4.16 8.98 52.22 0.47 4.63 16 4 N -0.45 -5.99 11.10 -11.72 -0.13 -6.12 16 5 C -0.04 -0.55 6.99 -82.99 -0.58 -1.13 16 6 C 0.60 8.92 7.81 -12.55 -0.10 8.83 16 7 O -0.54 -9.08 16.49 5.26 0.09 -8.99 16 8 N -0.68 -10.03 5.26 -54.11 -0.28 -10.31 16 9 C 0.11 1.78 4.32 -67.12 -0.29 1.49 16 10 H 0.10 1.56 7.46 -51.93 -0.39 1.18 16 11 C -0.16 -2.60 7.58 -25.92 -0.20 -2.79 16 12 C 0.17 3.29 4.36 -67.12 -0.29 2.99 16 13 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 14 N -0.71 -17.90 5.40 -52.63 -0.28 -18.18 16 15 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 19 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.18 -3.17 7.68 -25.92 -0.20 -3.37 16 24 C 0.00 0.01 11.93 29.90 0.36 0.36 16 25 O -0.23 -2.11 10.20 -17.75 -0.18 -2.29 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.41 5.73 8.43 -40.82 -0.34 5.39 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.53 8.12 -51.93 -0.42 1.11 16 32 H 0.39 10.23 7.92 -40.82 -0.32 9.90 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.24 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -33.73 321.86 -5.07 -38.80 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.40 Total: 10.17 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.01 Total: 4.76 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.03 Total: -62.17 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.53 Total: -13.92 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.73 -5.07 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020440096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.636 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds