Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36326 * 108.38064 * 179.97438 * 5 4 3 7 7 C 1.47376 * 126.41290 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00010 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99799 * 0.02606 * 7 6 5 10 10 C 1.46496 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.53943 * 113.74400 * 253.73998 * 10 9 7 12 12 N 1.47803 * 86.04000 * 222.08390 * 11 10 9 13 13 C 1.36939 * 134.46108 * 204.64687 * 12 11 10 14 14 H 1.07993 * 120.00187 * 179.86348 * 13 12 11 15 15 C 1.38815 * 119.99576 * 359.86031 * 13 12 11 16 16 N 1.31623 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46695 * 60.00378 * 17 15 13 19 19 H 1.48498 * 109.47053 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47255 * 300.00496 * 17 15 13 21 21 C 1.47585 * 91.05156 * 24.54564 * 12 11 10 22 22 C 1.35909 * 107.17783 * 359.97438 * 6 5 4 23 23 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 24 24 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 29 29 H 0.97005 * 119.99580 * 359.97438 * 9 7 6 30 30 H 1.09000 * 112.94399 * 25.33025 * 10 9 7 31 31 H 1.09008 * 113.76682 * 336.35014 * 11 10 9 32 32 H 1.09001 * 113.76925 * 107.73929 * 11 10 9 33 33 H 0.96997 * 119.99660 * 179.97438 * 16 15 13 34 34 H 1.08994 * 113.77405 * 221.15164 * 21 12 11 35 35 H 1.09003 * 113.76646 * 89.75658 * 21 12 11 36 36 H 1.08008 * 126.45962 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3038 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5324 3.1429 -0.0012 9 7 6.0358 4.7846 -0.0001 10 6 7.0886 5.8032 0.0003 11 6 7.2598 6.5173 1.3533 12 7 7.3944 7.7598 0.5643 13 6 7.9895 8.9740 0.7812 14 1 7.9466 9.7398 0.0211 15 6 8.6478 9.2202 1.9783 16 7 8.7004 8.2866 2.9046 17 14 9.4589 10.8767 2.2746 18 1 8.4347 11.9495 2.2011 19 1 10.0900 10.8855 3.6187 20 1 10.4971 11.1117 1.2392 21 6 6.6327 7.1661 -0.5516 22 6 5.4845 1.1054 -0.0003 23 8 4.2630 0.5428 0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1030 5.0510 0.0001 30 1 8.0248 5.4468 -0.4293 31 1 6.3687 6.4894 1.9805 32 1 8.1667 6.2343 1.8877 33 1 9.1607 8.4586 3.7409 34 1 7.0397 7.4003 -1.5352 35 1 5.5570 7.3294 -0.4851 36 1 6.4309 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030614780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = 15.501948 kcal Electronic energy + Delta-G solvation = -21108.402238 eV Core-core repulsion = 17597.459716 eV Total energy + Delta-G solvation = -3510.942522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.60043 -39.53123 -39.13483 -37.46322 -35.08238 -33.42524 -32.36438 -31.72327 -29.69200 -27.50031 -24.84472 -24.76579 -23.97560 -22.91670 -22.17451 -20.51693 -19.68103 -18.89315 -17.79817 -17.25714 -16.74120 -16.49101 -15.93260 -15.70235 -15.24364 -14.92954 -14.37623 -13.93703 -13.81157 -13.59142 -13.35103 -13.22088 -12.66317 -12.24088 -11.87501 -11.76397 -11.44206 -11.40975 -11.08335 -10.92587 -10.85561 -10.74114 -10.42947 -10.09487 -9.83913 -9.50135 -8.88023 -8.77408 -8.40130 -6.88685 -5.73901 -3.07862 1.01605 1.66154 1.95702 2.49802 3.36341 3.43470 3.45516 3.47309 3.48636 4.31790 4.32528 4.36532 4.51789 4.64421 4.74933 4.93620 5.17355 5.21752 5.21966 5.34662 5.51362 5.51399 5.60605 5.66914 6.04955 6.25527 6.41861 6.46368 6.59081 6.76793 7.26483 7.29416 7.42462 7.59029 7.90502 7.99520 8.46254 9.05970 9.72283 10.59104 11.42864 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.002944 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.451151 B = 9509.708114 C = 9831.952502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.380 3.620 5 N -0.453 5.453 6 C -0.039 4.039 7 C 0.598 3.402 8 O -0.537 6.537 9 N -0.693 5.693 10 C 0.089 3.911 11 C 0.155 3.845 12 N -0.607 5.607 13 C -0.225 4.225 14 H 0.082 0.918 15 C -0.007 4.007 16 N -0.919 5.919 17 Si 0.915 3.085 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.113 3.887 22 C -0.003 4.003 23 O -0.228 6.228 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.407 0.593 30 H 0.113 0.887 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -19.687 -6.661 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.133 3.867 5 N -0.199 5.199 6 C -0.159 4.159 7 C 0.382 3.618 8 O -0.415 6.415 9 N -0.342 5.342 10 C -0.015 4.015 11 C 0.028 3.972 12 N -0.334 5.334 13 C -0.352 4.352 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.566 5.566 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.014 4.014 22 C -0.075 4.075 23 O -0.119 6.119 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.242 0.758 30 H 0.131 0.869 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.131 -18.992 -6.462 24.539 hybrid contribution 0.098 0.168 0.341 0.393 sum -14.033 -18.824 -6.121 24.264 Atomic orbital electron populations 1.21810 0.91266 1.03598 1.04267 1.23045 0.96829 0.79461 1.03018 1.86385 1.09030 1.30697 1.89277 1.23292 0.83424 0.81650 0.98286 1.71132 1.04056 1.21453 1.23276 1.21894 0.90183 0.94229 1.09551 1.16682 0.85997 0.82036 0.77050 1.90833 1.17868 1.81404 1.51377 1.46000 1.11356 1.04919 1.71974 1.24020 0.90926 0.85208 1.01376 1.22719 1.00036 0.83049 0.91350 1.45715 1.60349 1.12647 1.14687 1.18939 1.26861 0.88994 1.00455 0.90065 1.24827 1.00994 0.98291 0.96270 1.69821 1.46889 1.32621 1.07224 0.86160 0.79166 0.83027 0.77142 1.21154 1.21546 1.20995 1.22871 0.95535 0.89387 0.93559 1.24974 0.85714 0.92965 1.03884 1.84375 1.16302 1.39189 1.72053 0.90915 0.90949 0.89493 0.90840 0.90806 0.75811 0.86897 0.95194 0.90373 0.93487 0.93093 0.94472 0.74734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.16 0.38 -0.23 16 2 C 0.05 0.31 6.38 37.16 0.24 0.54 16 3 O -0.25 -2.52 10.19 -40.97 -0.42 -2.93 16 4 C 0.38 4.62 8.98 52.22 0.47 5.09 16 5 N -0.45 -6.58 11.10 -11.72 -0.13 -6.71 16 6 C -0.04 -0.57 6.99 -82.99 -0.58 -1.15 16 7 C 0.60 10.31 7.81 -12.54 -0.10 10.21 16 8 O -0.54 -10.59 16.51 5.26 0.09 -10.51 16 9 N -0.69 -12.03 5.37 -56.44 -0.30 -12.33 16 10 C 0.09 1.81 4.40 -70.15 -0.31 1.51 16 11 C 0.15 3.83 7.33 -2.85 -0.02 3.80 16 12 N -0.61 -16.00 3.70 -177.89 -0.66 -16.66 16 13 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.92 -27.94 11.39 55.49 0.63 -27.30 16 17 Si 0.92 22.47 29.55 -169.99 -5.02 17.45 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 C 0.11 2.35 8.69 -2.97 -0.03 2.33 16 22 C 0.00 -0.04 11.93 29.90 0.36 0.32 16 23 O -0.23 -2.43 10.20 -17.76 -0.18 -2.61 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.41 6.46 8.44 -40.82 -0.34 6.11 16 30 H 0.11 2.41 7.50 -51.93 -0.39 2.02 16 31 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.08 2.16 7.16 -51.93 -0.37 1.79 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.73 8.11 -51.93 -0.42 0.30 16 36 H 0.24 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -34.43 320.73 -5.46 -39.90 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.46 Total: 1.35 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 0.15 Total: 15.53 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.46 Total: -63.00 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.51 Total: -16.05 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.43 -5.46 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030614780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.397 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds