Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48499 * 109.46594 * 264.66318 * 3 2 1 5 5 H 1.48498 * 109.47121 * 24.66569 * 3 2 1 6 6 H 1.48498 * 109.47039 * 144.66852 * 3 2 1 7 7 C 1.38811 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00074 * 336.24358 * 7 2 1 9 9 N 1.36932 * 120.00390 * 156.24659 * 7 2 1 10 10 C 1.47421 * 125.65223 * 162.04979 * 9 7 2 11 11 C 1.54911 * 104.83404 * 155.90584 * 10 9 7 12 12 C 1.55164 * 101.58168 * 37.01043 * 11 10 9 13 13 H 1.08999 * 110.71670 * 83.03672 * 12 11 10 14 14 C 1.52995 * 110.71941 * 206.13907 * 12 11 10 15 15 N 1.46508 * 109.46934 * 182.56025 * 14 12 11 16 16 C 1.34773 * 119.99933 * 179.97438 * 15 14 12 17 17 O 1.21700 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.46656 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.37932 * 126.21340 * 180.02562 * 18 16 15 20 20 C 1.39927 * 107.10905 * 180.02562 * 19 18 16 21 21 F 1.35095 * 126.07995 * 179.73069 * 20 19 18 22 22 C 1.35569 * 107.84150 * 0.02562 * 20 19 18 23 23 N 1.35746 * 108.83766 * 359.97438 * 22 20 19 24 24 H 0.96992 * 125.68404 * 180.02562 * 23 22 20 25 25 C 1.47327 * 125.61127 * 342.27471 * 9 7 2 26 26 H 0.97001 * 120.00264 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.36582 * 37.06839 * 10 9 7 28 28 H 1.08996 * 110.46176 * 274.79298 * 10 9 7 29 29 H 1.09002 * 111.00221 * 278.93901 * 11 10 9 30 30 H 1.08993 * 111.03841 * 155.09894 * 11 10 9 31 31 H 1.08996 * 109.47523 * 62.55556 * 14 12 11 32 32 H 1.09001 * 109.47049 * 302.55533 * 14 12 11 33 33 H 0.96994 * 119.99555 * 359.97438 * 15 14 12 34 34 H 1.08002 * 126.44415 * 359.97438 * 19 18 16 35 35 H 1.08000 * 125.58390 * 179.97438 * 22 20 19 36 36 H 1.08994 * 110.06597 * 61.67838 * 25 9 7 37 37 H 1.09004 * 109.84639 * 300.41659 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6104 1.9812 -1.3940 5 1 1.3958 2.6826 0.5843 6 1 3.4868 1.4754 0.8097 7 6 2.0102 -1.2021 0.0005 8 1 1.5389 -2.0977 0.3777 9 7 3.2926 -1.2527 -0.4771 10 6 4.2677 -2.3252 -0.2089 11 6 5.2609 -2.2642 -1.3962 12 6 5.3572 -0.7354 -1.6435 13 1 6.0753 -0.2791 -0.9623 14 6 5.7333 -0.4451 -3.0978 15 7 5.8763 1.0008 -3.2859 16 6 6.2066 1.4936 -4.4960 17 8 6.3856 0.7375 -5.4327 18 6 6.3492 2.9410 -4.6844 19 6 6.6805 3.5810 -5.8605 20 6 6.7059 4.9535 -5.5892 21 9 6.9936 5.9339 -6.4730 22 6 6.3970 5.1240 -4.2802 23 7 6.1778 3.9073 -3.7195 24 1 5.9398 3.7458 -2.7932 25 6 3.9269 -0.2413 -1.3404 26 1 -0.4850 0.8400 -0.0004 27 1 3.7684 -3.2938 -0.1814 28 1 4.7882 -2.1408 0.7309 29 1 4.8576 -2.7767 -2.2696 30 1 6.2304 -2.6766 -1.1169 31 1 4.9516 -0.8217 -3.7575 32 1 6.6766 -0.9373 -3.3344 33 1 5.7332 1.6034 -2.5394 34 1 6.8830 3.1111 -6.8116 35 1 6.3354 6.0725 -3.7674 36 1 3.9677 0.7181 -0.8247 37 1 3.3645 -0.1419 -2.2688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028697381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -31.266572 kcal Electronic energy + Delta-G solvation = -21628.622764 eV Core-core repulsion = 18128.024996 eV Total energy + Delta-G solvation = -3500.597767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.56927 -42.38999 -40.48534 -39.39333 -36.18851 -34.53885 -32.45001 -31.89887 -30.75429 -29.83503 -27.41649 -25.58380 -23.84341 -22.17512 -21.81501 -21.71278 -21.30016 -20.03017 -18.99996 -17.84053 -17.26349 -17.18530 -16.88781 -16.54348 -16.32621 -15.99637 -15.59576 -15.42495 -15.10548 -14.83225 -14.63924 -14.52691 -14.23124 -14.15816 -13.47496 -13.25737 -13.02094 -12.77350 -12.66537 -12.40492 -12.15283 -11.85939 -11.61009 -11.37152 -11.22592 -10.77453 -10.33589 -10.04602 -9.36688 -9.09113 -8.20223 -5.45416 0.19523 1.21606 1.34234 1.35110 1.46946 1.84265 1.96403 2.14838 2.39910 2.99415 3.29043 3.38430 3.65732 3.77124 3.82704 3.86325 4.00059 4.20527 4.34580 4.44954 4.46954 4.54816 4.63103 4.77162 4.83614 4.84610 5.01499 5.09258 5.13624 5.22815 5.33930 5.43473 5.67055 5.68661 6.07938 6.18207 6.36227 6.74763 6.95835 7.52392 8.08538 9.00229 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.004597 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.046101 B = 6089.920518 C = 7185.733536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.047 4.047 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.313 1.313 6 H -0.262 1.262 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.631 5.631 10 C 0.122 3.878 11 C -0.108 4.108 12 C -0.099 4.099 13 H 0.110 0.890 14 C 0.138 3.862 15 N -0.718 5.718 16 C 0.589 3.411 17 O -0.564 6.564 18 C -0.044 4.044 19 C -0.142 4.142 20 C -0.028 4.028 21 F -0.135 7.135 22 C 0.037 3.963 23 N -0.513 5.513 24 H 0.441 0.559 25 C 0.117 3.883 26 H 0.262 0.738 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.406 0.594 34 H 0.153 0.847 35 H 0.225 0.775 36 H 0.020 0.980 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.619 8.720 -5.445 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.241 4.241 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.242 1.242 6 H -0.188 1.188 7 C -0.369 4.369 8 H 0.073 0.927 9 N -0.358 5.358 10 C -0.002 4.002 11 C -0.146 4.146 12 C -0.118 4.118 13 H 0.128 0.872 14 C 0.015 3.985 15 N -0.369 5.369 16 C 0.377 3.623 17 O -0.443 6.443 18 C -0.158 4.158 19 C -0.170 4.170 20 C -0.053 4.053 21 F -0.114 7.114 22 C -0.102 4.102 23 N -0.111 5.111 24 H 0.283 0.717 25 C -0.007 4.007 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.170 0.830 35 H 0.242 0.758 36 H 0.038 0.962 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 18.496 8.150 -5.916 21.060 hybrid contribution -0.742 1.049 0.645 1.438 sum 17.754 9.199 -5.271 20.678 Atomic orbital electron populations 1.70013 1.07517 1.27328 1.55653 1.25746 0.95904 1.01385 1.01040 0.85743 0.77694 0.79439 0.78416 1.19173 1.24178 1.18796 1.18639 0.87444 0.94559 1.36306 0.92665 1.44991 1.10364 1.24309 1.56165 1.21883 0.90119 0.91251 0.96990 1.22710 1.00298 0.93564 0.98034 1.22403 0.95102 0.98437 0.95884 0.87208 1.21395 1.02351 0.79516 0.95251 1.45845 1.70365 1.09454 1.11203 1.17095 0.76474 0.85905 0.82782 1.90838 1.52751 1.59101 1.41660 1.19995 1.16582 0.88694 0.90544 1.21430 1.04712 0.92302 0.98548 1.16653 1.14520 0.85189 0.88958 1.91428 1.92438 1.60124 1.67407 1.22394 1.04169 0.90939 0.92684 1.41797 1.52284 1.04955 1.12078 0.71740 1.21894 0.93623 0.92204 0.92986 0.92969 0.93917 0.94448 0.90900 0.86812 0.92502 0.88804 0.75837 0.82955 0.75826 0.96222 0.96201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.38 13.97 21.65 0.30 -60.07 16 2 C -0.05 -2.71 5.43 84.86 0.46 -2.25 16 3 Si 0.96 44.30 24.39 68.60 1.67 45.97 16 4 H -0.27 -11.16 6.84 99.48 0.68 -10.48 16 5 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.26 -11.23 6.87 99.48 0.68 -10.54 16 7 C -0.24 -13.71 10.56 84.03 0.89 -12.82 16 8 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 9 N -0.63 -28.82 3.22 -691.21 -2.22 -31.04 16 10 C 0.12 4.23 7.23 86.86 0.63 4.86 16 11 C -0.11 -2.65 6.54 31.99 0.21 -2.44 16 12 C -0.10 -2.50 2.98 -9.60 -0.03 -2.53 16 13 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 14 C 0.14 3.28 5.00 86.38 0.43 3.71 16 15 N -0.72 -16.03 5.43 -467.10 -2.53 -18.57 16 16 C 0.59 15.45 7.79 86.44 0.67 16.12 16 17 O -0.56 -18.96 16.88 -4.35 -0.07 -19.04 16 18 C -0.04 -0.97 7.05 40.36 0.28 -0.68 16 19 C -0.14 -3.32 10.66 22.61 0.24 -3.08 16 20 C -0.03 -0.57 7.98 22.06 0.18 -0.40 16 21 F -0.13 -3.00 17.32 44.97 0.78 -2.22 16 22 C 0.04 0.49 11.90 83.47 0.99 1.48 16 23 N -0.51 -7.37 6.00 -183.37 -1.10 -8.47 16 24 H 0.44 3.77 8.19 -92.71 -0.76 3.01 16 25 C 0.12 4.44 4.55 86.67 0.39 4.83 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.84 8.05 -2.39 -0.02 1.83 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.61 8.00 -2.39 -0.02 1.59 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.41 7.18 7.53 -92.71 -0.70 6.48 16 34 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.23 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.02 0.77 3.55 -2.39 -0.01 0.77 16 37 H 0.02 0.84 7.73 -2.38 -0.02 0.82 16 Total: -1.00 -77.39 311.93 1.78 -75.61 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -0.39 Total: 11.03 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.35 Total: 6.80 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -5.56 Total: -118.15 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.07 Total: -19.04 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.97 kcal Total: -77.39 1.78 -75.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028697381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.344 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds