Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48499 * 109.46594 * 264.66318 * 3 2 1 5 5 H 1.48498 * 109.47121 * 24.66569 * 3 2 1 6 6 H 1.48498 * 109.47039 * 144.66852 * 3 2 1 7 7 C 1.38811 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00074 * 336.24358 * 7 2 1 9 9 N 1.36932 * 120.00390 * 156.24659 * 7 2 1 10 10 C 1.47421 * 125.65223 * 162.04979 * 9 7 2 11 11 C 1.54911 * 104.83404 * 155.90584 * 10 9 7 12 12 C 1.55164 * 101.58168 * 37.01043 * 11 10 9 13 13 H 1.08999 * 110.71670 * 83.03672 * 12 11 10 14 14 C 1.52995 * 110.71941 * 206.13907 * 12 11 10 15 15 N 1.46508 * 109.46934 * 182.56025 * 14 12 11 16 16 C 1.34773 * 119.99933 * 179.97438 * 15 14 12 17 17 O 1.21700 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.46656 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.37932 * 126.21340 * 180.02562 * 18 16 15 20 20 C 1.39927 * 107.10905 * 180.02562 * 19 18 16 21 21 F 1.35095 * 126.07995 * 179.73069 * 20 19 18 22 22 C 1.35569 * 107.84150 * 0.02562 * 20 19 18 23 23 N 1.35746 * 108.83766 * 359.97438 * 22 20 19 24 24 H 0.96992 * 125.68404 * 180.02562 * 23 22 20 25 25 C 1.47327 * 125.61127 * 342.27471 * 9 7 2 26 26 H 0.97001 * 120.00264 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.36582 * 37.06839 * 10 9 7 28 28 H 1.08996 * 110.46176 * 274.79298 * 10 9 7 29 29 H 1.09002 * 111.00221 * 278.93901 * 11 10 9 30 30 H 1.08993 * 111.03841 * 155.09894 * 11 10 9 31 31 H 1.08996 * 109.47523 * 62.55556 * 14 12 11 32 32 H 1.09001 * 109.47049 * 302.55533 * 14 12 11 33 33 H 0.96994 * 119.99555 * 359.97438 * 15 14 12 34 34 H 1.08002 * 126.44415 * 359.97438 * 19 18 16 35 35 H 1.08000 * 125.58390 * 179.97438 * 22 20 19 36 36 H 1.08994 * 110.06597 * 61.67838 * 25 9 7 37 37 H 1.09004 * 109.84639 * 300.41659 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6104 1.9812 -1.3940 5 1 1.3958 2.6826 0.5843 6 1 3.4868 1.4754 0.8097 7 6 2.0102 -1.2021 0.0005 8 1 1.5389 -2.0977 0.3777 9 7 3.2926 -1.2527 -0.4771 10 6 4.2677 -2.3252 -0.2089 11 6 5.2609 -2.2642 -1.3962 12 6 5.3572 -0.7354 -1.6435 13 1 6.0753 -0.2791 -0.9623 14 6 5.7333 -0.4451 -3.0978 15 7 5.8763 1.0008 -3.2859 16 6 6.2066 1.4936 -4.4960 17 8 6.3856 0.7375 -5.4327 18 6 6.3492 2.9410 -4.6844 19 6 6.6805 3.5810 -5.8605 20 6 6.7059 4.9535 -5.5892 21 9 6.9936 5.9339 -6.4730 22 6 6.3970 5.1240 -4.2802 23 7 6.1778 3.9073 -3.7195 24 1 5.9398 3.7458 -2.7932 25 6 3.9269 -0.2413 -1.3404 26 1 -0.4850 0.8400 -0.0004 27 1 3.7684 -3.2938 -0.1814 28 1 4.7882 -2.1408 0.7309 29 1 4.8576 -2.7767 -2.2696 30 1 6.2304 -2.6766 -1.1169 31 1 4.9516 -0.8217 -3.7575 32 1 6.6766 -0.9373 -3.3344 33 1 5.7332 1.6034 -2.5394 34 1 6.8830 3.1111 -6.8116 35 1 6.3354 6.0725 -3.7674 36 1 3.9677 0.7181 -0.8247 37 1 3.3645 -0.1419 -2.2688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028697381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -5.860152 kcal Electronic energy + Delta-G solvation = -21627.521059 eV Core-core repulsion = 18128.024996 eV Total energy + Delta-G solvation = -3499.496062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.73388 -41.55951 -39.39131 -38.01354 -34.92581 -32.70682 -31.21027 -30.75770 -29.58338 -28.60103 -25.92631 -24.05799 -22.77833 -21.04976 -20.73611 -20.41562 -20.28908 -19.04854 -17.05974 -16.43960 -16.34606 -16.03679 -15.90736 -15.65704 -15.13454 -14.85282 -14.50289 -13.92561 -13.81000 -13.64220 -13.60329 -13.28254 -12.84988 -12.58660 -12.06867 -11.97365 -11.69081 -11.41749 -11.07153 -10.84045 -10.69035 -10.35095 -10.21973 -9.97724 -9.46317 -9.29603 -9.18082 -8.72938 -8.57486 -7.16271 -6.03540 -3.31954 1.06987 2.14650 2.60107 2.90486 3.13662 3.17082 3.30662 3.37554 4.22713 4.43731 4.56909 4.64838 4.74566 4.91071 4.95003 4.97582 5.14214 5.26837 5.35626 5.51340 5.66155 5.69880 5.76592 5.91239 5.97800 6.09469 6.17385 6.20250 6.34163 6.49810 6.53453 6.62190 6.70073 6.85129 7.28396 7.61943 7.96359 8.23011 8.74780 9.60031 10.08655 11.13201 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.004597 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.046101 B = 6089.920518 C = 7185.733536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.094 0.906 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.725 5.725 16 C 0.588 3.412 17 O -0.524 6.524 18 C -0.024 4.024 19 C -0.130 4.130 20 C 0.002 3.998 21 F -0.127 7.127 22 C 0.002 3.998 23 N -0.527 5.527 24 H 0.427 0.573 25 C 0.124 3.876 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.395 0.605 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.021 0.979 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.701 7.069 -6.018 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.112 0.888 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.376 5.376 16 C 0.375 3.625 17 O -0.400 6.400 18 C -0.138 4.138 19 C -0.157 4.157 20 C -0.024 4.024 21 F -0.106 7.106 22 C -0.135 4.135 23 N -0.124 5.124 24 H 0.266 0.734 25 C -0.001 4.001 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.229 0.771 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.039 0.961 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.529 6.522 -6.519 18.061 hybrid contribution 0.208 1.653 0.811 1.853 sum 15.737 8.175 -5.708 18.630 Atomic orbital electron populations 1.69853 1.05506 1.26583 1.52888 1.24964 0.95135 0.97309 1.00371 0.86877 0.78977 0.85123 0.77177 1.21571 1.23190 1.20777 1.18693 0.85232 0.95714 1.37364 0.88844 1.44855 1.10901 1.22204 1.55705 1.21621 0.90130 0.93127 0.94451 1.22733 0.99585 0.93592 1.00058 1.22480 0.98233 0.98331 0.94641 0.90170 1.21500 1.02054 0.78916 0.96583 1.45939 1.70974 1.09511 1.11140 1.16901 0.77238 0.85314 0.83093 1.90862 1.50777 1.57951 1.40420 1.20365 1.14550 0.89192 0.89715 1.21310 1.04654 0.91342 0.98428 1.16460 1.12442 0.85716 0.87787 1.91452 1.92171 1.60059 1.66924 1.21790 1.08051 0.89937 0.93722 1.41789 1.53315 1.05504 1.11814 0.73437 1.21765 0.90765 0.92756 0.94792 0.92666 0.93038 0.95736 0.90747 0.91112 0.90466 0.90835 0.77135 0.82166 0.79946 0.96131 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.97 55.49 0.78 -26.73 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.50 16 3 Si 0.89 21.59 24.39 -169.99 -4.15 17.44 16 4 H -0.29 -6.61 6.84 56.52 0.39 -6.22 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 7 C -0.24 -6.75 10.56 -15.06 -0.16 -6.91 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 9 N -0.61 -14.14 3.22 -169.83 -0.55 -14.69 16 10 C 0.13 2.42 7.23 -2.53 -0.02 2.40 16 11 C -0.12 -1.72 6.54 -24.58 -0.16 -1.88 16 12 C -0.12 -1.72 2.98 -88.78 -0.26 -1.98 16 13 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 14 C 0.13 1.77 5.00 -4.04 -0.02 1.75 16 15 N -0.73 -9.15 5.43 -61.62 -0.33 -9.49 16 16 C 0.59 8.19 7.79 -12.86 -0.10 8.09 16 17 O -0.52 -8.94 16.88 5.19 0.09 -8.85 16 18 C -0.02 -0.29 7.05 -81.98 -0.58 -0.86 16 19 C -0.13 -1.57 10.66 -39.06 -0.42 -1.99 16 20 C 0.00 0.02 7.98 -39.90 -0.32 -0.30 16 21 F -0.13 -1.50 17.32 2.25 0.04 -1.46 16 22 C 0.00 0.02 11.90 -16.77 -0.20 -0.18 16 23 N -0.53 -4.74 6.00 -9.31 -0.06 -4.80 16 24 H 0.43 2.79 8.19 -40.82 -0.33 2.45 16 25 C 0.12 2.49 4.55 -2.90 -0.01 2.48 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.40 4.27 7.53 -40.82 -0.31 3.96 16 34 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.02 0.44 3.55 -51.93 -0.18 0.26 16 37 H 0.04 0.94 7.73 -51.93 -0.40 0.53 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -33.82 311.93 -6.43 -40.25 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.61 Total: 2.52 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.34 Total: 1.11 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.16 Total: -55.71 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.82 -6.43 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028697381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.387 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds