Wall clock time and date at job start Tue Mar 31 2020 05:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46906 * 2 1 4 4 C 1.35732 * 116.99813 * 179.97438 * 3 2 1 5 5 C 1.41849 * 126.78539 * 179.97438 * 4 3 2 6 6 C 1.36667 * 103.81189 * 179.70553 * 5 4 3 7 7 C 1.47537 * 126.87951 * 180.27987 * 6 5 4 8 8 O 1.21581 * 120.00541 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99724 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99954 * 180.02562 * 9 7 6 11 11 C 1.53947 * 113.74495 * 253.74537 * 10 9 7 12 12 N 1.47810 * 86.03768 * 222.08344 * 11 10 9 13 13 C 1.36931 * 134.45757 * 204.64109 * 12 11 10 14 14 H 1.08002 * 120.00309 * 179.86480 * 13 12 11 15 15 C 1.38814 * 120.00009 * 359.86888 * 13 12 11 16 16 N 1.31624 * 119.99789 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47287 * 90.00393 * 17 15 13 19 19 H 1.48507 * 109.46868 * 210.00150 * 17 15 13 20 20 H 1.48493 * 109.47423 * 329.99940 * 17 15 13 21 21 C 1.47581 * 91.05004 * 24.54781 * 12 11 10 22 22 O 1.34661 * 106.24103 * 0.26168 * 6 5 4 23 23 N 1.20874 * 111.63162 * 0.02562 * 22 6 5 24 24 H 1.08999 * 109.47377 * 300.00460 * 1 2 3 25 25 H 1.09003 * 109.46932 * 60.00110 * 1 2 3 26 26 H 1.08991 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47260 * 239.99984 * 2 1 3 28 28 H 1.08997 * 109.46816 * 119.99448 * 2 1 3 29 29 H 1.08002 * 128.09751 * 359.97323 * 5 4 3 30 30 H 0.96993 * 120.00599 * 0.02562 * 9 7 6 31 31 H 1.09004 * 112.94105 * 25.33737 * 10 9 7 32 32 H 1.09005 * 113.76674 * 336.34893 * 11 10 9 33 33 H 1.09003 * 113.76676 * 107.74020 * 11 10 9 34 34 H 0.96997 * 119.99459 * 179.97438 * 16 15 13 35 35 H 1.09003 * 113.77242 * 221.15113 * 21 12 11 36 36 H 1.09002 * 113.76879 * 89.75483 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3519 1.5252 0.0005 5 6 4.0452 2.7628 0.0001 6 6 5.3625 2.3988 0.0078 7 6 6.5302 3.3006 0.0166 8 8 6.3679 4.5055 0.0180 9 7 7.7769 2.7886 0.0241 10 6 8.9364 3.6840 0.0334 11 6 9.6772 3.7529 -1.3144 12 7 10.9207 3.7061 -0.5167 13 6 12.2092 4.1205 -0.7239 14 1 12.9557 3.9666 0.0413 15 6 12.5561 4.7385 -1.9175 16 7 11.6462 4.9266 -2.8499 17 14 14.3137 5.3046 -2.1999 18 1 15.0918 4.2078 -2.8296 19 1 14.3143 6.4893 -3.0953 20 1 14.9321 5.6668 -0.8994 21 6 10.2156 3.0358 0.5931 22 8 5.3812 1.0523 0.0062 23 7 4.2640 0.5912 -0.0018 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.6293 3.7595 -0.0010 30 1 7.9065 1.8273 0.0234 31 1 8.7154 4.6610 0.4631 32 1 9.5259 2.8761 -1.9442 33 1 9.5314 4.6919 -1.8483 34 1 11.8886 5.3588 -3.6837 35 1 10.4990 3.4033 1.5794 36 1 10.2229 1.9479 0.5249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030689432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:31 Heat of formation + Delta-G solvation = 53.622717 kcal Electronic energy + Delta-G solvation = -21075.763230 eV Core-core repulsion = 17566.473749 eV Total energy + Delta-G solvation = -3509.289481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.12706 -39.68386 -39.25934 -37.64724 -33.96057 -33.56007 -32.25572 -31.70773 -31.34871 -27.61712 -25.03786 -24.89024 -23.78349 -23.47696 -22.37846 -20.82177 -19.86091 -18.79077 -18.12836 -17.13080 -16.85416 -16.25725 -16.08335 -15.94469 -15.04155 -14.86284 -14.52184 -14.14463 -13.90199 -13.70286 -13.43709 -13.07991 -12.76487 -12.27592 -12.01694 -11.57297 -11.54263 -11.50915 -11.49243 -10.93572 -10.83830 -10.54147 -10.25951 -9.99650 -9.98939 -9.59498 -9.54647 -8.85021 -8.64940 -6.97241 -5.81201 -3.15517 0.66129 1.91444 2.33832 2.52849 3.03773 3.35855 3.39762 3.44392 3.45417 3.89201 4.41766 4.47825 4.50499 4.61843 4.82220 4.84100 5.00133 5.08770 5.23302 5.34487 5.42110 5.47664 5.50842 5.60209 5.91123 6.11338 6.29803 6.44939 6.57257 6.68933 7.17076 7.23262 7.45116 7.57891 7.88870 7.91976 8.14253 8.98802 9.65205 10.49984 11.35593 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.055963 B = 0.002747 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.210635 B =10188.667320 C =10242.586225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.206 3.794 5 C -0.160 4.160 6 C -0.048 4.048 7 C 0.600 3.400 8 O -0.510 6.510 9 N -0.695 5.695 10 C 0.088 3.912 11 C 0.154 3.846 12 N -0.607 5.607 13 C -0.226 4.226 14 H 0.083 0.917 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.915 3.085 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.114 3.886 22 O 0.116 5.884 23 N -0.393 5.393 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.190 0.810 30 H 0.405 0.595 31 H 0.116 0.884 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.255 0.745 35 H 0.053 0.947 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.113 -9.692 6.537 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.009 3.991 5 C -0.183 4.183 6 C -0.114 4.114 7 C 0.382 3.618 8 O -0.385 6.385 9 N -0.345 5.345 10 C -0.016 4.016 11 C 0.028 3.972 12 N -0.333 5.333 13 C -0.354 4.354 14 H 0.101 0.899 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.745 3.255 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.013 4.013 22 O 0.050 5.950 23 N -0.118 5.118 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.207 0.793 30 H 0.240 0.760 31 H 0.134 0.866 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.217 -9.765 6.348 22.471 hybrid contribution 0.750 0.189 -0.347 0.847 sum -18.467 -9.576 6.002 21.651 Atomic orbital electron populations 1.21798 0.92135 1.03223 1.03724 1.22841 0.95921 0.80549 1.02498 1.86220 1.13025 1.30261 1.89324 1.21841 0.85801 0.90546 1.00918 1.22179 0.90146 0.99236 1.06723 1.24326 0.96880 0.84142 1.06071 1.16529 0.81188 0.86075 0.78035 1.90894 1.84724 1.12768 1.50119 1.46118 1.05116 1.11251 1.71986 1.24161 0.81467 0.94246 1.01706 1.22742 0.82402 1.00887 0.91202 1.45712 1.06198 1.66800 1.14628 1.18978 0.83691 1.32139 1.00553 0.89942 1.24834 0.98166 1.01071 0.96245 1.69821 1.32206 1.47314 1.07140 0.86076 0.83629 0.78004 0.77761 1.21549 1.21546 1.20507 1.22877 0.88808 0.95833 0.93786 1.84948 1.22779 1.18754 1.68480 1.73990 0.90467 1.22182 1.25133 0.91321 0.91296 0.89940 0.91486 0.91527 0.79296 0.76041 0.86597 0.95042 0.90210 0.93451 0.92918 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.47 6.38 37.16 0.24 0.70 16 3 O -0.28 -3.12 10.21 -18.90 -0.19 -3.31 16 4 C 0.21 2.54 8.00 -16.72 -0.13 2.40 16 5 C -0.16 -1.95 10.97 -38.77 -0.43 -2.37 16 6 C -0.05 -0.62 7.29 -36.36 -0.26 -0.89 16 7 C 0.60 9.10 7.82 -12.47 -0.10 9.00 16 8 O -0.51 -9.37 16.53 5.29 0.09 -9.29 16 9 N -0.69 -10.20 5.37 -56.38 -0.30 -10.50 16 10 C 0.09 1.62 4.40 -70.14 -0.31 1.31 16 11 C 0.15 3.55 7.33 -2.84 -0.02 3.53 16 12 N -0.61 -15.15 3.70 -177.87 -0.66 -15.81 16 13 C -0.23 -6.23 10.70 -15.06 -0.16 -6.39 16 14 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 16 N -0.92 -27.11 11.39 55.49 0.63 -26.47 16 17 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.11 2.16 8.69 -2.97 -0.03 2.14 16 22 O 0.12 1.45 11.03 15.50 0.17 1.63 16 23 N -0.39 -5.04 11.50 30.47 0.35 -4.69 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.40 4.90 8.54 -40.82 -0.35 4.55 16 31 H 0.12 2.26 7.51 -51.93 -0.39 1.87 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 2.10 7.16 -51.93 -0.37 1.72 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -32.14 320.46 -5.48 -37.62 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.46 Total: 0.40 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.91 Total: 8.71 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.02 Total: -57.47 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.14 -5.48 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030689432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.245 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds