Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48505 * 109.47307 * 274.99144 * 3 2 1 5 5 H 1.48501 * 109.47175 * 34.98794 * 3 2 1 6 6 H 1.48500 * 109.47116 * 154.98964 * 3 2 1 7 7 C 1.38808 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 187.06063 * 7 2 1 9 9 N 1.36947 * 120.00131 * 7.05598 * 7 2 1 10 10 C 1.47019 * 125.64594 * 354.87557 * 9 7 2 11 11 C 1.54323 * 107.27097 * 178.91906 * 10 9 7 12 12 C 1.55153 * 102.94114 * 337.80938 * 11 10 9 13 13 H 1.09010 * 111.00597 * 277.38854 * 12 11 10 14 14 C 1.52999 * 111.00775 * 153.57460 * 12 11 10 15 15 N 1.46495 * 109.47731 * 174.99681 * 14 12 11 16 16 C 1.34776 * 120.00333 * 179.97438 * 15 14 12 17 17 O 1.21700 * 119.99563 * 0.28281 * 16 15 14 18 18 C 1.46655 * 120.00054 * 179.97438 * 16 15 14 19 19 C 1.37927 * 126.21600 * 179.69262 * 18 16 15 20 20 C 1.39921 * 107.11267 * 179.85235 * 19 18 16 21 21 F 1.35096 * 126.08317 * 180.15924 * 20 19 18 22 22 C 1.35575 * 107.84272 * 0.41823 * 20 19 18 23 23 N 1.35745 * 108.82886 * 359.73919 * 22 20 19 24 24 H 0.97005 * 125.67709 * 180.02562 * 23 22 20 25 25 C 1.47418 * 125.64878 * 174.85125 * 9 7 2 26 26 H 0.97002 * 120.00191 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.88189 * 59.50252 * 10 9 7 28 28 H 1.08999 * 109.88416 * 298.33958 * 10 9 7 29 29 H 1.09001 * 110.72231 * 219.44760 * 11 10 9 30 30 H 1.08997 * 110.87297 * 96.24045 * 11 10 9 31 31 H 1.09009 * 109.46817 * 54.99656 * 14 12 11 32 32 H 1.08999 * 109.47109 * 295.00153 * 14 12 11 33 33 H 0.96999 * 119.99610 * 0.02562 * 15 14 12 34 34 H 1.08000 * 126.44475 * 0.02562 * 19 18 16 35 35 H 1.07992 * 125.58480 * 179.74464 * 22 20 19 36 36 H 1.09001 * 110.36703 * 85.31107 * 25 9 7 37 37 H 1.09007 * 110.36825 * 322.99232 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0840 -1.2058 0.1144 9 7 1.3332 -2.3836 -0.1468 10 6 -0.1283 -2.5321 -0.2051 11 6 -0.4288 -4.0328 -0.4026 12 6 0.8917 -4.5745 -1.0109 13 1 0.9275 -4.3990 -2.0862 14 6 1.0724 -6.0605 -0.6945 15 7 2.2636 -6.5650 -1.3819 16 6 2.6225 -7.8572 -1.2480 17 8 1.9539 -8.6061 -0.5601 18 6 3.8147 -8.3623 -1.9367 19 6 4.3003 -9.6522 -1.8852 20 6 5.4460 -9.6931 -2.6875 21 9 6.2227 -10.7757 -2.9107 22 6 5.6413 -8.4518 -3.1963 23 7 4.6556 -7.6339 -2.7468 24 1 4.5596 -6.6927 -2.9612 25 6 1.9493 -3.7170 -0.2722 26 1 -0.4850 0.8400 0.0004 27 1 -0.5257 -1.9609 -1.0442 28 1 -0.5738 -2.1843 0.7268 29 1 -1.2583 -4.1721 -1.0958 30 1 -0.6402 -4.5154 0.5516 31 1 0.1960 -6.6132 -1.0332 32 1 1.1910 -6.1911 0.3812 33 1 2.7945 -5.9688 -1.9329 34 1 3.8746 -10.4764 -1.3322 35 1 6.4487 -8.1613 -3.8520 36 1 2.1546 -4.1342 0.7137 37 1 2.8664 -3.6575 -0.8583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028697379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -36.931399 kcal Electronic energy + Delta-G solvation = -21169.344481 eV Core-core repulsion = 17668.501068 eV Total energy + Delta-G solvation = -3500.843413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.52600 -42.32915 -40.36528 -39.17387 -36.14811 -34.37931 -32.01983 -31.72070 -30.62842 -29.53372 -27.29313 -25.53198 -23.70163 -22.06472 -21.70451 -21.56443 -21.20309 -19.96873 -18.78387 -17.40265 -17.18785 -16.86080 -16.69841 -16.47735 -16.39977 -15.97411 -15.61431 -15.40386 -14.84123 -14.70469 -14.47777 -14.29795 -13.94911 -13.83356 -13.43406 -13.04082 -12.78006 -12.71776 -12.64740 -12.01594 -11.95182 -11.86838 -11.56851 -11.47186 -11.26332 -10.68577 -10.26826 -9.98716 -9.30953 -8.89425 -7.86495 -5.20787 0.25527 1.39304 1.46576 1.47582 1.56688 1.90141 2.03699 2.20412 2.49396 3.31803 3.44796 3.60067 3.77540 3.89066 4.01621 4.03664 4.06803 4.26450 4.43673 4.53212 4.62330 4.71598 4.81688 4.89004 4.91791 5.03587 5.08934 5.23524 5.37491 5.44161 5.47426 5.67953 5.73495 5.78462 6.20224 6.26928 6.45986 7.04062 7.10139 7.78356 8.42750 9.24508 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.003207 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.989757 B = 8727.851760 C = 9610.161453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.094 0.906 14 C 0.144 3.856 15 N -0.711 5.711 16 C 0.589 3.411 17 O -0.569 6.569 18 C -0.040 4.040 19 C -0.146 4.146 20 C -0.032 4.032 21 F -0.137 7.137 22 C 0.038 3.962 23 N -0.509 5.509 24 H 0.443 0.557 25 C 0.137 3.863 26 H 0.246 0.754 27 H 0.015 0.985 28 H 0.000 1.000 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.150 0.850 35 H 0.225 0.775 36 H 0.017 0.983 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -15.466 -8.879 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.372 4.372 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.056 3.944 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.112 0.888 14 C 0.020 3.980 15 N -0.362 5.362 16 C 0.377 3.623 17 O -0.448 6.448 18 C -0.154 4.154 19 C -0.174 4.174 20 C -0.056 4.056 21 F -0.116 7.116 22 C -0.101 4.101 23 N -0.107 5.107 24 H 0.286 0.714 25 C 0.012 3.988 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.018 0.982 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.167 0.833 35 H 0.242 0.758 36 H 0.035 0.965 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.876 -15.606 -8.373 19.811 hybrid contribution 0.388 1.549 0.027 1.597 sum 9.264 -14.058 -8.346 18.791 Atomic orbital electron populations 1.70198 1.06391 1.25263 1.58084 1.25665 0.96547 1.01080 1.02640 0.85089 0.77844 0.79268 0.77317 1.21221 1.22522 1.19173 1.19466 0.91681 0.83884 1.42164 0.89815 1.44814 1.02504 1.02280 1.85954 1.20934 0.83958 0.92049 0.97457 1.22715 0.97082 0.95208 1.01180 1.22424 0.95993 0.92236 1.00774 0.88792 1.21242 0.87353 0.92390 0.97017 1.45760 1.29569 1.09797 1.51049 1.17111 0.83034 0.81993 0.80160 1.90844 1.54522 1.57669 1.41800 1.19929 0.97383 0.92724 1.05393 1.21417 0.96781 0.96619 1.02539 1.16695 0.95603 0.85424 1.07922 1.91424 1.73428 1.52567 1.94157 1.22379 0.96039 0.88537 1.03106 1.41767 1.20091 1.12620 1.36186 0.71425 1.21791 0.95490 0.84779 0.96769 0.94448 0.96696 0.98167 0.89551 0.91070 0.90262 0.91890 0.75381 0.83263 0.75811 0.96525 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.43 10.36 21.65 0.22 -56.20 16 2 C -0.07 -3.69 5.48 84.86 0.46 -3.22 16 3 Si 0.98 44.56 29.56 68.60 2.03 46.58 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.24 -13.15 10.27 84.03 0.86 -12.29 16 8 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 9 N -0.63 -30.76 3.39 -692.00 -2.35 -33.11 16 10 C 0.18 8.61 5.38 86.73 0.47 9.08 16 11 C -0.12 -4.08 6.42 31.78 0.20 -3.88 16 12 C -0.09 -2.66 3.05 -9.40 -0.03 -2.69 16 13 H 0.09 2.44 8.14 -2.38 -0.02 2.43 16 14 C 0.14 3.44 5.13 86.38 0.44 3.89 16 15 N -0.71 -14.32 5.50 -467.10 -2.57 -16.89 16 16 C 0.59 14.30 7.79 86.44 0.67 14.97 16 17 O -0.57 -18.54 16.88 -4.35 -0.07 -18.61 16 18 C -0.04 -0.78 7.05 40.36 0.28 -0.50 16 19 C -0.15 -3.16 10.66 22.60 0.24 -2.92 16 20 C -0.03 -0.59 7.98 22.06 0.18 -0.41 16 21 F -0.14 -2.86 17.32 44.97 0.78 -2.08 16 22 C 0.04 0.42 11.90 83.47 0.99 1.41 16 23 N -0.51 -5.74 6.00 -183.38 -1.10 -6.84 16 24 H 0.44 2.13 8.19 -92.70 -0.76 1.37 16 25 C 0.14 4.92 6.65 86.86 0.58 5.49 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.01 0.79 7.30 -2.38 -0.02 0.77 16 28 H 0.00 0.00 7.61 -2.39 -0.02 -0.01 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 31 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 1.69 7.96 -2.39 -0.02 1.67 16 33 H 0.41 5.89 7.60 -92.71 -0.70 5.19 16 34 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.23 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.02 0.63 7.91 -2.39 -0.02 0.61 16 37 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -74.27 317.52 1.95 -72.32 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -0.35 Total: 5.90 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.36 Total: 8.93 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -5.79 Total: -113.05 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.07 Total: -18.61 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.27 1.95 -72.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028697379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.391 kcal (2) G-P(sol) polarization free energy of solvation -74.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds