Wall clock time and date at job start Tue Mar 31 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21697 * 120.00172 * 359.97438 * 4 3 2 6 6 C 1.46662 * 119.99992 * 180.02562 * 4 3 2 7 7 C 1.37925 * 126.21623 * 179.97438 * 6 4 3 8 8 C 1.39922 * 107.10930 * 179.97438 * 7 6 4 9 9 F 1.35107 * 126.07760 * 180.02562 * 8 7 6 10 10 C 1.35567 * 107.84619 * 0.02562 * 8 7 6 11 11 N 1.35751 * 108.82763 * 359.72786 * 10 8 7 12 12 H 0.97008 * 125.67244 * 180.30110 * 11 10 8 13 13 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 14 14 C 1.54321 * 102.96961 * 206.45980 * 13 2 1 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 2 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46764 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46723 * 120.00066 * 20 18 16 23 23 H 1.48499 * 109.47140 * 239.99844 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 26 26 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 27 27 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 28 28 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 29 29 H 1.08000 * 126.44110 * 359.96256 * 7 6 4 30 30 H 1.07995 * 125.58411 * 180.02562 * 10 8 7 31 31 H 1.08998 * 110.70855 * 88.08785 * 13 2 1 32 32 H 1.08998 * 110.85957 * 324.90400 * 13 2 1 33 33 H 1.08998 * 109.88101 * 262.77542 * 14 13 2 34 34 H 1.08997 * 110.01327 * 141.67909 * 14 13 2 35 35 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 36 36 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 37 37 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1163 1.7964 1.9691 6 6 2.3123 3.5609 1.0346 7 6 2.1219 4.5059 2.0210 8 6 2.7919 5.6653 1.6150 9 9 2.8547 6.8288 2.2990 10 6 3.3669 5.4137 0.4134 11 7 3.0869 4.1352 0.0529 12 1 3.3822 3.6997 -0.7621 13 6 2.0901 -0.8107 -1.2023 14 6 3.4707 -1.2757 -0.6934 15 7 3.4280 -1.2429 0.7759 16 6 4.4639 -1.5649 1.6117 17 1 4.3314 -1.5089 2.6821 18 6 5.6841 -1.9633 1.0833 19 7 5.8454 -2.0320 -0.2211 20 14 7.0973 -2.4018 2.2235 21 1 6.6619 -2.2444 3.6345 22 1 7.5061 -3.8096 1.9861 23 1 8.2469 -1.5007 1.9562 24 6 2.0853 -0.8066 1.2002 25 1 -0.3633 0.4753 0.9111 26 1 -0.3634 0.5514 -0.8672 27 1 -0.3633 -1.0268 -0.0440 28 1 2.5890 1.6829 -0.7448 29 1 1.5611 4.3756 2.9347 30 1 3.9556 6.1139 -0.1605 31 1 2.1972 -0.1737 -2.0803 32 1 1.4525 -1.6665 -1.4240 33 1 4.2461 -0.6014 -1.0569 34 1 3.6720 -2.2907 -1.0358 35 1 6.6982 -2.3100 -0.5905 36 1 1.4520 -1.6704 1.4024 37 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046499385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:03 Heat of formation + Delta-G solvation = -5.683463 kcal Electronic energy + Delta-G solvation = -22340.120132 eV Core-core repulsion = 18840.631731 eV Total energy + Delta-G solvation = -3499.488401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.55278 -41.33256 -39.50159 -37.19018 -34.06728 -32.13776 -30.88047 -30.27853 -29.01187 -28.60337 -25.71672 -23.99585 -23.08177 -21.04861 -20.48687 -20.23200 -19.24051 -18.83899 -16.92674 -16.06713 -15.78059 -15.65537 -15.41845 -14.82689 -14.73890 -14.62987 -13.92640 -13.82703 -13.53739 -13.43403 -13.17646 -12.81229 -12.11634 -12.00205 -11.84904 -11.77251 -11.69707 -10.94014 -10.91543 -10.52136 -10.44006 -10.10665 -10.05695 -9.69590 -9.53341 -9.00867 -8.77380 -8.61840 -8.33396 -6.83616 -5.74305 -3.05978 1.35120 2.36869 2.83689 3.23986 3.38269 3.44944 3.47281 3.50992 4.46574 4.49011 4.77555 4.88777 5.06768 5.19424 5.31722 5.41954 5.52581 5.56143 5.65805 5.88623 5.93089 6.04396 6.09186 6.27669 6.32082 6.33935 6.48227 6.60526 6.75139 6.79751 7.03077 7.09459 7.49201 7.50982 7.72680 7.78171 8.22520 8.39172 9.20670 9.80544 10.45908 11.37944 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.005459 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.969522 B = 5127.683577 C = 6159.275663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.699 5.699 4 C 0.591 3.409 5 O -0.522 6.522 6 C -0.013 4.013 7 C -0.137 4.137 8 C 0.000 4.000 9 F -0.130 7.130 10 C -0.005 4.005 11 N -0.525 5.525 12 H 0.426 0.574 13 C -0.146 4.146 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.910 3.090 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.130 3.870 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.391 0.609 29 H 0.159 0.841 30 H 0.181 0.819 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.250 0.750 36 H 0.027 0.973 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 12.033 -4.638 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.348 5.348 4 C 0.377 3.623 5 O -0.397 6.397 6 C -0.128 4.128 7 C -0.164 4.164 8 C -0.025 4.025 9 F -0.109 7.109 10 C -0.141 4.141 11 N -0.122 5.122 12 H 0.265 0.735 13 C -0.184 4.184 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.003 3.997 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.225 0.775 29 H 0.176 0.824 30 H 0.198 0.802 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.975 11.557 -4.078 14.622 hybrid contribution 1.447 -0.015 -0.157 1.455 sum -6.528 11.543 -4.235 13.921 Atomic orbital electron populations 1.21992 0.94073 1.02210 1.02488 1.21589 0.92654 0.80167 0.98570 1.45677 1.54104 1.13172 1.21893 1.16828 0.80224 0.82525 0.82761 1.90813 1.39166 1.75095 1.34675 1.20514 1.04407 0.95344 0.92554 1.21275 1.03800 0.90863 1.00417 1.16469 1.08153 0.84066 0.93835 1.91438 1.95718 1.44942 1.78754 1.21704 1.06620 0.87601 0.98215 1.41760 1.40263 1.10884 1.19318 0.73500 1.23282 1.00573 0.98912 0.95683 1.21157 0.89841 1.00007 0.83812 1.44449 1.07817 1.78900 1.01749 1.19130 0.89291 1.37325 0.89057 0.90460 1.24756 0.97758 1.02040 0.96032 1.69950 1.23979 1.54278 1.09248 0.86058 0.82354 0.77718 0.79799 1.20464 1.21753 1.21872 1.21907 0.87569 0.94997 0.95224 0.90912 0.93082 0.91628 0.77548 0.82358 0.80212 0.91906 0.90661 0.93814 0.93702 0.93940 0.95492 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.60 37.16 0.32 -1.84 16 2 C 0.16 2.64 0.83 -129.51 -0.11 2.53 16 3 N -0.70 -10.71 5.17 -46.77 -0.24 -10.95 16 4 C 0.59 9.73 7.18 -12.86 -0.09 9.64 16 5 O -0.52 -10.13 13.68 5.19 0.07 -10.06 16 6 C -0.01 -0.19 7.05 -81.98 -0.58 -0.77 16 7 C -0.14 -1.93 10.66 -39.07 -0.42 -2.35 16 8 C 0.00 0.01 7.98 -39.91 -0.32 -0.31 16 9 F -0.13 -1.72 17.32 2.25 0.04 -1.68 16 10 C 0.00 -0.05 11.90 -16.77 -0.20 -0.25 16 11 N -0.53 -5.50 6.00 -9.31 -0.06 -5.55 16 12 H 0.43 3.26 8.19 -40.82 -0.33 2.93 16 13 C -0.15 -2.44 6.00 -24.74 -0.15 -2.59 16 14 C 0.18 4.03 5.37 -3.06 -0.02 4.01 16 15 N -0.60 -15.13 3.39 -170.08 -0.58 -15.71 16 16 C -0.22 -6.16 10.28 -15.06 -0.15 -6.31 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.93 -26.62 10.31 55.49 0.57 -26.04 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.13 2.78 6.10 -2.53 -0.02 2.77 16 25 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 28 H 0.39 5.01 7.62 -40.82 -0.31 4.70 16 29 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 33 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 34 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 35 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 37 H 0.06 1.34 6.31 -51.93 -0.33 1.01 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -32.90 310.35 -6.94 -39.84 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.57 Total: 4.08 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.82 Total: 4.15 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.30 Total: -58.26 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.90 -6.94 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046499385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.152 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds