Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35731 * 117.00444 * 2 1 4 4 C 1.41853 * 126.78624 * 179.97438 * 3 2 1 5 5 C 1.36662 * 103.80692 * 180.02562 * 4 3 2 6 6 C 1.47546 * 126.87735 * 180.02562 * 5 4 3 7 7 O 1.21579 * 120.00098 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00126 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99871 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46786 * 179.97438 * 9 8 6 11 11 H 1.08997 * 112.78530 * 303.72872 * 10 9 8 12 12 C 1.53499 * 113.46472 * 172.93553 * 10 9 8 13 13 C 1.53749 * 83.25991 * 218.98716 * 12 10 9 14 14 N 1.47072 * 113.46180 * 74.50654 * 10 9 8 15 15 C 1.36931 * 136.06174 * 321.86155 * 14 10 9 16 16 H 1.08002 * 120.00098 * 359.97438 * 15 14 10 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 10 18 18 N 1.31624 * 119.99535 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00484 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00576 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00326 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00037 * 19 17 15 23 23 O 1.34657 * 106.24601 * 0.25854 * 5 4 3 24 24 N 1.20881 * 111.63067 * 359.52830 * 23 5 4 25 25 H 1.08994 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47045 * 300.00343 * 1 2 3 27 27 H 1.09007 * 109.46633 * 59.99928 * 1 2 3 28 28 H 1.07990 * 128.09394 * 359.97438 * 4 3 2 29 29 H 0.97001 * 119.99969 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46704 * 59.99925 * 9 8 6 31 31 H 1.08998 * 109.46915 * 299.99782 * 9 8 6 32 32 H 1.09000 * 114.20984 * 332.74702 * 12 10 9 33 33 H 1.09004 * 114.19718 * 105.37227 * 12 10 9 34 34 H 1.09004 * 113.47201 * 271.50865 * 13 12 10 35 35 H 1.09001 * 113.55046 * 140.98942 * 13 12 10 36 36 H 0.97005 * 119.99717 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4503 0.0005 5 6 3.5392 2.8136 0.0009 6 6 4.7786 3.6140 0.0009 7 8 5.8605 3.0593 0.0011 8 7 4.7116 4.9601 0.0018 9 6 5.9424 5.7548 0.0024 10 6 5.5882 7.2433 0.0028 11 1 4.9480 7.5250 -0.8331 12 6 6.8062 8.1612 0.1766 13 6 5.8396 8.9763 1.0514 14 7 5.1017 7.7291 1.3029 15 6 4.3067 7.2387 2.3041 16 1 3.8752 6.2524 2.2169 17 6 4.0544 8.0094 3.4307 18 7 4.5790 9.2119 3.5362 19 14 2.9693 7.3406 4.7962 20 1 1.5558 7.7106 4.5313 21 1 3.0927 5.8615 4.8468 22 1 3.3970 7.9177 6.0959 23 8 2.2760 3.2801 0.0064 24 7 1.4687 2.3804 0.0000 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 4.2442 0.7260 0.0014 29 1 3.8485 5.4027 0.0020 30 1 6.5263 5.5207 -0.8877 31 1 6.5262 5.5196 0.8923 32 1 7.6336 7.7076 0.7222 33 1 7.1184 8.6671 -0.7371 34 1 5.2655 9.7149 0.4919 35 1 6.3059 9.3924 1.9444 36 1 4.4024 9.7507 4.3233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038168619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = 58.999810 kcal Electronic energy + Delta-G solvation = -21772.025904 eV Core-core repulsion = 18262.969591 eV Total energy + Delta-G solvation = -3509.056313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.05206 -39.57218 -39.05720 -38.13368 -34.40525 -33.28414 -32.28845 -31.89433 -28.25165 -27.92953 -27.70176 -24.00758 -23.50151 -23.39006 -21.85719 -20.77816 -19.52908 -18.80396 -18.03076 -16.98756 -16.75470 -16.21412 -15.82958 -15.76240 -15.33184 -15.04757 -14.60086 -14.22518 -13.85285 -13.61223 -13.35026 -13.01505 -12.48484 -12.12657 -12.00959 -11.60470 -11.55326 -11.16568 -11.03643 -10.78449 -10.63450 -10.32315 -9.94787 -9.92272 -9.85969 -9.50339 -9.33810 -8.84044 -8.79025 -6.93883 -5.80028 -3.13070 0.72356 1.97707 2.46619 2.59724 3.07400 3.37235 3.42941 3.44119 3.46593 3.96965 4.40693 4.63153 4.82759 4.88007 4.88684 5.08164 5.15297 5.20872 5.34772 5.50709 5.54263 5.63872 5.85443 5.98845 6.24314 6.32786 6.51813 6.58164 6.70055 6.71091 7.19009 7.34423 7.50873 7.55434 7.93956 7.95709 8.15053 8.99484 9.67169 10.58507 11.36917 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.004912 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.286903 B = 5698.903828 C = 6975.143995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.201 3.799 4 C -0.161 4.161 5 C -0.047 4.047 6 C 0.599 3.401 7 O -0.519 6.519 8 N -0.692 5.692 9 C 0.119 3.881 10 C 0.126 3.874 11 H 0.051 0.949 12 C -0.160 4.160 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.217 4.217 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.917 5.917 19 Si 0.907 3.093 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.290 1.290 23 O 0.121 5.879 24 N -0.390 5.390 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.189 0.811 29 H 0.412 0.588 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -12.278 -9.506 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.189 6.189 3 C 0.004 3.996 4 C -0.184 4.184 5 C -0.113 4.113 6 C 0.381 3.619 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.005 4.005 10 C 0.018 3.982 11 H 0.068 0.932 12 C -0.199 4.199 13 C 0.025 3.975 14 N -0.327 5.327 15 C -0.344 4.344 16 H 0.098 0.902 17 C -0.201 4.201 18 N -0.564 5.564 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.206 1.206 22 H -0.216 1.216 23 O 0.055 5.945 24 N -0.113 5.113 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.207 0.793 29 H 0.247 0.753 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.733 -12.533 -9.156 15.964 hybrid contribution -0.886 -0.484 0.812 1.295 sum -4.619 -13.017 -8.344 16.137 Atomic orbital electron populations 1.23094 0.76663 1.04143 1.02550 1.86204 1.22701 1.20462 1.89485 1.21890 0.90661 0.85823 1.01208 1.22130 0.94312 0.94943 1.06992 1.24238 0.87150 0.93886 1.06061 1.16488 0.84868 0.82343 0.78215 1.90854 1.26372 1.71380 1.51031 1.45929 1.12092 1.04728 1.71356 1.22015 0.85284 0.91199 1.01980 1.22450 0.94348 0.90479 0.90960 0.93180 1.23707 0.96862 0.99318 0.99987 1.22089 0.89544 0.89528 0.96303 1.45726 1.58081 1.14515 1.14385 1.18847 1.22272 0.98982 0.94302 0.90168 1.24757 1.00703 0.96333 0.98337 1.69826 1.47558 1.09829 1.29148 0.86200 0.80218 0.78132 0.81742 1.21551 1.20627 1.21589 1.84991 1.11858 1.29515 1.68180 1.74009 1.16014 0.96644 1.24683 0.87574 0.92060 0.92147 0.79339 0.75270 0.91488 0.90346 0.90103 0.92263 0.95682 0.90875 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.38 10.57 -18.90 -0.20 -3.58 16 3 C 0.20 2.75 8.00 -16.72 -0.13 2.61 16 4 C -0.16 -2.15 10.97 -38.77 -0.43 -2.57 16 5 C -0.05 -0.69 7.29 -36.36 -0.26 -0.95 16 6 C 0.60 9.70 7.82 -12.46 -0.10 9.61 16 7 O -0.52 -9.54 16.91 5.30 0.09 -9.45 16 8 N -0.69 -11.17 5.33 -61.35 -0.33 -11.50 16 9 C 0.12 1.98 5.52 -4.04 -0.02 1.96 16 10 C 0.13 2.27 4.10 -72.39 -0.30 1.98 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.16 -2.74 8.04 -26.08 -0.21 -2.95 16 13 C 0.15 3.33 7.41 -8.37 -0.06 3.27 16 14 N -0.60 -14.13 3.65 -176.82 -0.65 -14.78 16 15 C -0.22 -5.68 10.55 -15.06 -0.16 -5.84 16 16 H 0.08 2.02 7.50 -52.49 -0.39 1.63 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -26.52 11.50 55.49 0.64 -25.88 16 19 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 O 0.12 1.81 11.03 15.51 0.17 1.98 16 24 N -0.39 -5.75 11.50 30.47 0.35 -5.40 16 25 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.19 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.41 6.50 8.19 -40.82 -0.33 6.16 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.82 7.11 -51.93 -0.37 1.45 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -31.20 319.72 -5.27 -36.47 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.46 Total: 2.17 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.68 Total: 8.24 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.02 Total: -57.55 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.06 Total: -11.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.20 -5.27 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038168619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.473 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds