Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21697 * 120.00172 * 359.97438 * 4 3 2 6 6 C 1.46662 * 119.99992 * 180.02562 * 4 3 2 7 7 C 1.37925 * 126.21623 * 179.97438 * 6 4 3 8 8 C 1.39922 * 107.10930 * 179.97438 * 7 6 4 9 9 F 1.35107 * 126.07760 * 180.02562 * 8 7 6 10 10 C 1.35567 * 107.84619 * 0.02562 * 8 7 6 11 11 N 1.35751 * 108.82763 * 359.72786 * 10 8 7 12 12 H 0.97008 * 125.67244 * 180.30110 * 11 10 8 13 13 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 14 14 C 1.54321 * 102.96961 * 206.45980 * 13 2 1 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 2 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46764 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46723 * 120.00066 * 20 18 16 23 23 H 1.48499 * 109.47140 * 239.99844 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 26 26 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 27 27 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 28 28 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 29 29 H 1.08000 * 126.44110 * 359.96256 * 7 6 4 30 30 H 1.07995 * 125.58411 * 180.02562 * 10 8 7 31 31 H 1.08998 * 110.70855 * 88.08785 * 13 2 1 32 32 H 1.08998 * 110.85957 * 324.90400 * 13 2 1 33 33 H 1.08998 * 109.88101 * 262.77542 * 14 13 2 34 34 H 1.08997 * 110.01327 * 141.67909 * 14 13 2 35 35 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 36 36 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 37 37 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1163 1.7964 1.9691 6 6 2.3123 3.5609 1.0346 7 6 2.1219 4.5059 2.0210 8 6 2.7919 5.6653 1.6150 9 9 2.8547 6.8288 2.2990 10 6 3.3669 5.4137 0.4134 11 7 3.0869 4.1352 0.0529 12 1 3.3822 3.6997 -0.7621 13 6 2.0901 -0.8107 -1.2023 14 6 3.4707 -1.2757 -0.6934 15 7 3.4280 -1.2429 0.7759 16 6 4.4639 -1.5649 1.6117 17 1 4.3314 -1.5089 2.6821 18 6 5.6841 -1.9633 1.0833 19 7 5.8454 -2.0320 -0.2211 20 14 7.0973 -2.4018 2.2235 21 1 6.6619 -2.2444 3.6345 22 1 7.5061 -3.8096 1.9861 23 1 8.2469 -1.5007 1.9562 24 6 2.0853 -0.8066 1.2002 25 1 -0.3633 0.4753 0.9111 26 1 -0.3634 0.5514 -0.8672 27 1 -0.3633 -1.0268 -0.0440 28 1 2.5890 1.6829 -0.7448 29 1 1.5611 4.3756 2.9347 30 1 3.9556 6.1139 -0.1605 31 1 2.1972 -0.1737 -2.0803 32 1 1.4525 -1.6665 -1.4240 33 1 4.2461 -0.6014 -1.0569 34 1 3.6720 -2.2907 -1.0358 35 1 6.6982 -2.3100 -0.5905 36 1 1.4520 -1.6704 1.4024 37 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046499385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = -28.891124 kcal Electronic energy + Delta-G solvation = -22341.126491 eV Core-core repulsion = 18840.631731 eV Total energy + Delta-G solvation = -3500.494760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.53345 -42.35604 -40.83055 -38.71697 -35.74801 -33.80627 -32.03834 -31.75482 -30.49638 -29.80401 -27.52675 -25.56820 -24.39016 -22.26948 -21.97184 -21.37115 -20.57556 -20.06359 -18.83647 -17.16206 -17.14462 -16.79716 -16.68587 -16.44954 -16.07133 -15.83366 -15.58472 -15.21616 -14.84982 -14.55969 -14.38357 -14.10529 -13.88880 -13.56242 -13.39497 -13.10806 -12.86952 -12.76556 -12.71494 -12.17008 -12.04603 -11.99356 -11.72774 -11.59266 -10.91675 -10.72889 -10.14301 -9.98299 -9.30608 -8.87163 -7.88112 -5.20954 0.29706 1.39827 1.41995 1.43046 1.53152 1.92566 2.06058 2.30077 2.46433 3.30343 3.42988 3.56750 3.70006 3.90879 4.03558 4.05908 4.17588 4.25551 4.53557 4.63888 4.69415 4.76986 4.87077 4.88171 4.93380 5.03985 5.07133 5.32417 5.40849 5.43206 5.59431 5.67119 5.73889 5.76167 6.18972 6.28899 6.55209 7.10812 7.16019 7.76242 8.39820 9.21786 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.005459 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.969522 B = 5127.683577 C = 6159.275663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.693 5.693 4 C 0.588 3.412 5 O -0.560 6.560 6 C -0.038 4.038 7 C -0.149 4.149 8 C -0.030 4.030 9 F -0.135 7.135 10 C 0.036 3.964 11 N -0.509 5.509 12 H 0.441 0.559 13 C -0.126 4.126 14 C 0.183 3.817 15 N -0.620 5.620 16 C -0.239 4.239 17 H 0.066 0.934 18 C -0.057 4.057 19 N -0.944 5.944 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.125 3.875 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.405 0.595 29 H 0.148 0.852 30 H 0.227 0.773 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.009 0.991 35 H 0.248 0.752 36 H 0.026 0.974 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 13.299 -6.429 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.343 5.343 4 C 0.376 3.624 5 O -0.439 6.439 6 C -0.153 4.153 7 C -0.177 4.177 8 C -0.055 4.055 9 F -0.114 7.114 10 C -0.103 4.103 11 N -0.107 5.107 12 H 0.283 0.717 13 C -0.165 4.165 14 C 0.058 3.942 15 N -0.347 5.347 16 C -0.369 4.369 17 H 0.084 0.916 18 C -0.250 4.250 19 N -0.594 5.594 20 Si 0.799 3.201 21 H -0.200 1.200 22 H -0.216 1.216 23 H -0.216 1.216 24 C -0.001 4.001 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.241 0.759 29 H 0.166 0.834 30 H 0.244 0.756 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.038 0.962 34 H 0.027 0.973 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.964 12.822 -5.905 16.208 hybrid contribution 1.460 -0.373 0.440 1.570 sum -6.504 12.449 -5.465 15.071 Atomic orbital electron populations 1.21923 0.91659 1.03346 1.02922 1.21446 0.94212 0.80306 0.95976 1.45582 1.54130 1.12402 1.22228 1.17125 0.79620 0.83383 0.82244 1.90789 1.40974 1.76089 1.36042 1.20058 1.06651 0.94427 0.94145 1.21384 1.04005 0.91937 1.00370 1.16637 1.09805 0.83742 0.95282 1.91419 1.95879 1.45030 1.79116 1.22372 1.03844 0.87286 0.96758 1.41759 1.38952 1.10923 1.19047 0.71653 1.23154 0.96733 1.00067 0.96502 1.20977 0.93012 0.97579 0.82594 1.44685 1.08448 1.78836 1.02697 1.19337 0.90677 1.37583 0.89255 0.91582 1.25456 0.99778 1.02318 0.97470 1.70130 1.24165 1.54711 1.10358 0.85136 0.79424 0.77247 0.78310 1.20017 1.21563 1.21578 1.22020 0.86329 0.95198 0.96566 0.92632 0.90235 0.90397 0.75916 0.83441 0.75619 0.88081 0.88848 0.96215 0.97306 0.94288 0.95620 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.60 71.98 0.62 -3.12 16 2 C 0.17 5.40 0.83 5.10 0.00 5.40 16 3 N -0.69 -20.26 5.17 -420.10 -2.17 -22.43 16 4 C 0.59 19.26 7.18 86.44 0.62 19.88 16 5 O -0.56 -22.34 13.68 -4.34 -0.06 -22.40 16 6 C -0.04 -1.04 7.05 40.36 0.28 -0.76 16 7 C -0.15 -4.22 10.66 22.60 0.24 -3.98 16 8 C -0.03 -0.71 7.98 22.06 0.18 -0.54 16 9 F -0.14 -3.44 17.32 44.97 0.78 -2.66 16 10 C 0.04 0.59 11.90 83.47 0.99 1.59 16 11 N -0.51 -9.23 6.00 -183.38 -1.10 -10.33 16 12 H 0.44 5.22 8.19 -92.70 -0.76 4.46 16 13 C -0.13 -3.91 6.00 31.88 0.19 -3.72 16 14 C 0.18 8.35 5.37 86.73 0.47 8.82 16 15 N -0.62 -31.72 3.39 -692.01 -2.35 -34.07 16 16 C -0.24 -13.74 10.28 84.03 0.86 -12.88 16 17 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 18 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 19 N -0.94 -55.02 10.31 21.65 0.22 -54.80 16 20 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.13 5.44 6.10 86.85 0.53 5.96 16 25 H 0.05 1.71 6.53 -2.39 -0.02 1.70 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 28 H 0.41 9.39 7.62 -92.71 -0.71 8.68 16 29 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.23 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.10 2.41 8.05 -2.39 -0.02 2.39 16 32 H 0.09 2.62 8.03 -2.39 -0.02 2.60 16 33 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 34 H 0.01 0.46 7.50 -2.39 -0.02 0.44 16 35 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 36 H 0.03 1.12 8.04 -2.39 -0.02 1.10 16 37 H 0.03 1.53 6.31 -2.39 -0.02 1.51 16 Total: -1.00 -74.54 310.35 2.46 -72.09 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -0.35 Total: 12.40 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.45 Total: 13.89 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.40 Total: -121.63 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -74.54 2.46 -72.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046499385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.194 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds