Wall clock time and date at job start Tue Mar 31 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36326 * 108.38064 * 179.97438 * 5 4 3 7 7 C 1.47376 * 126.41290 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00010 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99799 * 0.02606 * 7 6 5 10 10 C 1.46496 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.53943 * 113.74400 * 253.73998 * 10 9 7 12 12 N 1.47803 * 86.04000 * 222.08390 * 11 10 9 13 13 C 1.36939 * 134.46108 * 204.64687 * 12 11 10 14 14 H 1.07993 * 120.00187 * 179.86348 * 13 12 11 15 15 C 1.38815 * 119.99576 * 359.86031 * 13 12 11 16 16 N 1.31623 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46695 * 60.00378 * 17 15 13 19 19 H 1.48498 * 109.47053 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47255 * 300.00496 * 17 15 13 21 21 C 1.47585 * 91.05156 * 24.54564 * 12 11 10 22 22 C 1.35909 * 107.17783 * 359.97438 * 6 5 4 23 23 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 24 24 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 29 29 H 0.97005 * 119.99580 * 359.97438 * 9 7 6 30 30 H 1.09000 * 112.94399 * 25.33025 * 10 9 7 31 31 H 1.09008 * 113.76682 * 336.35014 * 11 10 9 32 32 H 1.09001 * 113.76925 * 107.73929 * 11 10 9 33 33 H 0.96997 * 119.99660 * 179.97438 * 16 15 13 34 34 H 1.08994 * 113.77405 * 221.15164 * 21 12 11 35 35 H 1.09003 * 113.76646 * 89.75658 * 21 12 11 36 36 H 1.08008 * 126.45962 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3038 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5324 3.1429 -0.0012 9 7 6.0358 4.7846 -0.0001 10 6 7.0886 5.8032 0.0003 11 6 7.2598 6.5173 1.3533 12 7 7.3944 7.7598 0.5643 13 6 7.9895 8.9740 0.7812 14 1 7.9466 9.7398 0.0211 15 6 8.6478 9.2202 1.9783 16 7 8.7004 8.2866 2.9046 17 14 9.4589 10.8767 2.2746 18 1 8.4347 11.9495 2.2011 19 1 10.0900 10.8855 3.6187 20 1 10.4971 11.1117 1.2392 21 6 6.6327 7.1661 -0.5516 22 6 5.4845 1.1054 -0.0003 23 8 4.2630 0.5428 0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1030 5.0510 0.0001 30 1 8.0248 5.4468 -0.4293 31 1 6.3687 6.4894 1.9805 32 1 8.1667 6.2343 1.8877 33 1 9.1607 8.4586 3.7409 34 1 7.0397 7.4003 -1.5352 35 1 5.5570 7.3294 -0.4851 36 1 6.4309 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030614780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:20 Heat of formation + Delta-G solvation = -13.320595 kcal Electronic energy + Delta-G solvation = -21109.652077 eV Core-core repulsion = 17597.459716 eV Total energy + Delta-G solvation = -3512.192361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.54286 -40.95199 -39.96491 -39.16416 -36.09962 -35.11339 -33.71185 -32.83870 -30.65686 -29.45123 -26.64139 -26.17226 -24.70499 -24.28113 -23.25434 -21.67405 -21.34928 -20.01727 -18.79216 -18.63839 -18.39591 -17.37773 -17.29987 -16.95913 -16.57766 -16.05669 -15.86229 -15.66753 -15.30648 -14.63589 -14.52647 -13.90973 -13.67818 -13.55110 -13.33913 -13.23163 -12.81078 -12.66307 -12.65089 -12.52941 -12.31691 -11.97972 -11.90395 -11.77689 -11.54726 -11.31929 -10.87800 -10.08050 -9.73339 -8.98376 -7.91355 -5.27389 0.02797 0.83888 0.91298 1.46217 1.50876 1.56910 1.66004 2.06264 2.18708 2.49729 3.21881 3.30474 3.46069 3.73915 3.81947 3.94784 3.97650 4.08120 4.27449 4.29396 4.41504 4.49946 4.66747 4.74239 4.85418 4.88627 4.89436 5.10500 5.20322 5.21993 5.47140 5.62257 5.66102 5.88359 6.31454 6.59688 6.87924 7.09079 7.57907 8.50689 9.25433 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.002944 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.451151 B = 9509.708114 C = 9831.952502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.256 6.256 4 C 0.386 3.614 5 N -0.484 5.484 6 C -0.074 4.074 7 C 0.602 3.398 8 O -0.567 6.567 9 N -0.689 5.689 10 C 0.119 3.881 11 C 0.153 3.847 12 N -0.638 5.638 13 C -0.237 4.237 14 H 0.092 0.908 15 C -0.070 4.070 16 N -0.956 5.956 17 Si 0.986 3.014 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.273 1.273 21 C 0.122 3.878 22 C 0.033 3.967 23 O -0.214 6.214 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.415 0.585 30 H 0.104 0.896 31 H 0.021 0.979 32 H 0.039 0.961 33 H 0.249 0.751 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.787 -20.786 -7.841 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.165 6.165 4 C 0.139 3.861 5 N -0.230 5.230 6 C -0.192 4.192 7 C 0.388 3.612 8 O -0.446 6.446 9 N -0.339 5.339 10 C 0.013 3.987 11 C 0.026 3.974 12 N -0.365 5.365 13 C -0.365 4.365 14 H 0.109 0.891 15 C -0.263 4.263 16 N -0.604 5.604 17 Si 0.813 3.187 18 H -0.200 1.200 19 H -0.222 1.222 20 H -0.199 1.199 21 C -0.004 4.004 22 C -0.040 4.040 23 O -0.105 6.105 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.252 0.748 30 H 0.122 0.878 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -15.362 -20.111 -7.685 26.448 hybrid contribution 0.343 0.357 0.674 0.836 sum -15.019 -19.754 -7.012 25.787 Atomic orbital electron populations 1.21864 0.89837 1.05080 1.03831 1.23453 0.97915 0.77740 1.04207 1.86425 1.07798 1.33356 1.88939 1.23296 0.84204 0.81390 0.97231 1.71009 1.04234 1.22975 1.24798 1.21449 0.89776 0.94599 1.13399 1.16962 0.86321 0.82156 0.75734 1.90813 1.19318 1.81847 1.52654 1.45779 1.10999 1.04750 1.72345 1.23329 0.91449 0.85959 0.97915 1.22588 0.97796 0.84038 0.92979 1.46054 1.61309 1.12474 1.16642 1.19414 1.26363 0.90050 1.00653 0.89076 1.25761 1.02219 1.02075 0.96273 1.70038 1.48207 1.34690 1.07493 0.85048 0.78303 0.78691 0.76640 1.20038 1.22172 1.19914 1.23004 0.96188 0.88314 0.92866 1.25578 0.86666 0.91950 0.99812 1.84429 1.15940 1.38495 1.71587 0.91468 0.91266 0.86985 0.89499 0.89756 0.74779 0.87831 0.96072 0.94276 0.94206 0.91168 0.92161 0.71568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 71.98 0.74 -0.15 16 2 C 0.04 0.39 6.38 71.98 0.46 0.85 16 3 O -0.26 -4.85 10.19 -64.17 -0.65 -5.50 16 4 C 0.39 8.73 8.98 130.43 1.17 9.91 16 5 N -0.48 -13.54 11.10 -419.39 -4.65 -18.19 16 6 C -0.07 -2.06 6.99 40.31 0.28 -1.78 16 7 C 0.60 20.51 7.81 86.65 0.68 21.19 16 8 O -0.57 -22.27 16.51 -4.08 -0.07 -22.34 16 9 N -0.69 -23.73 5.37 -450.73 -2.42 -26.15 16 10 C 0.12 4.87 4.40 46.75 0.21 5.07 16 11 C 0.15 7.80 7.33 86.44 0.63 8.43 16 12 N -0.64 -33.87 3.70 -716.73 -2.65 -36.53 16 13 C -0.24 -13.59 10.70 84.03 0.90 -12.69 16 14 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 15 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 16 N -0.96 -59.93 11.39 21.65 0.25 -59.68 16 17 Si 0.99 46.65 29.55 68.60 2.03 48.68 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.12 4.92 8.69 86.48 0.75 5.68 16 22 C 0.03 0.65 11.93 67.28 0.80 1.45 16 23 O -0.21 -4.00 10.20 18.89 0.19 -3.81 16 24 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.42 12.96 8.44 -92.70 -0.78 12.17 16 30 H 0.10 4.47 7.50 -2.39 -0.02 4.46 16 31 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.04 2.28 7.16 -2.39 -0.02 2.26 16 33 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 36 H 0.27 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -75.80 320.73 -0.56 -76.36 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.33 Total: 12.86 kcal Atomic # 6 Polarization: 27.21 SS G_CDS: 7.09 Total: 34.30 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -9.48 Total: -140.55 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.53 Total: -31.65 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.80 -0.56 -76.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030614780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.040 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds