Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35730 * 117.00225 * 2 1 4 4 C 1.41858 * 126.79038 * 180.32364 * 3 2 1 5 5 C 1.36663 * 103.81400 * 180.14065 * 4 3 2 6 6 C 1.47537 * 126.88090 * 179.87512 * 5 4 3 7 7 O 1.21585 * 120.00033 * 359.71508 * 6 5 4 8 8 N 1.34779 * 119.99945 * 179.70912 * 6 5 4 9 9 C 1.46504 * 119.99668 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46966 * 180.02562 * 9 8 6 11 11 H 1.09001 * 112.77951 * 56.27255 * 10 9 8 12 12 C 1.53492 * 113.46722 * 187.05955 * 10 9 8 13 13 C 1.53503 * 83.34380 * 140.84700 * 12 10 9 14 14 N 1.47066 * 113.46558 * 285.49627 * 10 9 8 15 15 C 1.36937 * 136.06113 * 37.83696 * 14 10 9 16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 10 17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 10 18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47363 * 60.00463 * 19 17 15 21 21 H 1.48506 * 109.46719 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47174 * 300.00290 * 19 17 15 23 23 O 1.34660 * 106.24000 * 359.61759 * 5 4 3 24 24 N 1.20882 * 111.63477 * 0.26016 * 23 5 4 25 25 H 1.08998 * 109.47166 * 59.99983 * 1 2 3 26 26 H 1.08996 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47097 * 299.99861 * 1 2 3 28 28 H 1.07998 * 128.09022 * 0.02562 * 4 3 2 29 29 H 0.96999 * 119.99977 * 0.02562 * 8 6 5 30 30 H 1.09002 * 109.47023 * 59.99980 * 9 8 6 31 31 H 1.09003 * 109.47215 * 299.99892 * 9 8 6 32 32 H 1.08996 * 114.20649 * 254.43356 * 12 10 9 33 33 H 1.08998 * 114.21061 * 27.06495 * 12 10 9 34 34 H 1.09003 * 113.46532 * 219.15331 * 13 12 10 35 35 H 1.09000 * 113.46688 * 88.71677 * 13 12 10 36 36 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0064 5 6 3.5391 2.8138 -0.0001 6 6 4.7785 3.6141 -0.0003 7 8 5.8604 3.0594 -0.0013 8 7 4.7114 4.9603 0.0005 9 6 5.9421 5.7550 -0.0003 10 6 5.5880 7.2435 0.0015 11 1 4.9485 7.5241 0.8384 12 6 6.8057 8.1617 -0.1722 13 6 5.8428 8.9756 -1.0477 14 7 5.1003 7.7310 -1.2975 15 6 4.3083 7.2398 -2.3008 16 1 3.8814 6.2514 -2.2169 17 6 4.0533 8.0128 -3.4253 18 7 4.5732 9.2176 -3.5273 19 14 2.9724 7.3429 -4.7936 20 1 1.6228 7.0384 -4.2542 21 1 2.8573 8.3553 -5.8740 22 1 3.5782 6.1024 -5.3408 23 8 2.2759 3.2802 0.0004 24 7 1.4686 2.3805 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.2442 0.7262 -0.0127 29 1 3.8482 5.4028 0.0015 30 1 6.5252 5.5209 -0.8910 31 1 6.5270 5.5200 0.8890 32 1 7.1167 8.6690 0.7410 33 1 7.6339 7.7076 -0.7162 34 1 6.3117 9.3880 -1.9411 35 1 5.2712 9.7177 -0.4903 36 1 4.3954 9.7576 -4.3132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038168617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = 59.005780 kcal Electronic energy + Delta-G solvation = -21771.448566 eV Core-core repulsion = 18262.392512 eV Total energy + Delta-G solvation = -3509.056054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.05144 -39.57307 -39.05775 -38.14229 -34.40632 -33.28375 -32.28707 -31.89519 -28.24976 -27.93133 -27.70700 -24.00854 -23.50183 -23.39046 -21.85760 -20.77808 -19.52355 -18.80320 -18.03076 -16.98747 -16.74995 -16.21453 -15.82760 -15.76465 -15.33008 -15.04797 -14.59914 -14.22908 -13.85579 -13.61409 -13.35193 -13.01535 -12.48446 -12.12667 -12.01300 -11.60324 -11.55073 -11.16152 -11.02794 -10.78774 -10.63467 -10.32736 -9.94854 -9.92689 -9.87112 -9.50335 -9.33475 -8.83560 -8.78984 -6.93735 -5.79678 -3.12669 0.72293 1.97665 2.46599 2.59723 3.07279 3.38150 3.42812 3.43244 3.46576 3.96924 4.41039 4.63143 4.82781 4.87986 4.88677 5.08120 5.15406 5.20911 5.34766 5.51139 5.54252 5.63964 5.85353 5.98823 6.23974 6.33271 6.51748 6.58272 6.70054 6.71259 7.19037 7.34724 7.50867 7.55235 7.94086 7.95750 8.15020 8.99770 9.67455 10.58863 11.37285 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.004911 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.026248 B = 5699.824576 C = 6974.723776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.201 3.799 4 C -0.161 4.161 5 C -0.047 4.047 6 C 0.599 3.401 7 O -0.519 6.519 8 N -0.692 5.692 9 C 0.119 3.881 10 C 0.126 3.874 11 H 0.051 0.949 12 C -0.160 4.160 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.218 4.218 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.917 5.917 19 Si 0.907 3.093 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.285 1.285 23 O 0.121 5.879 24 N -0.390 5.390 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.189 0.811 29 H 0.412 0.588 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 -12.264 9.479 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.004 3.996 4 C -0.184 4.184 5 C -0.113 4.113 6 C 0.381 3.619 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.005 4.005 10 C 0.018 3.982 11 H 0.068 0.932 12 C -0.199 4.199 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.345 4.345 16 H 0.098 0.902 17 C -0.201 4.201 18 N -0.564 5.564 19 Si 0.737 3.263 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 O 0.055 5.945 24 N -0.113 5.113 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.079 0.921 28 H 0.207 0.793 29 H 0.247 0.753 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.746 -12.505 9.128 15.929 hybrid contribution -0.867 -0.503 -0.821 1.295 sum -4.613 -13.009 8.307 16.109 Atomic orbital electron populations 1.23093 0.76664 1.04144 1.02552 1.86203 1.22700 1.20458 1.89485 1.21892 0.90661 0.85825 1.01213 1.22133 0.94314 0.94945 1.06982 1.24237 0.87149 0.93883 1.06077 1.16488 0.84870 0.82343 0.78221 1.90856 1.26368 1.71382 1.51033 1.45930 1.12095 1.04726 1.71351 1.22019 0.85285 0.91212 1.01987 1.22447 0.94300 0.90463 0.90993 0.93158 1.23668 0.96889 0.99327 1.00016 1.22029 0.89512 0.89571 0.96300 1.45672 1.58057 1.14622 1.14380 1.18795 1.22534 0.98746 0.94391 0.90223 1.24754 1.00709 0.96280 0.98343 1.69813 1.47695 1.09606 1.29268 0.86288 0.80406 0.77817 0.81817 1.21074 1.21508 1.21105 1.84993 1.11856 1.29511 1.68182 1.74012 1.16008 0.96642 1.24675 0.92068 0.87575 0.92137 0.79339 0.75259 0.90350 0.91484 0.92256 0.90117 0.90946 0.95647 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.37 10.57 -18.90 -0.20 -3.57 16 3 C 0.20 2.74 8.00 -16.72 -0.13 2.61 16 4 C -0.16 -2.14 10.97 -38.77 -0.43 -2.57 16 5 C -0.05 -0.69 7.29 -36.36 -0.26 -0.95 16 6 C 0.60 9.69 7.82 -12.47 -0.10 9.59 16 7 O -0.52 -9.53 16.91 5.29 0.09 -9.44 16 8 N -0.69 -11.16 5.33 -61.34 -0.33 -11.49 16 9 C 0.12 1.98 5.52 -4.04 -0.02 1.96 16 10 C 0.13 2.28 4.10 -72.40 -0.30 1.98 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.16 -2.74 8.03 -26.22 -0.21 -2.95 16 13 C 0.15 3.34 7.39 -8.50 -0.06 3.28 16 14 N -0.60 -14.15 3.65 -176.99 -0.65 -14.79 16 15 C -0.22 -5.70 10.55 -15.06 -0.16 -5.86 16 16 H 0.08 2.00 7.51 -52.49 -0.39 1.61 16 17 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 18 N -0.92 -26.53 11.51 55.49 0.64 -25.89 16 19 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 O 0.12 1.80 11.03 15.50 0.17 1.98 16 24 N -0.39 -5.74 11.50 30.47 0.35 -5.39 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.19 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.41 6.50 8.20 -40.82 -0.33 6.17 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 34 H 0.07 1.80 7.13 -51.93 -0.37 1.43 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -31.18 319.73 -5.27 -36.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.46 Total: 2.21 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.68 Total: 8.23 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.02 Total: -57.57 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.04 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.18 -5.27 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038168617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.460 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds