Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48505 * 109.47307 * 274.99144 * 3 2 1 5 5 H 1.48501 * 109.47175 * 34.98794 * 3 2 1 6 6 H 1.48500 * 109.47116 * 154.98964 * 3 2 1 7 7 C 1.38808 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 187.06063 * 7 2 1 9 9 N 1.36947 * 120.00131 * 7.05598 * 7 2 1 10 10 C 1.47019 * 125.64594 * 354.87557 * 9 7 2 11 11 C 1.54323 * 107.27097 * 178.91906 * 10 9 7 12 12 C 1.55153 * 102.94114 * 337.80938 * 11 10 9 13 13 H 1.09010 * 111.00597 * 277.38854 * 12 11 10 14 14 C 1.52999 * 111.00775 * 153.57460 * 12 11 10 15 15 N 1.46495 * 109.47731 * 174.99681 * 14 12 11 16 16 C 1.34776 * 120.00333 * 179.97438 * 15 14 12 17 17 O 1.21700 * 119.99563 * 0.28281 * 16 15 14 18 18 C 1.46655 * 120.00054 * 179.97438 * 16 15 14 19 19 C 1.37927 * 126.21600 * 179.69262 * 18 16 15 20 20 C 1.39921 * 107.11267 * 179.85235 * 19 18 16 21 21 F 1.35096 * 126.08317 * 180.15924 * 20 19 18 22 22 C 1.35575 * 107.84272 * 0.41823 * 20 19 18 23 23 N 1.35745 * 108.82886 * 359.73919 * 22 20 19 24 24 H 0.97005 * 125.67709 * 180.02562 * 23 22 20 25 25 C 1.47418 * 125.64878 * 174.85125 * 9 7 2 26 26 H 0.97002 * 120.00191 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.88189 * 59.50252 * 10 9 7 28 28 H 1.08999 * 109.88416 * 298.33958 * 10 9 7 29 29 H 1.09001 * 110.72231 * 219.44760 * 11 10 9 30 30 H 1.08997 * 110.87297 * 96.24045 * 11 10 9 31 31 H 1.09009 * 109.46817 * 54.99656 * 14 12 11 32 32 H 1.08999 * 109.47109 * 295.00153 * 14 12 11 33 33 H 0.96999 * 119.99610 * 0.02562 * 15 14 12 34 34 H 1.08000 * 126.44475 * 0.02562 * 19 18 16 35 35 H 1.07992 * 125.58480 * 179.74464 * 22 20 19 36 36 H 1.09001 * 110.36703 * 85.31107 * 25 9 7 37 37 H 1.09007 * 110.36825 * 322.99232 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0840 -1.2058 0.1144 9 7 1.3332 -2.3836 -0.1468 10 6 -0.1283 -2.5321 -0.2051 11 6 -0.4288 -4.0328 -0.4026 12 6 0.8917 -4.5745 -1.0109 13 1 0.9275 -4.3990 -2.0862 14 6 1.0724 -6.0605 -0.6945 15 7 2.2636 -6.5650 -1.3819 16 6 2.6225 -7.8572 -1.2480 17 8 1.9539 -8.6061 -0.5601 18 6 3.8147 -8.3623 -1.9367 19 6 4.3003 -9.6522 -1.8852 20 6 5.4460 -9.6931 -2.6875 21 9 6.2227 -10.7757 -2.9107 22 6 5.6413 -8.4518 -3.1963 23 7 4.6556 -7.6339 -2.7468 24 1 4.5596 -6.6927 -2.9612 25 6 1.9493 -3.7170 -0.2722 26 1 -0.4850 0.8400 0.0004 27 1 -0.5257 -1.9609 -1.0442 28 1 -0.5738 -2.1843 0.7268 29 1 -1.2583 -4.1721 -1.0958 30 1 -0.6402 -4.5154 0.5516 31 1 0.1960 -6.6132 -1.0332 32 1 1.1910 -6.1911 0.3812 33 1 2.7945 -5.9688 -1.9329 34 1 3.8746 -10.4764 -1.3322 35 1 6.4487 -8.1613 -3.8520 36 1 2.1546 -4.1342 0.7137 37 1 2.8664 -3.6575 -0.8583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028697379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -13.894091 kcal Electronic energy + Delta-G solvation = -21168.345508 eV Core-core repulsion = 17668.501068 eV Total energy + Delta-G solvation = -3499.844440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.75585 -41.57227 -39.31455 -37.68087 -34.85770 -32.65028 -31.17471 -30.32193 -29.38354 -28.18603 -25.68243 -24.05234 -22.68509 -21.03116 -20.66432 -20.16042 -20.07867 -18.95790 -16.91563 -16.33622 -16.23785 -16.03494 -15.66677 -15.39148 -14.93215 -14.71325 -14.55499 -13.97668 -13.78404 -13.65737 -13.54318 -13.04103 -12.43514 -12.12099 -11.99453 -11.83049 -11.48107 -10.96995 -10.86991 -10.59348 -10.30252 -10.13390 -10.01601 -9.90252 -9.74910 -9.29361 -9.16617 -8.64502 -8.59032 -6.90580 -5.79399 -3.12256 1.05783 2.12586 2.58234 2.94211 3.13430 3.34533 3.39835 3.42254 4.22623 4.42852 4.56339 4.67494 4.92860 5.00536 5.11741 5.25847 5.33386 5.46065 5.59605 5.64949 5.78966 5.92779 5.96415 6.09619 6.24110 6.26278 6.39276 6.45447 6.51118 6.58393 6.80699 6.84055 7.32460 7.48773 7.56667 7.75814 7.98798 8.18901 9.14628 9.75264 10.41315 11.32659 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.003207 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.989757 B = 8727.851760 C = 9610.161453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.722 5.722 16 C 0.586 3.414 17 O -0.526 6.526 18 C -0.022 4.022 19 C -0.132 4.132 20 C 0.001 3.999 21 F -0.128 7.128 22 C 0.001 3.999 23 N -0.526 5.526 24 H 0.427 0.573 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.396 0.604 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.020 0.980 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 -15.132 -7.316 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.373 5.373 16 C 0.372 3.628 17 O -0.402 6.402 18 C -0.137 4.137 19 C -0.159 4.159 20 C -0.025 4.025 21 F -0.107 7.107 22 C -0.136 4.136 23 N -0.123 5.123 24 H 0.266 0.734 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.229 0.771 34 H 0.178 0.822 35 H 0.200 0.800 36 H 0.037 0.963 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.977 -15.281 -6.790 18.118 hybrid contribution 0.903 1.480 -0.463 1.794 sum 7.879 -13.801 -7.253 17.469 Atomic orbital electron populations 1.69974 1.04939 1.25140 1.56528 1.24827 0.95702 0.97717 1.02022 0.86123 0.78702 0.83586 0.77502 1.21599 1.21701 1.20629 1.19045 0.91094 0.82577 1.43381 0.90485 1.44482 1.01746 1.00890 1.86142 1.21165 0.84403 0.88395 1.00917 1.22853 0.95153 0.99647 0.99664 1.22633 0.98846 0.91703 1.00662 0.90221 1.21489 0.86208 0.94013 0.97358 1.45959 1.30020 1.09945 1.51333 1.16925 0.82915 0.82166 0.80780 1.90866 1.52960 1.56582 1.39789 1.20386 0.97070 0.92484 1.03729 1.21315 0.96044 0.96357 1.02207 1.16482 0.95228 0.84390 1.06378 1.91452 1.73287 1.51920 1.93997 1.21779 0.96560 0.90014 1.05255 1.41776 1.21073 1.11947 1.37546 0.73350 1.21586 0.93928 0.86770 0.96141 0.93678 0.93371 0.94003 0.91897 0.92077 0.91187 0.90874 0.77058 0.82245 0.79976 0.96277 0.94806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.36 55.49 0.57 -25.88 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.31 10.27 -15.06 -0.15 -6.46 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.61 -14.85 3.39 -170.08 -0.58 -15.43 16 10 C 0.18 4.10 5.38 -3.07 -0.02 4.08 16 11 C -0.13 -2.32 6.42 -24.90 -0.16 -2.48 16 12 C -0.12 -1.82 3.05 -88.47 -0.27 -2.09 16 13 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 14 C 0.13 1.75 5.13 -4.04 -0.02 1.73 16 15 N -0.72 -8.22 5.50 -61.63 -0.34 -8.56 16 16 C 0.59 7.55 7.79 -12.86 -0.10 7.45 16 17 O -0.53 -8.67 16.88 5.19 0.09 -8.59 16 18 C -0.02 -0.24 7.05 -81.98 -0.58 -0.82 16 19 C -0.13 -1.48 10.66 -39.07 -0.42 -1.89 16 20 C 0.00 0.01 7.98 -39.90 -0.32 -0.31 16 21 F -0.13 -1.41 17.32 2.25 0.04 -1.37 16 22 C 0.00 0.01 11.90 -16.77 -0.20 -0.19 16 23 N -0.53 -3.90 6.00 -9.31 -0.06 -3.95 16 24 H 0.43 1.95 8.19 -40.82 -0.33 1.61 16 25 C 0.14 2.69 6.65 -2.53 -0.02 2.67 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.05 1.24 7.30 -51.93 -0.38 0.86 16 28 H 0.04 1.09 7.61 -51.93 -0.40 0.70 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 33 H 0.40 3.55 7.60 -40.82 -0.31 3.24 16 34 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 317.52 15.07 4.79 4.79 Total: -1.00 -32.94 317.52 -7.60 -40.54 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.74 Total: 0.50 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.35 Total: 1.43 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.40 Total: -53.82 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.94 -7.60 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028697379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.642 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds